Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010902

Physical Location & Seq

Genomic Coordinates Reverse (-)

15473446 .. 15475017

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G187600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTCGTTGCTCGAAGTCATTACAAAGGCCTCCGCCATATCTCAAACTCAACATGCCCCATCAGACTACCCCATTGTTCTTGACCCAGATTCTATTTTTGCCAAACTGACGCCCAAACTTGATGACCCAAATCCGATGTCAGTTGCAATTCCCATGAGCGGATGGCAAATTTCACAAACCGACTCTGAGATCATCGAGTTGGGGAAGAAATTCTTCACCAAGCTTAAAAAGAAGCTCAAAAACCCGAATAATTTTGCTAAAGCTGAGTTTTTGGCAACCTTGAATCCATTTCTTGAGAGTATTAGGGAAAAAATTGGGATTTCGATTGGGGTTGATTCGTCTAATGATGGGTACACCCAGATTTTGATGAAGAAAGTTGGGTCTTTCATGGGCAAGGACGTTGCTGGTTTGGTTTTGGATGCCTGCGTTGGTTTGGAGATCTGGGAATTGGTAGGTAGTTTGATTGCAAATGGGCTTTTGCCAAATTCTTGTTATCAGAATTTGGTTCCAAAAGTTGTGGCAAAGAGGAGGTCAGATTTGCTGAGTCTTTGTGTTAAGCATGCATCGGATCTTGGGTCATCTGAGTTGCTCCTGATCTTGAAGTACTTTCTTGATCCACCTAAAGATGGTTATACTAGCACTGTGGATGTGAGGAAGGAATGGGAGAGCCAAGCCTTGTCAGCTGCTGAGAAGGCCACTGATAAGACTCTATCGGGGAAGAAACTAGGCATTGCGAAAGAGGCTGCCGTTTTGCTTATGGTGGCATATGATGGGTTCTCTTCTGCAGAACTCTGCCTGCATTATCTCTTGGCATCAAAGAATCTTGATGAAGTGATGTTGTCGGCCGCGATCAGTAAGTTGAGTGGGAGAGAGATGAAGAGTTTACTCCGGTATCTGGGGAAGTGGCTGAAGAAGTATGAGAGGTTTCCTCAGGTAGGTCCCTGTCACAAGGCATCAACAGCATTGGGTTTGAAGGCTTGTGATTGGGTTCCTAAACTTGAAGATGTTGCGAAATGCATTGGGGTGCTGCTGGATGAGAATTACTCTGCATTGGTGTTGCATCTGGAGTTTCATGACGAGCTGAGATCTATAAATGAAGTGGTTGCATCCTTGACCTTGGAAGCAAGGTTCTGCTGTTCTGTGGCCAGTGCAGCTGATACGTTGAAGGCTGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

393

Amino Acids

42.86

Weight (kDa)

6.62

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18850
fragaria_vesca	FvH4_5g15370 FvH4_5g15370
malus_domestica	MD14G1195800.v1.1
prunus_persica	Prupe.5G187600_v2.0.a1 Prupe.5G187600_v2.0.a1
pyrus_communis	pycom14g16260
rosa_chinensis	RchiOBHm_Chr7g0180701
rosa_laevigata	RLG00000005239
rosa_multiflora	Rmu_sc0007457.1_g000025 Rmu_sc0023372.1_g000014 Rmu_sc0041667.1_g000001 Rmu_sc0041668.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272640
rosa_rugosa	Rorug06G0435000
rosa_samantha	Rh7AG036700 Rh7BG036500 Rh7CG038200 Rh7DG036700
rosa_wichuraiana	Rw7G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	159
AccII	CGCG	1 cut(s)	848
AciI	CCGC	3 cut(s)	33, 159, 846
AclWI	GGATC	2 cut(s)	576, 608
AcoI	YGGCCR	2 cut(s)	843, 1143
AcsI	RAATTY	4 cut(s)	168, 209, 484, 499
AcuI	CTGAAG	1 cut(s)	929
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	2 cut(s)	353, 605
AfiI	CCNNNNNNNGG	4 cut(s)	158, 626, 895, 935
AgsI	TTSAA	5 cut(s)	283, 601, 973, 1001, 1165
AloI	GAACNNNNNNTCC	2 cut(s)	1112, 1144
AluBI	AGCT	6 cut(s)	223, 235, 263, 683, 1081, 1154
AluI	AGCT	6 cut(s)	223, 235, 263, 683, 1081, 1154
AlwI	GGATC	2 cut(s)	576, 608
AlwNI	CAGNNNCTG	1 cut(s)	686
AoxI	GGCC	4 cut(s)	27, 693, 843, 1143
ApeKI	GCWGC	4 cut(s)	683, 743, 1027, 1151
ApoI	RAATTY	4 cut(s)	168, 209, 484, 499
ArsI	GACNNNNNNTTYG	4 cut(s)	122, 154, 515, 547
Asp700I	GAANNNNTTC	2 cut(s)	209, 212
AspS9I	GGNCC	1 cut(s)	938
AsuHPI	GGTGA	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	938
AxyI	CCTNAGG	1 cut(s)	930
BaeI	ACNNNNGTAYC	2 cut(s)	875, 908
BalI	TGGCCA	1 cut(s)	1145
BbvI	GCAGC	4 cut(s)	670, 730, 1014, 1163
BccI	CCATC	5 cut(s)	67, 156, 341, 620, 764
BceAI	ACGGC	1 cut(s)	731
BfaI	CTAG	2 cut(s)	636, 725
BfmI	CTRYAG	1 cut(s)	783
BglII	AGATCT	2 cut(s)	438, 1085
BisI	GCNGC	5 cut(s)	684, 744, 846, 1028, 1152
BlsI	GCNGC	5 cut(s)	685, 745, 847, 1029, 1153
BmcAI	AGTACT	1 cut(s)	605
Bme18I	GGWCC	1 cut(s)	938
BmgT120I	GGNCC	1 cut(s)	938
BmiI	GGNNCC	3 cut(s)	507, 940, 990
BmsI	GCATC	6 cut(s)	409, 572, 821, 962, 1069, 1115
BplI	GAGNNNNNCTC	4 cut(s)	913, 945, 1028, 1060
BpmI	CTGGAG	1 cut(s)	1085
BpuEI	CTTGAG	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	1116
BsaWI	WCCGGW	1 cut(s)	888
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 626, 895, 935
Bse1I	ACTGG	1 cut(s)	1146
Bse21I	CCTNAGG	1 cut(s)	930
Bse3DI	GCAATG	1 cut(s)	729
BseDI	CCNNGG	1 cut(s)	1116
BseGI	GGATG	5 cut(s)	167, 424, 652, 1039, 1106
BseLI	CCNNNNNNNGG	4 cut(s)	158, 626, 895, 935
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	7 cut(s)	177, 255, 533, 573, 678, 944, 1073
BseNI	ACTGG	1 cut(s)	1146
BseRI	GAGGAG	1 cut(s)	541
BseX3I	CGGCCG	1 cut(s)	843
BseXI	GCAGC	4 cut(s)	670, 730, 1014, 1163
BsgI	GTGCAG	1 cut(s)	1170
Bsh1236I	CGCG	1 cut(s)	848
Bsh1285I	CGRYCG	1 cut(s)	846
BshFI	GGCC	4 cut(s)	29, 695, 845, 1145
BsiEI	CGRYCG	1 cut(s)	846
BsiSI	CCGG	1 cut(s)	889
BslFI	GGGAC	1 cut(s)	924
BslI	CCNNNNNNNGG	4 cut(s)	158, 626, 895, 935
BsmFI	GGGAC	1 cut(s)	924
BsnI	GGCC	4 cut(s)	29, 695, 845, 1145
Bsp143I	GATC	7 cut(s)	189, 438, 568, 594, 613, 849, 1085
BspACI	CCGC	3 cut(s)	33, 159, 846
BspANI	GGCC	4 cut(s)	29, 695, 845, 1145
BspCNI	CTCAG	7 cut(s)	178, 256, 534, 574, 679, 943, 1074
BspFNI	CGCG	1 cut(s)	848
BspHI	TCATGA	1 cut(s)	1072
BspLI	GGNNCC	3 cut(s)	507, 940, 990
BspMAI	CTGCAG	1 cut(s)	787
BspPI	GGATC	2 cut(s)	576, 608
BsrBI	CCGCTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	729
BsrI	ACTGG	1 cut(s)	1146
BssECI	CCNNGG	1 cut(s)	1116
BssMI	GATC	7 cut(s)	189, 438, 568, 594, 613, 849, 1085
BssNI	GRCGYC	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	1116
Bst4CI	ACNGT	1 cut(s)	643
Bst6I	CTCTTC	2 cut(s)	784, 872
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	424, 561, 797
BstDEI	CTNAG	7 cut(s)	186, 264, 542, 582, 687, 930, 1082
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	5 cut(s)	167, 424, 652, 1039, 1106
BstFNI	CGCG	1 cut(s)	848
BstKTI	GATC	7 cut(s)	192, 441, 571, 597, 616, 852, 1088
BstMBI	GATC	7 cut(s)	189, 438, 568, 594, 613, 849, 1085
BstMCI	CGRYCG	1 cut(s)	846
BstMWI	GCNNNNNNNGC	5 cut(s)	680, 692, 740, 959, 1151
BstNSI	RCATGY	2 cut(s)	56, 563
BstSFI	CTRYAG	1 cut(s)	783
BstUI	CGCG	1 cut(s)	848
BstV1I	GCAGC	4 cut(s)	670, 730, 1014, 1163
BstX2I	RGATCY	3 cut(s)	438, 568, 1085
BstYI	RGATCY	3 cut(s)	438, 568, 1085
BstZI	CGGCCG	1 cut(s)	843
Bsu36I	CCTNAGG	1 cut(s)	930
BsuRI	GGCC	4 cut(s)	29, 695, 845, 1145
BtsCI	GGATG	5 cut(s)	167, 424, 652, 1039, 1106
BtsIMutI	CAGTG	3 cut(s)	639, 696, 1153
Cac8I	GCNNGC	3 cut(s)	424, 561, 797
CaiI	CAGNNNCTG	1 cut(s)	686
CciI	TCATGA	1 cut(s)	1072
Cfr13I	GGNCC	1 cut(s)	938
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	352, 604
CspCI	CAANNNNNGTGG	2 cut(s)	498, 533
CviAII	CATG	5 cut(s)	53, 154, 388, 560, 1073
CviQI	GTAC	2 cut(s)	352, 604
DdeI	CTNAG	7 cut(s)	186, 264, 542, 582, 687, 930, 1082
DpnI	GATC	7 cut(s)	191, 440, 570, 596, 615, 851, 1087
DpnII	GATC	7 cut(s)	189, 438, 568, 594, 613, 849, 1085
EaeI	YGGCCR	2 cut(s)	843, 1143
EagI	CGGCCG	1 cut(s)	843
Eam1104I	CTCTTC	2 cut(s)	784, 872
EarI	CTCTTC	2 cut(s)	784, 872
EciI	GGCGGA	1 cut(s)	22
EclXI	CGGCCG	1 cut(s)	843
Eco130I	CCWWGG	1 cut(s)	1116
Eco147I	AGGCCT	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	938
Eco52I	CGGCCG	1 cut(s)	843
Eco57I	CTGAAG	1 cut(s)	929
Eco81I	CCTNAGG	1 cut(s)	930
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoO109I	RGGNCCY	1 cut(s)	938
EcoT14I	CCWWGG	1 cut(s)	1116
EcoT22I	ATGCAT	2 cut(s)	565, 1019
ErhI	CCWWGG	1 cut(s)	1116
FaeI	CATG	5 cut(s)	56, 157, 391, 563, 1076
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	1 cut(s)	924
FatI	CATG	5 cut(s)	52, 153, 387, 559, 1072
FauNDI	CATATG	1 cut(s)	766
Fnu4HI	GCNGC	5 cut(s)	684, 744, 846, 1028, 1152
FokI	GGATG	5 cut(s)	174, 431, 659, 1046, 1093
Fsp4HI	GCNGC	5 cut(s)	684, 744, 846, 1028, 1152
FspBI	CTAG	2 cut(s)	636, 725
GluI	GCNGC	5 cut(s)	684, 744, 846, 1028, 1152
GsuI	CTGGAG	1 cut(s)	1085
HaeIII	GGCC	4 cut(s)	29, 695, 845, 1145
HapII	CCGG	1 cut(s)	889
HgaI	GACGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	5 cut(s)	56, 157, 391, 563, 1076
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	7 cut(s)	89, 182, 283, 335, 544, 706, 820
HpaII	CCGG	1 cut(s)	889
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	2 cut(s)	354, 884
Hpy188I	TCNGA	7 cut(s)	64, 135, 187, 498, 535, 568, 583
Hpy188III	TCNNGA	8 cut(s)	80, 293, 592, 598, 611, 824, 1064, 1073
Hpy8I	GTNNAC	2 cut(s)	354, 884
HpyAV	CCTTC	4 cut(s)	649, 685, 967, 1159
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4IV	ACGT	2 cut(s)	399, 1160
HpyF10VI	GCNNNNNNNGC	5 cut(s)	680, 692, 740, 959, 1151
HpyF3I	CTNAG	7 cut(s)	186, 264, 542, 582, 687, 930, 1082
HpySE526I	ACGT	2 cut(s)	399, 1160
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	5 cut(s)	56, 157, 391, 563, 1076
Kzo9I	GATC	7 cut(s)	189, 438, 568, 594, 613, 849, 1085
LmnI	GCTCC	1 cut(s)	594
Lsp1109I	GCAGC	4 cut(s)	670, 730, 1014, 1163
LweI	GCATC	6 cut(s)	409, 572, 821, 962, 1069, 1115
MaeI	CTAG	2 cut(s)	636, 725
MaeII	ACGT	2 cut(s)	399, 1160
MaeIII	GTNAC	1 cut(s)	944
MalI	GATC	7 cut(s)	191, 440, 570, 596, 615, 851, 1087
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	7 cut(s)	189, 438, 568, 594, 613, 849, 1085
MboII	GAAGA	8 cut(s)	205, 217, 382, 730, 771, 889, 922, 1013
MflI	RGATCY	3 cut(s)	438, 568, 1085
MlsI	TGGCCA	1 cut(s)	1145
MluCI	AATT	9 cut(s)	147, 168, 209, 250, 312, 446, 484, 499, 1039
MluNI	TGGCCA	1 cut(s)	1145
MlyI	GAGTC	3 cut(s)	176, 553, 700
MnlI	CCTC	7 cut(s)	40, 519, 522, 645, 733, 915, 939
Mox20I	TGGCCA	1 cut(s)	1145
Mph1103I	ATGCAT	2 cut(s)	565, 1019
MroXI	GAANNNNTTC	2 cut(s)	209, 212
MscI	TGGCCA	1 cut(s)	1145
MseI	TTAA	3 cut(s)	225, 555, 1177
MslI	CAYNNNNRTG	1 cut(s)	1022
Msp20I	TGGCCA	1 cut(s)	1145
MspA1I	CMGCKG	2 cut(s)	683, 1154
MspI	CCGG	1 cut(s)	889
MvnI	CGCG	1 cut(s)	848
MwoI	GCNNNNNNNGC	5 cut(s)	680, 692, 740, 959, 1151
NdeI	CATATG	1 cut(s)	766
NdeII	GATC	7 cut(s)	189, 438, 568, 594, 613, 849, 1085
NlaIII	CATG	5 cut(s)	56, 157, 391, 563, 1076
NlaIV	GGNNCC	3 cut(s)	507, 940, 990
NmuCI	GTSAC	1 cut(s)	944
NsiI	ATGCAT	2 cut(s)	565, 1019
NspI	RCATGY	2 cut(s)	56, 563
PaeI	GCATGC	1 cut(s)	563
PagI	TCATGA	1 cut(s)	1072
PceI	AGGCCT	1 cut(s)	29
PdmI	GAANNNNTTC	2 cut(s)	209, 212
PfeI	GAWTC	4 cut(s)	89, 283, 335, 820
PkrI	GCNGC	5 cut(s)	685, 745, 847, 1029, 1153
PleI	GAGTC	3 cut(s)	176, 552, 700
PpsI	GAGTC	3 cut(s)	176, 552, 700
PpuMI	RGGWCCY	1 cut(s)	938
Psp5II	RGGWCCY	1 cut(s)	938
PspN4I	GGNNCC	3 cut(s)	507, 940, 990
PspPI	GGNCC	1 cut(s)	938
PspPPI	RGGWCCY	1 cut(s)	938
PstI	CTGCAG	1 cut(s)	787
PstNI	CAGNNNCTG	1 cut(s)	686
PsuI	RGATCY	3 cut(s)	438, 568, 1085
PvuII	CAGCTG	2 cut(s)	683, 1154
RsaI	GTAC	2 cut(s)	353, 605
RsaNI	GTAC	2 cut(s)	352, 604
RseI	CAYNNNNRTG	1 cut(s)	1022
SaqAI	TTAA	3 cut(s)	225, 555, 1177
SatI	GCNGC	5 cut(s)	684, 744, 846, 1028, 1152
Sau3AI	GATC	7 cut(s)	189, 438, 568, 594, 613, 849, 1085
Sau96I	GGNCC	1 cut(s)	938
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	3 cut(s)	176, 553, 700
SfaNI	GCATC	6 cut(s)	409, 572, 821, 962, 1069, 1115
SfcI	CTRYAG	1 cut(s)	783
SinI	GGWCC	1 cut(s)	938
SmiMI	CAYNNNNRTG	1 cut(s)	1022
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	563
Sse9I	AATT	9 cut(s)	147, 168, 209, 250, 312, 446, 484, 499, 1039
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	3 cut(s)	33, 159, 846
SspMI	CTAG	2 cut(s)	636, 725
StuI	AGGCCT	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	1116
TaaI	ACNGT	1 cut(s)	643
TaiI	ACGT	2 cut(s)	402, 1163
TaqI	TCGA	3 cut(s)	12, 195, 323
TasI	AATT	9 cut(s)	147, 168, 209, 250, 312, 446, 484, 499, 1039
TatI	WGTACW	1 cut(s)	603
TauI	GCSGC	1 cut(s)	848
TfiI	GAWTC	4 cut(s)	89, 283, 335, 820
Tru1I	TTAA	3 cut(s)	225, 555, 1177
Tru9I	TTAA	3 cut(s)	225, 555, 1177
TscAI	CASTG	3 cut(s)	646, 703, 1153
TseFI	GTSAC	1 cut(s)	944
TseI	GCWGC	4 cut(s)	683, 743, 1027, 1151
Tsp45I	GTSAC	1 cut(s)	944
TspDTI	ATGAA	6 cut(s)	376, 383, 843, 890, 1061, 1110
TspRI	CASTG	3 cut(s)	646, 703, 1153
VpaK11BI	GGWCC	1 cut(s)	938
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	4 cut(s)	168, 209, 484, 499
XceI	RCATGY	2 cut(s)	56, 563
XmnI	GAANNNNTTC	2 cut(s)	209, 212
XspI	CTAG	2 cut(s)	636, 725
ZrmI	AGTACT	1 cut(s)	605
Zsp2I	ATGCAT	2 cut(s)	565, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.