Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023372.1

Orthogroup ID

OG0010902

Physical Location & Seq

Genomic Coordinates Reverse (-)

36816 .. 37463

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023372.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgggtttctgtgcttgcctagttaggtatgcttctgatcttggatcgtcggagttggtgatgatcttgaagtattttcttagtccaagtaaagatgcttatgctagcattgtggaggtgaggaaggaatgggagagccaagccttgttagccgcggagaaggccagtgataagagtctgtcggggaagaaactaagcatggcaaaagaggctgcggtgttacttatggtggcatatgatgggttctcttccgccgaactctgtctgcattatttattggtgtcaaagaatgttgatgaggtgatactgtcgtctgcgattagtaagttgaatgggaaagagatggtgagtttgcttcggtatttgggtaagtggctgaagaagtacgagaggtttcctcaggcaggcccctgccacaaggcatcaacaacattgggtttgaaggcttgtgattgggttcctaaacttgaagatgttctgaaatgcactggggtggtgctggatgagaattactctgcattggtgttgcatccagagtttcacgaagagttgaggtctataaacaaagtcgttggttccttgaccttggaagcaaggctctgctgctctgtggccaatgtagctgataagttgaaagctgaagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.64

Weight (kDa)

7.53

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18850
fragaria_vesca	FvH4_5g15370 FvH4_5g15370
malus_domestica	MD14G1195800.v1.1
prunus_persica	Prupe.5G187600_v2.0.a1 Prupe.5G187600_v2.0.a1
pyrus_communis	pycom14g16260
rosa_chinensis	RchiOBHm_Chr7g0180701
rosa_laevigata	RLG00000005239
rosa_multiflora	Rmu_sc0007457.1_g000025 Rmu_sc0023372.1_g000014 Rmu_sc0041667.1_g000001 Rmu_sc0041668.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272640
rosa_rugosa	Rorug06G0435000
rosa_samantha	Rh7AG036700 Rh7BG036500 Rh7CG038200 Rh7DG036700
rosa_wichuraiana	Rw7G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	155
AciI	CCGC	4 cut(s)	153, 155, 215, 252
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	612
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	5 cut(s)	70, 331, 442, 470, 634
AleI	CACNNNNGTG	1 cut(s)	491
AluBI	AGCT	2 cut(s)	623, 638
AluI	AGCT	2 cut(s)	623, 638
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	3 cut(s)	162, 406, 612
ApeKI	GCWGC	2 cut(s)	212, 603
Asp700I	GAANNNNTTC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	4 cut(s)	70, 130, 313, 358
AsuNHI	GCTAGC	1 cut(s)	104
AxyI	CCTNAGG	1 cut(s)	399
BaeI	ACNNNNGTAYC	2 cut(s)	296, 329
BalI	TGGCCA	1 cut(s)	614
BbvI	GCAGC	2 cut(s)	199, 590
BccI	CCATC	2 cut(s)	233, 337
BfaI	CTAG	2 cut(s)	20, 105
BisI	GCNGC	3 cut(s)	153, 213, 604
BlsI	GCNGC	3 cut(s)	154, 214, 605
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	3 cut(s)	409, 459, 577
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	3 cut(s)	85, 431, 538
BmtI	GCTAGC	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	498
BplI	GAGNNNNNCTC	4 cut(s)	382, 414, 497, 529
BsaJI	CCNNGG	2 cut(s)	153, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse1I	ACTGG	2 cut(s)	165, 493
Bse21I	CCTNAGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	153, 585
BseGI	GGATG	2 cut(s)	508, 529
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	165, 493
BseXI	GCAGC	2 cut(s)	199, 590
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	164, 408, 614
BslI	CCNNNNNNNGG	1 cut(s)	404
BsnI	GGCC	3 cut(s)	164, 408, 614
Bsp143I	GATC	3 cut(s)	37, 44, 63
BspACI	CCGC	4 cut(s)	153, 155, 215, 252
BspANI	GGCC	3 cut(s)	164, 408, 614
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	3 cut(s)	409, 459, 577
BspOI	GCTAGC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	52
BsrI	ACTGG	2 cut(s)	165, 493
BssECI	CCNNGG	2 cut(s)	153, 585
BssMI	GATC	3 cut(s)	37, 44, 63
BssT1I	CCWWGG	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	2 cut(s)	253, 540
BstC8I	GCNNGC	3 cut(s)	16, 106, 406
BstDEI	CTNAG	3 cut(s)	80, 194, 399
BstDSI	CCRYGG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	508, 529
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	3 cut(s)	40, 47, 66
BstMBI	GATC	3 cut(s)	37, 44, 63
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 161, 209, 620
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	199, 590
Bsu36I	CCTNAGG	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	164, 408, 614
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	508, 529
BtsIMutI	CAGTG	2 cut(s)	172, 486
Cac8I	GCNNGC	3 cut(s)	16, 106, 406
Cfr13I	GGNCC	1 cut(s)	407
Cfr42I	CCGCGG	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	1 cut(s)	199
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	3 cut(s)	80, 194, 399
DpnI	GATC	3 cut(s)	39, 46, 65
DpnII	GATC	3 cut(s)	37, 44, 63
EaeI	YGGCCR	1 cut(s)	612
Eam1104I	CTCTTC	2 cut(s)	253, 540
EarI	CTCTTC	2 cut(s)	253, 540
EciI	GGCGGA	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	585
Eco57I	CTGAAG	1 cut(s)	398
Eco81I	CCTNAGG	1 cut(s)	399
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	1 cut(s)	202
FaiI	YATR	7 cut(s)	30, 102, 200, 227, 235, 237, 560
FatI	CATG	1 cut(s)	198
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	3 cut(s)	153, 213, 604
FokI	GGATG	2 cut(s)	515, 516
Fsp4HI	GCNGC	3 cut(s)	153, 213, 604
FspBI	CTAG	2 cut(s)	20, 105
GluI	GCNGC	3 cut(s)	153, 213, 604
HaeIII	GGCC	3 cut(s)	164, 408, 614
Hin1II	CATG	1 cut(s)	202
HinfI	GANTC	1 cut(s)	175
HphI	GGTGA	4 cut(s)	70, 130, 313, 358
Hpy188I	TCNGA	3 cut(s)	37, 52, 480
Hpy188III	TCNNGA	3 cut(s)	67, 533, 542
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	118, 154, 436
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4V	TGCA	4 cut(s)	268, 486, 518, 529
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 161, 209, 620
HpyF3I	CTNAG	3 cut(s)	80, 194, 399
Hsp92II	CATG	1 cut(s)	202
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	37, 44, 63
LpnPI	CCDG	7 cut(s)	178, 386, 390, 424, 474, 485, 546
Lsp1109I	GCAGC	2 cut(s)	199, 590
LweI	GCATC	3 cut(s)	85, 431, 538
MaeI	CTAG	2 cut(s)	20, 105
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	3 cut(s)	39, 46, 65
MboI	GATC	3 cut(s)	37, 44, 63
MboII	GAAGA	5 cut(s)	199, 240, 391, 482, 557
MlsI	TGGCCA	1 cut(s)	614
MluCI	AATT	1 cut(s)	508
MluNI	TGGCCA	1 cut(s)	614
MlyI	GAGTC	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	7 cut(s)	109, 114, 202, 292, 384, 408, 546
Mox20I	TGGCCA	1 cut(s)	614
MroXI	GAANNNNTTC	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	614
MseI	TTAA	1 cut(s)	646
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	155
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	4 cut(s)	149, 161, 209, 620
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	3 cut(s)	37, 44, 63
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	3 cut(s)	409, 459, 577
OliI	CACNNNNGTG	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	474
PkrI	GCNGC	3 cut(s)	154, 214, 605
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PspN4I	GGNNCC	3 cut(s)	409, 459, 577
PspPI	GGNCC	1 cut(s)	407
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	1 cut(s)	491
SacII	CCGCGG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	646
SatI	GCNGC	3 cut(s)	153, 213, 604
Sau3AI	GATC	3 cut(s)	37, 44, 63
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	184
SetI	ASST	8 cut(s)	29, 120, 303, 395, 557, 587, 625, 640
SfaNI	GCATC	3 cut(s)	85, 431, 538
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	1 cut(s)	508
SsiI	CCGC	4 cut(s)	153, 155, 215, 252
SspMI	CTAG	2 cut(s)	20, 105
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	309
TasI	AATT	1 cut(s)	508
TauI	GCSGC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TscAI	CASTG	2 cut(s)	172, 493
TseI	GCWGC	2 cut(s)	212, 603
TspRI	CASTG	2 cut(s)	172, 493
XagI	CCTNNNNNAGG	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	2 cut(s)	20, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.