Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010902

Physical Location & Seq

Genomic Coordinates Forward (+)

66177287 .. 66178465

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTCATTGCTCGAAGTGATCACCAAGGCTTCGGCCGAGTCCCAATCGCTTGGTTCTCCATCAGAATACCCTATTGTTCTTGACCCAGATTCCATTTTCGCCAATTTGAAACCCAAACTCGATGACCCAAATCCCATCTCAGCTGCTATTCCTCTTTGTGGTTGGCAGATTTCACAGACCGATTCAGAGCTCATTGAGTTGGGTAACAAGTTCAGTGCCAAGCTTAAGAAGAAGCTCAAAAACCCAGTTAAGTTTGATGAGGCTGAGTTCTTGGGAATGGTGAATCAATTTCTTGAGAAGATCAGGGAAAAGGTTGGGGTTTCGGTTGGGGTTGATTCTAGTAATGATGGGTATACAAGGGTTTTGATTGAGAAGGTTGGGGAGTACATGGGGAAGTATGTTGCTGGTTTGGTTTTGGATGCTTGTGTTGTGTTGGAGGTTTGGGAATTAGTAGGGGCTCTGATTGCAAATGGGCTTGTTTCGAATTCTTGTTATGAGGATTTGGTTGCGAAAATCGTGGCGAAGAGGAGGACAGAGTTACTTTGTATGTGTGTTAGGTATGCTTCTGATCTTGGATCGTCGGAGTTGGTGATGATCTTGAAGTATTTTCTTAGTCCAAGTAAAGATGCTTATGGTAGCATTGTGGAGGTGAGGAAGGAATGGGAGAGCCAAGCCTTGTTAGCCGCGGAGAAGGCCAGTGATAAGAGTCTGTCGGGGAAGAAACTAAGCATGGCAAAAGAGGCTGCGGTGTTGCTTATGGTGGCATATGATGGGTTCTCTTCCGCGGAACTCTGTCTGCATTATTTGTTGGTGTCAAAGAATGTTGATGAGGTGATAATGTCGTCTGCGATTAGTAAGTTGAATGGGAAAGAGATGGTGAGTTTGCTTCGGTATTTGGGTAAGTGGCTGAAGAAGTACGAGAGGTTTCCTCAGGCAGGTCCCTGCCACAAGGCATCAACAACATTGGGTTTGAAGGCTTGTGATTGGGTTCCTAAACTTGAAGATGTTCTGAAATGCACTGGGGTGGTGCTGGATGAGAATTACTCTGCATTGGTGTTGCATCCAGAGTTTCACGAAGAGTTGAGGTCTATAAACAAAGTCGTTGGTTCCTTGACCTTGGAAGCAAGGCTCTGCTGCTCTGTGGCCAATGTAGCTGATAAGTTGAAAGCTGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

393

Amino Acids

42.99

Weight (kDa)

5.81

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18850
fragaria_vesca	FvH4_5g15370 FvH4_5g15370
malus_domestica	MD14G1195800.v1.1
prunus_persica	Prupe.5G187600_v2.0.a1 Prupe.5G187600_v2.0.a1
pyrus_communis	pycom14g16260
rosa_chinensis	RchiOBHm_Chr7g0180701
rosa_laevigata	RLG00000005239
rosa_multiflora	Rmu_sc0007457.1_g000025 Rmu_sc0023372.1_g000014 Rmu_sc0041667.1_g000001 Rmu_sc0041668.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272640
rosa_rugosa	Rorug06G0435000
rosa_samantha	Rh7AG036700 Rh7BG036500 Rh7CG038200 Rh7DG036700
rosa_wichuraiana	Rw7G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	926
AccI	GTMKAC	1 cut(s)	353
AccII	CGCG	2 cut(s)	686, 785
AciI	CCGC	5 cut(s)	684, 686, 746, 783, 785
AclWI	GGATC	1 cut(s)	583
AcoI	YGGCCR	2 cut(s)	33, 1143
AcsI	RAATTY	1 cut(s)	484
AcuI	CTGAAG	1 cut(s)	929
AfaI	GTAC	2 cut(s)	386, 917
AfiI	CCNNNNNNNGG	2 cut(s)	158, 935
AflII	CTTAAG	1 cut(s)	224
AgsI	TTSAA	6 cut(s)	109, 601, 862, 973, 1001, 1165
AleI	CACNNNNGTG	1 cut(s)	1022
AluBI	AGCT	6 cut(s)	143, 190, 223, 235, 1154, 1169
AluI	AGCT	6 cut(s)	143, 190, 223, 235, 1154, 1169
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	583
AoxI	GGCC	3 cut(s)	33, 693, 1143
ApeKI	GCWGC	3 cut(s)	143, 743, 1134
ApoI	RAATTY	1 cut(s)	484
Asp700I	GAANNNNTTC	1 cut(s)	1005
AspS9I	GGNCC	1 cut(s)	938
AsuHPI	GGTGA	6 cut(s)	13, 292, 601, 661, 844, 889
AsuII	TTCGAA	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	938
AxyI	CCTNAGG	1 cut(s)	930
BalI	TGGCCA	1 cut(s)	1145
BanII	GRGCYC	2 cut(s)	192, 460
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	130, 730, 1121
BccI	CCATC	5 cut(s)	67, 143, 341, 764, 868
BclI	TGATCA	1 cut(s)	18
BfaI	CTAG	1 cut(s)	339
BfrI	CTTAAG	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	926
BisI	GCNGC	4 cut(s)	144, 684, 744, 1135
BlsI	GCNGC	4 cut(s)	145, 685, 745, 1136
Bme18I	GGWCC	1 cut(s)	938
BmgT120I	GGNCC	1 cut(s)	938
BmiI	GGNNCC	3 cut(s)	940, 990, 1108
BmrI	ACTGGG	2 cut(s)	239, 1029
BmsI	GCATC	4 cut(s)	409, 616, 962, 1069
BmuI	ACTGGG	2 cut(s)	239, 1029
BplI	GAGNNNNNCTC	4 cut(s)	913, 945, 1028, 1060
Bpu14I	TTCGAA	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	314
BsaJI	CCNNGG	4 cut(s)	24, 684, 783, 1116
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 935
Bse1I	ACTGG	3 cut(s)	245, 696, 1024
Bse21I	CCTNAGG	1 cut(s)	930
Bse3DI	GCAATG	1 cut(s)	5
BseDI	CCNNGG	4 cut(s)	24, 684, 783, 1116
BseGI	GGATG	3 cut(s)	424, 1039, 1060
BseLI	CCNNNNNNNGG	2 cut(s)	158, 935
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	3 cut(s)	153, 255, 944
BseNI	ACTGG	3 cut(s)	245, 696, 1024
BseRI	GAGGAG	1 cut(s)	541
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	130, 730, 1121
Bsh1236I	CGCG	2 cut(s)	686, 785
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	35, 695, 1145
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	25, 924
BslI	CCNNNNNNNGG	2 cut(s)	158, 935
BsmFI	GGGAC	2 cut(s)	25, 924
BsnI	GGCC	3 cut(s)	35, 695, 1145
Bsp119I	TTCGAA	1 cut(s)	482
Bsp1286I	GDGCHC	2 cut(s)	192, 460
Bsp143I	GATC	5 cut(s)	18, 300, 568, 575, 594
BspACI	CCGC	5 cut(s)	684, 686, 746, 783, 785
BspANI	GGCC	3 cut(s)	35, 695, 1145
BspCNI	CTCAG	3 cut(s)	152, 256, 943
BspFNI	CGCG	2 cut(s)	686, 785
BspLI	GGNNCC	3 cut(s)	940, 990, 1108
BspMI	ACCTGC	1 cut(s)	926
BspPI	GGATC	1 cut(s)	583
BspT104I	TTCGAA	1 cut(s)	482
BspTI	CTTAAG	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	5
BsrI	ACTGG	3 cut(s)	245, 696, 1024
BssECI	CCNNGG	4 cut(s)	24, 684, 783, 1116
BssMI	GATC	5 cut(s)	18, 300, 568, 575, 594
BssNAI	GTATAC	1 cut(s)	354
BssT1I	CCWWGG	2 cut(s)	24, 1116
Bst1107I	GTATAC	1 cut(s)	354
Bst6I	CTCTTC	3 cut(s)	518, 784, 1071
BstAFI	CTTAAG	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	482
BstDEI	CTNAG	5 cut(s)	139, 264, 611, 725, 930
BstDSI	CCRYGG	2 cut(s)	684, 783
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	3 cut(s)	424, 1039, 1060
BstFNI	CGCG	2 cut(s)	686, 785
BstKTI	GATC	5 cut(s)	21, 303, 571, 578, 597
BstMBI	GATC	5 cut(s)	18, 300, 568, 575, 594
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	5 cut(s)	464, 680, 692, 740, 1151
BstUI	CGCG	2 cut(s)	686, 785
BstV1I	GCAGC	3 cut(s)	130, 730, 1121
BstXI	CCANNNNNNTGG	1 cut(s)	50
BstZ17I	GTATAC	1 cut(s)	354
BstZI	CGGCCG	1 cut(s)	33
Bsu36I	CCTNAGG	1 cut(s)	930
BsuRI	GGCC	3 cut(s)	35, 695, 1145
BtgI	CCRYGG	2 cut(s)	684, 783
BtsCI	GGATG	3 cut(s)	424, 1039, 1060
BtsIMutI	CAGTG	3 cut(s)	220, 703, 1017
BveI	ACCTGC	1 cut(s)	926
Cfr13I	GGNCC	1 cut(s)	938
Cfr42I	CCGCGG	2 cut(s)	687, 786
Csp6I	GTAC	2 cut(s)	385, 916
CviAII	CATG	2 cut(s)	388, 730
CviQI	GTAC	2 cut(s)	385, 916
DdeI	CTNAG	5 cut(s)	139, 264, 611, 725, 930
DpnI	GATC	5 cut(s)	20, 302, 570, 577, 596
DpnII	GATC	5 cut(s)	18, 300, 568, 575, 594
EaeI	YGGCCR	2 cut(s)	33, 1143
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	3 cut(s)	518, 784, 1071
EarI	CTCTTC	3 cut(s)	518, 784, 1071
Ecl136II	GAGCTC	1 cut(s)	190
EclXI	CGGCCG	1 cut(s)	33
Eco130I	CCWWGG	2 cut(s)	24, 1116
Eco24I	GRGCYC	2 cut(s)	192, 460
Eco47I	GGWCC	1 cut(s)	938
Eco52I	CGGCCG	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	929
Eco81I	CCTNAGG	1 cut(s)	930
EcoICRI	GAGCTC	1 cut(s)	190
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRI	GAATTC	1 cut(s)	484
EcoT14I	CCWWGG	2 cut(s)	24, 1116
EcoT38I	GRGCYC	2 cut(s)	192, 460
ErhI	CCWWGG	2 cut(s)	24, 1116
FaeI	CATG	2 cut(s)	391, 733
FaqI	GGGAC	2 cut(s)	25, 924
FatI	CATG	2 cut(s)	387, 729
FauNDI	CATATG	1 cut(s)	766
FbaI	TGATCA	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	353
Fnu4HI	GCNGC	4 cut(s)	144, 684, 744, 1135
FokI	GGATG	3 cut(s)	431, 1046, 1047
FriOI	GRGCYC	2 cut(s)	192, 460
Fsp4HI	GCNGC	4 cut(s)	144, 684, 744, 1135
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	4 cut(s)	144, 684, 744, 1135
HaeIII	GGCC	3 cut(s)	35, 695, 1145
Hin1II	CATG	2 cut(s)	391, 733
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	6 cut(s)	38, 89, 182, 283, 335, 706
HphI	GGTGA	6 cut(s)	13, 292, 601, 661, 844, 889
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	6 cut(s)	64, 187, 462, 568, 583, 1011
Hpy188III	TCNNGA	5 cut(s)	80, 293, 598, 1064, 1073
Hpy8I	GTNNAC	1 cut(s)	354
Hpy99I	CGWCG	1 cut(s)	583
HpyAV	CCTTC	4 cut(s)	367, 649, 685, 967
HpyCH4V	TGCA	5 cut(s)	467, 799, 1017, 1049, 1060
HpyF10VI	GCNNNNNNNGC	5 cut(s)	464, 680, 692, 740, 1151
HpyF3I	CTNAG	5 cut(s)	139, 264, 611, 725, 930
Hsp92II	CATG	2 cut(s)	391, 733
Ksp22I	TGATCA	1 cut(s)	18
KspI	CCGCGG	2 cut(s)	687, 786
Kzo9I	GATC	5 cut(s)	18, 300, 568, 575, 594
Lsp1109I	GCAGC	3 cut(s)	130, 730, 1121
LweI	GCATC	4 cut(s)	409, 616, 962, 1069
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	203, 537
MalI	GATC	5 cut(s)	20, 302, 570, 577, 596
MboI	GATC	5 cut(s)	18, 300, 568, 575, 594
MboII	GAAGA	8 cut(s)	241, 310, 535, 730, 771, 922, 1013, 1088
MhlI	GDGCHC	2 cut(s)	192, 460
MlsI	TGGCCA	1 cut(s)	1145
MluCI	AATT	5 cut(s)	103, 287, 446, 484, 1039
MluNI	TGGCCA	1 cut(s)	1145
MlyI	GAGTC	2 cut(s)	47, 715
MmeI	TCCRAC	2 cut(s)	414, 561
Mox20I	TGGCCA	1 cut(s)	1145
MroXI	GAANNNNTTC	1 cut(s)	1005
MscI	TGGCCA	1 cut(s)	1145
MseI	TTAA	3 cut(s)	225, 249, 1177
MslI	CAYNNNNRTG	1 cut(s)	1022
Msp20I	TGGCCA	1 cut(s)	1145
MspA1I	CMGCKG	3 cut(s)	143, 686, 785
MspCI	CTTAAG	1 cut(s)	224
MvnI	CGCG	2 cut(s)	686, 785
MwoI	GCNNNNNNNGC	5 cut(s)	464, 680, 692, 740, 1151
NdeI	CATATG	1 cut(s)	766
NdeII	GATC	5 cut(s)	18, 300, 568, 575, 594
NlaIII	CATG	2 cut(s)	391, 733
NlaIV	GGNNCC	3 cut(s)	940, 990, 1108
NmeAIII	GCCGAG	1 cut(s)	61
NspV	TTCGAA	1 cut(s)	482
OliI	CACNNNNGTG	1 cut(s)	1022
PdmI	GAANNNNTTC	1 cut(s)	1005
PfeI	GAWTC	4 cut(s)	89, 182, 283, 335
PkrI	GCNGC	4 cut(s)	145, 685, 745, 1136
PleI	GAGTC	2 cut(s)	46, 714
PpsI	GAGTC	2 cut(s)	46, 714
PpuMI	RGGWCCY	1 cut(s)	938
Psp124BI	GAGCTC	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	938
PspN4I	GGNNCC	3 cut(s)	940, 990, 1108
PspPI	GGNCC	1 cut(s)	938
PspPPI	RGGWCCY	1 cut(s)	938
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	386, 917
RsaNI	GTAC	2 cut(s)	385, 916
RseI	CAYNNNNRTG	1 cut(s)	1022
SacI	GAGCTC	1 cut(s)	192
SacII	CCGCGG	2 cut(s)	687, 786
SaqAI	TTAA	3 cut(s)	225, 249, 1177
SatI	GCNGC	4 cut(s)	144, 684, 744, 1135
Sau3AI	GATC	5 cut(s)	18, 300, 568, 575, 594
Sau96I	GGNCC	1 cut(s)	938
SchI	GAGTC	2 cut(s)	47, 715
SduI	GDGCHC	2 cut(s)	192, 460
SfaNI	GCATC	4 cut(s)	409, 616, 962, 1069
Sfr303I	CCGCGG	2 cut(s)	687, 786
SfuI	TTCGAA	1 cut(s)	482
SgrBI	CCGCGG	2 cut(s)	687, 786
SinI	GGWCC	1 cut(s)	938
SmiMI	CAYNNNNRTG	1 cut(s)	1022
SmlI	CTYRAG	2 cut(s)	224, 293
SmoI	CTYRAG	2 cut(s)	224, 293
Sse9I	AATT	5 cut(s)	103, 287, 446, 484, 1039
SsiI	CCGC	5 cut(s)	684, 686, 746, 783, 785
SspMI	CTAG	1 cut(s)	339
SstI	GAGCTC	1 cut(s)	192
StyI	CCWWGG	2 cut(s)	24, 1116
TaqI	TCGA	3 cut(s)	12, 120, 482
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	5 cut(s)	103, 287, 446, 484, 1039
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	1 cut(s)	686
TfiI	GAWTC	4 cut(s)	89, 182, 283, 335
Tru1I	TTAA	3 cut(s)	225, 249, 1177
Tru9I	TTAA	3 cut(s)	225, 249, 1177
TscAI	CASTG	3 cut(s)	220, 703, 1024
TseI	GCWGC	3 cut(s)	143, 743, 1134
TspRI	CASTG	3 cut(s)	220, 703, 1024
Vha464I	CTTAAG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	938
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	1005
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.