Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010902

Physical Location & Seq

Genomic Coordinates Reverse (-)

6504677 .. 6506542

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGACGCTGCTCGAAGCTATCTCCAACGCCGTAGCGAATCAGGACAAGGTCGACTCGCAATCCGATTATCCAATCCCTCTTAGCCACGATGGTATCTTTGCGAATCTGAAACCAAAGCTAGAAAACCCTAATCTTGGTACCCTTGTCAATCCAATTTCCGGGTGGGGAATCTCTGAAAGTGATGTTGAAGTCATCGATTTGGGTAAAAAGTTTTCATCTAAGCTGAAAAGGAAGCTTAAGGATACTAACGGGTTTGTCAAAGATGAGTTTGTCAAGATGTTAAAGCAGTTTCTTGAGAAAATTGGTGAGAAAGTTGGGATTTCAGAGGCTGAGTCTGAGATGGTTTTGGGAGATCAAGCTGGTTCTGAGATACAGATACTGGTGGAGAAAAATGGGTTTTTGATGGGTAGAGATGTATCTGGTTTAGTGTTGAAAGGTTGTATTAGTCTAGAGATGTGGGAGCTAGTGGAAATTTTGATTTCAAACTCCTTGGTTGATCATTCTTCATACTCTTATTTAGTTAGCAATCTTGTTGAGAAGCAAAGGTCAGATTTGCTTTGCGTAGTGATCAAAGAAGCTTCAGATCTTGGGGCAACTGAGCTACTTTCAATCTTGAAGTATTTTTTATGCCCATCAAAGGAAGCAATTAGCACTATGGCTAAGGTAAGAGAAGAATGGGAGAGTCAGGCTATGTTGGCTATTGAAAAGGTGAGCAACACAGAGCTATCAAAGAAGTCTAAAGTTGCAGAAGAGGCTTCTATCTTGTTAATGGTTGCTCATGACGGGTTTTCAACCTCAGAGCTTTGCCTGCATTACTTGTTAGCTTCACGGAATGTTGACGAAGTCATGTTTGCATCTGCAGTCAGTAAGTTGAATGGCAATGAGATGGGTAGCTTTATTCGATACCTCTCTAAATGGATGAAGAAGTATGAGATGTTCCCACAAGCTGGTCCATGCCCTAAAGCCGCCTCCAAGCTTGGTTTGAAACTATGCAACTGGGTTCCTGAACTCACAGACATTACCAAATGTTTGGGACTTCTTATCGATGAGAACTTCTCCACTCTGGTTCTGTACTCGGATTTGCATGAAGAGCTAAAGTCTATTGCAAGAGTAGCCGATGGGTTAGCTTCAGAATCAAAACTTTCCTGTTTTGTGGCTAATGTGGTTGAAAGTTTGAAGCTTGGAGCTGCCCGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

43.95

Weight (kDa)

5.2

Isoelectric Point (pI)

24.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18850
fragaria_vesca	FvH4_5g15370 FvH4_5g15370
malus_domestica	MD14G1195800.v1.1
prunus_persica	Prupe.5G187600_v2.0.a1 Prupe.5G187600_v2.0.a1
pyrus_communis	pycom14g16260
rosa_chinensis	RchiOBHm_Chr7g0180701
rosa_laevigata	RLG00000005239
rosa_multiflora	Rmu_sc0007457.1_g000025 Rmu_sc0023372.1_g000014 Rmu_sc0041667.1_g000001 Rmu_sc0041668.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272640
rosa_rugosa	Rorug06G0435000
rosa_samantha	Rh7AG036700 Rh7BG036500 Rh7CG038200 Rh7DG036700
rosa_wichuraiana	Rw7G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	137
AccB7I	CCANNNNNTGG	1 cut(s)	947
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	1 cut(s)	966
AcsI	RAATTY	1 cut(s)	471
AcuI	CTGAAG	2 cut(s)	564, 1113
AfaI	GTAC	2 cut(s)	139, 1073
AfiI	CCNNNNNNNGG	4 cut(s)	134, 158, 637, 947
AflII	CTTAAG	1 cut(s)	236
AlwNI	CAGNNNCTG	2 cut(s)	329, 379
ApeKI	GCWGC	2 cut(s)	7, 1187
ApoI	RAATTY	1 cut(s)	471
Asp718I	GGTACC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	950
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	317, 721
AvaII	GGWCC	1 cut(s)	950
BaeI	ACNNNNGTAYC	4 cut(s)	76, 109, 129, 162
BanI	GGYRCC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	1174
BccI	CCATC	6 cut(s)	83, 334, 397, 640, 880, 1112
BceAI	ACGGC	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	235
BclI	TGATCA	2 cut(s)	496, 567
BcnI	CCSGG	1 cut(s)	160
BfaI	CTAG	4 cut(s)	119, 449, 464, 1198
BfmI	CTRYAG	1 cut(s)	858
BfrI	CTTAAG	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	235
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	3 cut(s)	8, 966, 1188
BlsI	GCNGC	3 cut(s)	9, 967, 1189
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	950
BmgT120I	GGNCC	1 cut(s)	950
BmiI	GGNNCC	2 cut(s)	139, 1002
BmrFI	CCNGG	1 cut(s)	160
BmrI	ACTGGG	1 cut(s)	1006
BmsI	GCATC	1 cut(s)	863
BmuI	ACTGGG	1 cut(s)	1006
BplI	GAGNNNNNCTC	2 cut(s)	1040, 1072
Bpu10I	CCTNAGC	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	160
Bsa29I	ATCGAT	2 cut(s)	195, 1044
BsaJI	CCNNGG	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 158, 637, 947
Bse1I	ACTGG	2 cut(s)	384, 1001
Bse3DI	GCAATG	1 cut(s)	886
BseCI	ATCGAT	2 cut(s)	195, 1044
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	924
BseLI	CCNNNNNNNGG	4 cut(s)	134, 158, 637, 947
BseMI	GCAATG	1 cut(s)	886
BseMII	CTCAG	5 cut(s)	321, 327, 357, 588, 810
BseNI	ACTGG	2 cut(s)	384, 1001
BseXI	GCAGC	1 cut(s)	1174
BshNI	GGYRCC	1 cut(s)	137
BshVI	ATCGAT	2 cut(s)	195, 1044
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	1047
BslI	CCNNNNNNNGG	4 cut(s)	134, 158, 637, 947
BsmFI	GGGAC	1 cut(s)	1047
Bsp143I	GATC	4 cut(s)	352, 496, 567, 583
BspACI	CCGC	1 cut(s)	966
BspCNI	CTCAG	5 cut(s)	322, 328, 358, 589, 809
BspDI	ATCGAT	2 cut(s)	195, 1044
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	2 cut(s)	139, 1002
BspMAI	CTGCAG	1 cut(s)	862
BspQI	GCTCTTC	1 cut(s)	1083
BspT107I	GGYRCC	1 cut(s)	137
BspTI	CTTAAG	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	886
BsrI	ACTGG	2 cut(s)	384, 1001
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	4 cut(s)	352, 496, 567, 583
BssT1I	CCWWGG	1 cut(s)	489
Bst6I	CTCTTC	2 cut(s)	744, 1083
BstAFI	CTTAAG	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	809
BstDEI	CTNAG	8 cut(s)	80, 219, 330, 336, 366, 597, 660, 796
BstF5I	GGATG	1 cut(s)	924
BstKTI	GATC	4 cut(s)	355, 499, 570, 586
BstMBI	GATC	4 cut(s)	352, 496, 567, 583
BstMWI	GCNNNNNNNGC	5 cut(s)	695, 752, 808, 1090, 1112
BstSCI	CCNGG	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	858
BstV1I	GCAGC	1 cut(s)	1174
BstX2I	RGATCY	1 cut(s)	583
BstXI	CCANNNNNNTGG	1 cut(s)	1030
BstYI	RGATCY	1 cut(s)	583
Bsu15I	ATCGAT	2 cut(s)	195, 1044
BsuI	GTATCC	1 cut(s)	235
BsuTUI	ATCGAT	2 cut(s)	195, 1044
BtsCI	GGATG	1 cut(s)	924
Cac8I	GCNNGC	1 cut(s)	809
CaiI	CAGNNNCTG	2 cut(s)	329, 379
CciI	TCATGA	1 cut(s)	778
Cfr13I	GGNCC	1 cut(s)	950
ClaI	ATCGAT	2 cut(s)	195, 1044
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	138, 1072
CviAII	CATG	4 cut(s)	779, 847, 954, 1085
CviQI	GTAC	2 cut(s)	138, 1072
DdeI	CTNAG	8 cut(s)	80, 219, 330, 336, 366, 597, 660, 796
DpnI	GATC	4 cut(s)	354, 498, 569, 585
DpnII	GATC	4 cut(s)	352, 496, 567, 583
Eam1104I	CTCTTC	2 cut(s)	744, 1083
EarI	CTCTTC	2 cut(s)	744, 1083
Eco130I	CCWWGG	1 cut(s)	489
Eco47I	GGWCC	1 cut(s)	950
Eco57I	CTGAAG	2 cut(s)	564, 1113
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	4 cut(s)	782, 850, 957, 1088
FaqI	GGGAC	1 cut(s)	1047
FatI	CATG	4 cut(s)	778, 846, 953, 1084
FbaI	TGATCA	2 cut(s)	496, 567
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	8, 966, 1188
FokI	GGATG	1 cut(s)	931
Fsp4HI	GCNGC	3 cut(s)	8, 966, 1188
FspBI	CTAG	4 cut(s)	119, 449, 464, 1198
GluI	GCNGC	3 cut(s)	8, 966, 1188
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	4 cut(s)	782, 850, 957, 1088
HincII	GTYRAC	2 cut(s)	52, 838
HindII	GTYRAC	2 cut(s)	52, 838
HindIII	AAGCTT	4 cut(s)	233, 576, 974, 1178
HinfI	GANTC	7 cut(s)	37, 53, 103, 168, 332, 682, 1133
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	317, 721
Hpy166II	GTNNAC	2 cut(s)	52, 838
Hpy188III	TCNNGA	7 cut(s)	41, 274, 293, 449, 613, 779, 1004
Hpy8I	GTNNAC	2 cut(s)	52, 838
HpyCH4V	TGCA	7 cut(s)	746, 811, 854, 860, 993, 1084, 1106
HpyF10VI	GCNNNNNNNGC	5 cut(s)	695, 752, 808, 1090, 1112
HpyF3I	CTNAG	8 cut(s)	80, 219, 330, 336, 366, 597, 660, 796
Hsp92II	CATG	4 cut(s)	782, 850, 957, 1088
KpnI	GGTACC	1 cut(s)	141
Ksp22I	TGATCA	2 cut(s)	496, 567
Kzo9I	GATC	4 cut(s)	352, 496, 567, 583
LguI	GCTCTTC	1 cut(s)	1083
LmnI	GCTCC	2 cut(s)	460, 1184
Lsp1109I	GCAGC	1 cut(s)	1174
LweI	GCATC	1 cut(s)	863
MaeI	CTAG	4 cut(s)	119, 449, 464, 1198
MalI	GATC	4 cut(s)	354, 498, 569, 585
MboI	GATC	4 cut(s)	352, 496, 567, 583
MboII	GAAGA	5 cut(s)	495, 683, 761, 934, 1100
MflI	RGATCY	1 cut(s)	583
MluCI	AATT	4 cut(s)	153, 300, 471, 645
MlyI	GAGTC	3 cut(s)	47, 341, 691
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	6 cut(s)	87, 319, 745, 805, 917, 979
MseI	TTAA	3 cut(s)	237, 281, 767
MspCI	CTTAAG	1 cut(s)	236
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	5 cut(s)	695, 752, 808, 1090, 1112
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	4 cut(s)	352, 496, 567, 583
NlaIII	CATG	4 cut(s)	782, 850, 957, 1088
NlaIV	GGNNCC	2 cut(s)	139, 1002
PagI	TCATGA	1 cut(s)	778
PciSI	GCTCTTC	1 cut(s)	1083
PfeI	GAWTC	4 cut(s)	37, 103, 168, 1133
PflFI	GACNNNGTC	2 cut(s)	47, 842
PflMI	CCANNNNNTGG	1 cut(s)	947
PkrI	GCNGC	3 cut(s)	9, 967, 1189
PleI	GAGTC	3 cut(s)	47, 340, 690
PpsI	GAGTC	3 cut(s)	47, 340, 690
PspN4I	GGNNCC	2 cut(s)	139, 1002
PspPI	GGNCC	1 cut(s)	950
PsrI	GAACNNNNNNTAC	2 cut(s)	920, 952
PstI	CTGCAG	1 cut(s)	862
PstNI	CAGNNNCTG	2 cut(s)	329, 379
PsuI	RGATCY	1 cut(s)	583
PsyI	GACNNNGTC	2 cut(s)	47, 842
RsaI	GTAC	2 cut(s)	139, 1073
RsaNI	GTAC	2 cut(s)	138, 1072
SalI	GTCGAC	1 cut(s)	50
SapI	GCTCTTC	1 cut(s)	1083
SaqAI	TTAA	3 cut(s)	237, 281, 767
SatI	GCNGC	3 cut(s)	8, 966, 1188
Sau3AI	GATC	4 cut(s)	352, 496, 567, 583
Sau96I	GGNCC	1 cut(s)	950
SchI	GAGTC	3 cut(s)	47, 341, 691
ScrFI	CCNGG	1 cut(s)	160
SfaNI	GCATC	1 cut(s)	863
SfcI	CTRYAG	1 cut(s)	858
SinI	GGWCC	1 cut(s)	950
SmlI	CTYRAG	2 cut(s)	236, 293
SmoI	CTYRAG	2 cut(s)	236, 293
Sse9I	AATT	4 cut(s)	153, 300, 471, 645
SsiI	CCGC	1 cut(s)	966
SspMI	CTAG	4 cut(s)	119, 449, 464, 1198
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	489
TaqI	TCGA	5 cut(s)	12, 51, 195, 901, 1044
TasI	AATT	4 cut(s)	153, 300, 471, 645
TatI	WGTACW	1 cut(s)	1071
TauI	GCSGC	1 cut(s)	968
TfiI	GAWTC	4 cut(s)	37, 103, 168, 1133
Tru1I	TTAA	3 cut(s)	237, 281, 767
Tru9I	TTAA	3 cut(s)	237, 281, 767
TseI	GCWGC	2 cut(s)	7, 1187
TspDTI	ATGAA	4 cut(s)	204, 495, 935, 1101
TspGWI	ACGGA	1 cut(s)	844
Tth111I	GACNNNGTC	2 cut(s)	47, 842
Van91I	CCANNNNNTGG	1 cut(s)	947
Vha464I	CTTAAG	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	950
XapI	RAATTY	1 cut(s)	471
XbaI	TCTAGA	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	4 cut(s)	119, 449, 464, 1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.