Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010902

Physical Location & Seq

Genomic Coordinates Forward (+)

8713500 .. 8715060

Gene Structure 1561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15370.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTCATTGCTGGAAGTAATCACCAAGGCTTCAGCCGAGTCCCAATCGCTCTATTCCCCATCAGAATACCCAATTGTTCTCGACCCAGATTCTATCTTCCCCAATTTGAAGCCCAAACTCGACGATCCAAATCCCATCTCAGCCGCAATTCCTCTTAATGGTTGGGAAATTTCACAGACCGATTCAGAGCTCATTGAGTTGGGTAAGAAGTTCACTACCAAGCTCAAGAAGAAGCTCAAGAACCCAGTTAAGTTTGACAGAGCTGAGTTCTTGGGAATGGTGAACGCATTTCTTGAGAAGATTAGGGACAAGGTCGGTGTTTCGATTGGGGTTGTTGATTCTAGTAATGAGGGGTATACATTGGTTTTGGTTGAGAAGGTTAGGGAGTATATGGGGAAGGATGTTGCTGGTTTGGTTTTGGAGGCTTGTGTTGTGTTGGAGGTTTGGGAGTTAGTGGGGACTTTGATTGCAAATGGGCTTGTTTCGAGTTCTTGTTATAAGGATTTGGTTGCAAAGATTGTGGCAAAGAGGAGGACAGAGTTGGTTTGTATGTGTTTGAGGTATGCGTCTGATCTTGGATCGTCGGAGTTGGTGATGATCTTGAAGTATTTTCTTAGTCCAACTAAGGATGCTTATGATAGCATTGTGGAGGTGAGGAAGGAATGGGAGAGCCAAGCCTTGTTGGCCGCGGAGAAGGCTAGTGATAGGAGTCTGTCCGGGAAGAAACTTTGCATGGCAAAAGAGGCTGCGGTGTTGCTTATGGTGGCGTATGATGGGTTCTCTTCCGCGGAACTCTGTTTGCATTATTTGTTGGTGTCAAAGAATGTTGATGAGGTGATATTGTCGTCTGCGGTTAGTAAGTTGAGTGGGAAAGAGATGGTGAGTTTGCTTCGGTATTTGGGGAAGTGGCTGAAGAAGTACGAGAGGTTTCCTCAGGCAGGTCCATGCCACAAGGCATCAACTACATTGGGTTTGAAGGCTTGTGATTGGGTTCCGAAACTTGAAGATGTTCTGAAATGCACTGGGGTGGTGCTGGATGAGAATTACTCTGCGTTGGTGTTGCATCCGGAGTTTCACGAAGAGCTGAGGTCTATAAACAAAGTTGTCGGTTCCTTGACCTTGGAAGCAAGGCTCTGCTACTCTGTGGCCAATGTGGCTGATAAGTTGAAAGCTGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

394

Amino Acids

43.4

Weight (kDa)

6.21

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18850
fragaria_vesca	FvH4_5g15370 FvH4_5g15370
malus_domestica	MD14G1195800.v1.1
prunus_persica	Prupe.5G187600_v2.0.a1 Prupe.5G187600_v2.0.a1
pyrus_communis	pycom14g16260
rosa_chinensis	RchiOBHm_Chr7g0180701
rosa_laevigata	RLG00000005239
rosa_multiflora	Rmu_sc0007457.1_g000025 Rmu_sc0023372.1_g000014 Rmu_sc0041667.1_g000001 Rmu_sc0041668.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272640
rosa_rugosa	Rorug06G0435000
rosa_samantha	Rh7AG036700 Rh7BG036500 Rh7CG038200 Rh7DG036700
rosa_wichuraiana	Rw7G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
Acc36I	ACCTGC	1 cut(s)	929
AccI	GTMKAC	1 cut(s)	356
AccII	CGCG	2 cut(s)	689, 788
AccIII	TCCGGA	1 cut(s)	1066
AciI	CCGC	7 cut(s)	144, 687, 689, 749, 786, 788, 851
AclWI	GGATC	2 cut(s)	119, 586
AcoI	YGGCCR	2 cut(s)	684, 1146
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	2 cut(s)	15, 932
AfaI	GTAC	1 cut(s)	920
AfiI	CCNNNNNNNGG	2 cut(s)	158, 938
AgsI	TTSAA	5 cut(s)	109, 604, 976, 1004, 1168
AleI	CACNNNNGTG	1 cut(s)	1025
AluBI	AGCT	6 cut(s)	190, 223, 235, 263, 1084, 1172
AluI	AGCT	6 cut(s)	190, 223, 235, 263, 1084, 1172
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	119, 586
Aor13HI	TCCGGA	1 cut(s)	1066
AoxI	GGCC	2 cut(s)	684, 1146
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	1008
AspS9I	GGNCC	1 cut(s)	941
AsuC2I	CCSGG	1 cut(s)	718
AsuHPI	GGTGA	6 cut(s)	13, 292, 604, 664, 847, 892
AvaII	GGWCC	1 cut(s)	941
AxyI	CCTNAGG	1 cut(s)	933
BalI	TGGCCA	1 cut(s)	1148
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	1085
BbvI	GCAGC	1 cut(s)	733
BccI	CCATC	4 cut(s)	67, 143, 767, 871
BcnI	CCSGG	1 cut(s)	718
BfaI	CTAG	2 cut(s)	342, 699
BfuAI	ACCTGC	1 cut(s)	929
BglI	GCCNNNNNGGC	2 cut(s)	683, 1154
BisI	GCNGC	3 cut(s)	144, 687, 747
BlsI	GCNGC	3 cut(s)	145, 688, 748
Bme1390I	CCNGG	1 cut(s)	718
Bme18I	GGWCC	1 cut(s)	941
BmgT120I	GGNCC	1 cut(s)	941
BmiI	GGNNCC	2 cut(s)	993, 1111
BmrFI	CCNGG	1 cut(s)	718
BmrI	ACTGGG	2 cut(s)	239, 1032
BmsI	GCATC	3 cut(s)	619, 965, 1072
BmuI	ACTGGG	2 cut(s)	239, 1032
BplI	GAGNNNNNCTC	4 cut(s)	916, 948, 1031, 1063
Bpu10I	CCTNAGC	1 cut(s)	1085
BpuEI	CTTGAG	3 cut(s)	209, 221, 314
BpuMI	CCSGG	1 cut(s)	718
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	4 cut(s)	24, 687, 786, 1119
BsaWI	WCCGGW	1 cut(s)	1066
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 938
Bse1I	ACTGG	2 cut(s)	245, 1027
Bse21I	CCTNAGG	1 cut(s)	933
Bse3DI	GCAATG	1 cut(s)	5
Bse8I	GATNNNNATC	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	1066
BseDI	CCNNGG	4 cut(s)	24, 687, 786, 1119
BseGI	GGATG	4 cut(s)	406, 634, 1042, 1063
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	158, 938
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	4 cut(s)	153, 255, 947, 1076
BseNI	ACTGG	2 cut(s)	245, 1027
BseRI	GAGGAG	1 cut(s)	544
BseXI	GCAGC	1 cut(s)	733
Bsh1236I	CGCG	2 cut(s)	689, 788
BshFI	GGCC	2 cut(s)	686, 1148
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	717, 1067
BslFI	GGGAC	3 cut(s)	25, 320, 472
BslI	CCNNNNNNNGG	2 cut(s)	158, 938
BsmFI	GGGAC	3 cut(s)	25, 320, 472
BsnI	GGCC	2 cut(s)	686, 1148
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp13I	TCCGGA	1 cut(s)	1066
Bsp143I	GATC	4 cut(s)	124, 571, 578, 597
BspACI	CCGC	7 cut(s)	144, 687, 689, 749, 786, 788, 851
BspANI	GGCC	2 cut(s)	686, 1148
BspCNI	CTCAG	4 cut(s)	152, 256, 946, 1077
BspEI	TCCGGA	1 cut(s)	1066
BspFNI	CGCG	2 cut(s)	689, 788
BspLI	GGNNCC	2 cut(s)	993, 1111
BspMI	ACCTGC	1 cut(s)	929
BspPI	GGATC	2 cut(s)	119, 586
BspQI	GCTCTTC	1 cut(s)	1074
BsrDI	GCAATG	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	245, 1027
BssECI	CCNNGG	4 cut(s)	24, 687, 786, 1119
BssMI	GATC	4 cut(s)	124, 571, 578, 597
BssNAI	GTATAC	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	24, 1119
Bst1107I	GTATAC	1 cut(s)	357
Bst6I	CTCTTC	2 cut(s)	787, 1074
BstDEI	CTNAG	6 cut(s)	139, 264, 614, 624, 933, 1085
BstDSI	CCRYGG	2 cut(s)	687, 786
BstENI	CCTNNNNNAGG	1 cut(s)	936
BstF5I	GGATG	4 cut(s)	406, 634, 1042, 1063
BstFNI	CGCG	2 cut(s)	689, 788
BstKTI	GATC	4 cut(s)	127, 574, 581, 600
BstMBI	GATC	4 cut(s)	124, 571, 578, 597
BstMWI	GCNNNNNNNGC	4 cut(s)	683, 695, 743, 1154
BstSCI	CCNGG	1 cut(s)	716
BstUI	CGCG	2 cut(s)	689, 788
BstV1I	GCAGC	1 cut(s)	733
BstZ17I	GTATAC	1 cut(s)	357
Bsu36I	CCTNAGG	1 cut(s)	933
BsuRI	GGCC	2 cut(s)	686, 1148
BtgI	CCRYGG	2 cut(s)	687, 786
BtsCI	GGATG	4 cut(s)	406, 634, 1042, 1063
BtsIMutI	CAGTG	1 cut(s)	1020
BveI	ACCTGC	1 cut(s)	929
Cfr13I	GGNCC	1 cut(s)	941
Cfr42I	CCGCGG	2 cut(s)	690, 789
CseI	GACGC	1 cut(s)	555
Csp6I	GTAC	1 cut(s)	919
CspCI	CAANNNNNGTGG	2 cut(s)	501, 536
CviAII	CATG	2 cut(s)	733, 945
CviQI	GTAC	1 cut(s)	919
DdeI	CTNAG	6 cut(s)	139, 264, 614, 624, 933, 1085
DpnI	GATC	4 cut(s)	126, 573, 580, 599
DpnII	GATC	4 cut(s)	124, 571, 578, 597
EaeI	YGGCCR	2 cut(s)	684, 1146
Eam1104I	CTCTTC	2 cut(s)	787, 1074
EarI	CTCTTC	2 cut(s)	787, 1074
Ecl136II	GAGCTC	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	24, 1119
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	941
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	2 cut(s)	15, 932
Eco81I	CCTNAGG	1 cut(s)	933
EcoICRI	GAGCTC	1 cut(s)	190
EcoNI	CCTNNNNNAGG	1 cut(s)	936
EcoT14I	CCWWGG	2 cut(s)	24, 1119
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	2 cut(s)	24, 1119
FaeI	CATG	2 cut(s)	736, 948
FaqI	GGGAC	3 cut(s)	25, 320, 472
FatI	CATG	2 cut(s)	732, 944
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	3 cut(s)	144, 687, 747
FokI	GGATG	4 cut(s)	413, 641, 1049, 1050
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	3 cut(s)	144, 687, 747
FspBI	CTAG	2 cut(s)	342, 699
GluI	GCNGC	3 cut(s)	144, 687, 747
HaeIII	GGCC	2 cut(s)	686, 1148
HapII	CCGG	2 cut(s)	717, 1067
HgaI	GACGC	1 cut(s)	555
Hin1II	CATG	2 cut(s)	736, 948
HinfI	GANTC	5 cut(s)	38, 89, 182, 338, 709
HpaII	CCGG	2 cut(s)	717, 1067
HphI	GGTGA	6 cut(s)	13, 292, 604, 664, 847, 892
Hpy166II	GTNNAC	3 cut(s)	213, 283, 357
Hpy188I	TCNGA	6 cut(s)	64, 187, 571, 586, 996, 1014
Hpy188III	TCNNGA	7 cut(s)	80, 226, 238, 293, 601, 1067, 1076
Hpy8I	GTNNAC	3 cut(s)	213, 283, 357
Hpy99I	CGWCG	2 cut(s)	125, 586
HpyAV	CCTTC	5 cut(s)	370, 391, 652, 688, 970
HpyCH4V	TGCA	6 cut(s)	470, 512, 732, 802, 1020, 1063
HpyF10VI	GCNNNNNNNGC	4 cut(s)	683, 695, 743, 1154
HpyF3I	CTNAG	6 cut(s)	139, 264, 614, 624, 933, 1085
Hsp92II	CATG	2 cut(s)	736, 948
Kpn2I	TCCGGA	1 cut(s)	1066
KspI	CCGCGG	2 cut(s)	690, 789
Kzo9I	GATC	4 cut(s)	124, 571, 578, 597
LguI	GCTCTTC	1 cut(s)	1074
LpnPI	CCDG	9 cut(s)	99, 258, 393, 730, 920, 924, 1008, 1019, 1080
Lsp1109I	GCAGC	1 cut(s)	733
LweI	GCATC	3 cut(s)	619, 965, 1072
MaeI	CTAG	2 cut(s)	342, 699
MalI	GATC	4 cut(s)	126, 573, 580, 599
MboI	GATC	4 cut(s)	124, 571, 578, 597
MboII	GAAGA	8 cut(s)	88, 241, 310, 733, 774, 925, 1016, 1091
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	1148
MluCI	AATT	5 cut(s)	72, 103, 147, 168, 1042
MluNI	TGGCCA	1 cut(s)	1148
MlyI	GAGTC	2 cut(s)	47, 718
MmeI	TCCRAC	3 cut(s)	417, 564, 644
Mox20I	TGGCCA	1 cut(s)	1148
MroI	TCCGGA	1 cut(s)	1066
MroXI	GAANNNNTTC	1 cut(s)	1008
MscI	TGGCCA	1 cut(s)	1148
MseI	TTAA	3 cut(s)	156, 249, 1180
MslI	CAYNNNNRTG	1 cut(s)	1025
Msp20I	TGGCCA	1 cut(s)	1148
MspA1I	CMGCKG	2 cut(s)	689, 788
MspI	CCGG	2 cut(s)	717, 1067
MspR9I	CCNGG	1 cut(s)	718
MunI	CAATTG	1 cut(s)	72
MvnI	CGCG	2 cut(s)	689, 788
MwoI	GCNNNNNNNGC	4 cut(s)	683, 695, 743, 1154
NciI	CCSGG	1 cut(s)	718
NdeII	GATC	4 cut(s)	124, 571, 578, 597
NlaIII	CATG	2 cut(s)	736, 948
NlaIV	GGNNCC	2 cut(s)	993, 1111
NmeAIII	GCCGAG	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	1025
PciSI	GCTCTTC	1 cut(s)	1074
PdmI	GAANNNNTTC	1 cut(s)	1008
PfeI	GAWTC	3 cut(s)	89, 182, 338
PflFI	GACNNNGTC	1 cut(s)	311
PfoI	TCCNGGA	1 cut(s)	716
PkrI	GCNGC	3 cut(s)	145, 688, 748
PleI	GAGTC	2 cut(s)	46, 717
PpsI	GAGTC	2 cut(s)	46, 717
PsiI	TTATAA	1 cut(s)	498
Psp124BI	GAGCTC	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	993, 1111
PspPI	GGNCC	1 cut(s)	941
PsrI	GAACNNNNNNTAC	2 cut(s)	761, 793
PsyI	GACNNNGTC	1 cut(s)	311
RsaI	GTAC	1 cut(s)	920
RsaNI	GTAC	1 cut(s)	919
RseI	CAYNNNNRTG	1 cut(s)	1025
SacI	GAGCTC	1 cut(s)	192
SacII	CCGCGG	2 cut(s)	690, 789
SapI	GCTCTTC	1 cut(s)	1074
SaqAI	TTAA	3 cut(s)	156, 249, 1180
SatI	GCNGC	3 cut(s)	144, 687, 747
Sau3AI	GATC	4 cut(s)	124, 571, 578, 597
Sau96I	GGNCC	1 cut(s)	941
SchI	GAGTC	2 cut(s)	47, 718
ScrFI	CCNGG	1 cut(s)	718
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	3 cut(s)	619, 965, 1072
Sfr303I	CCGCGG	2 cut(s)	690, 789
SgrBI	CCGCGG	2 cut(s)	690, 789
SinI	GGWCC	1 cut(s)	941
SmiMI	CAYNNNNRTG	1 cut(s)	1025
SmlI	CTYRAG	3 cut(s)	224, 236, 293
SmoI	CTYRAG	3 cut(s)	224, 236, 293
Sse9I	AATT	5 cut(s)	72, 103, 147, 168, 1042
SsiI	CCGC	7 cut(s)	144, 687, 689, 749, 786, 788, 851
SspMI	CTAG	2 cut(s)	342, 699
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	716
StyI	CCWWGG	2 cut(s)	24, 1119
TaqI	TCGA	4 cut(s)	81, 120, 323, 485
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	5 cut(s)	72, 103, 147, 168, 1042
TauI	GCSGC	2 cut(s)	146, 689
TfiI	GAWTC	3 cut(s)	89, 182, 338
Tru1I	TTAA	3 cut(s)	156, 249, 1180
Tru9I	TTAA	3 cut(s)	156, 249, 1180
TscAI	CASTG	1 cut(s)	1027
TseI	GCWGC	1 cut(s)	746
TspRI	CASTG	1 cut(s)	1027
Tth111I	GACNNNGTC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	941
XagI	CCTNNNNNAGG	1 cut(s)	936
XapI	RAATTY	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	1008
XspI	CTAG	2 cut(s)	342, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.