Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010902

Physical Location & Seq

Genomic Coordinates Reverse (-)

18592166 .. 18593332

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTCGTTGCTCGAAGTCATTGCGAGAGCCTCGGCCAAATCCCAAACCCAATCCGCCCCATCAGACTACCCCATCGTTCTTGACCCGGAACCCATTTTTGAGAATTTGAAACCCAAATTCGACGATCCAAATGCCTCGGCAGCTGCAATCCCAATCGAAGGATGGAAAATCTCACAAACCGACTCCGAGCTCATCGATTCGGGAAAGAAGTTCTTCACCAAGCTCCAAAAGAAGCTCAAAAACCCGACCAATTTCACCAAAGTTGAGTTCTTGGGAATCCTAAATCCGTTTCTCGAGAACATTTGGGAGAAAAAGAAAGCTGGGGAATCGATTGGGGTCGATTCGTCGAATGATGGGTATTCCCGGGTTTTGATTGAGAAAGTTGGGAATTTGATTGGCAAGGATGTTGCTGGTTTGGTTTTGGATTCCTGTGTTGTTTTGGAGATTTGGGATTTGGTAGGTGCTTTGATTGCAAATGGGGTTTTCCCCAATTCTTGTTATCAGCATTTGGTTCCGAAACTCGTTGCGAAGAGGAGGTCGGAACTGCTTTGTCTTTGTGTTAAGCATGCTTCTGATCTCGGGTCATCGGAGTTGCTGCTGATCTTGAAGTACTTCCTTGATCCGCCTAAAGACAGTTATGCTAGCTCCATGGATGTGAGGAAGGAATGGGAGAGCCGGGCATTGGCCGCGGCTCAGAAGGCTGGAGATCAGAGTCTCTCAGACAAGAAATTAAGAGTTGCGAAAGATGTTGCAGTTTTGCTCATGGTAGCGTATGATGGGTTCTCTTCTGCAGAACTCTGCCTGCATTATCTGTTGGCTTCGAAGAACCTCGATGAGGTGATGTTTTCGGCCGCGATTAGTAAGCTGAGTGGGAAGGAGATGAAGAGCTTGCTGCGGTATTTGGGTAAGTGGCTGAAGAAGTATGAGAGGTTTCCTCAGGCATCAACAGCGTCGGGTTTGAAGGCTTGTGATTGGGTTCCTAAGCTCGAAGATGTTGCAAAATGTATTGGGTTGGTGCTGGACGAGAATTATTCTGCATTGGTGTTGCATCCGGAGTTTCACCAAGAGCTGAGATCGATAAACGAAGTGGTTTCTTCCTTGACCTTGGAAGCAAGGCCTTGCTGTTCTGTGGCCAATGTAGCTGGTAAATTGATGGCGGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

42.72

Weight (kDa)

6.56

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18850
fragaria_vesca	FvH4_5g15370 FvH4_5g15370
malus_domestica	MD14G1195800.v1.1
prunus_persica	Prupe.5G187600_v2.0.a1 Prupe.5G187600_v2.0.a1
pyrus_communis	pycom14g16260
rosa_chinensis	RchiOBHm_Chr7g0180701
rosa_laevigata	RLG00000005239
rosa_multiflora	Rmu_sc0007457.1_g000025 Rmu_sc0023372.1_g000014 Rmu_sc0041667.1_g000001 Rmu_sc0041668.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272640
rosa_rugosa	Rorug06G0435000
rosa_samantha	Rh7AG036700 Rh7BG036500 Rh7CG038200 Rh7DG036700
rosa_wichuraiana	Rw7G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	689, 854
AccIII	TCCGGA	1 cut(s)	1051
AciI	CCGC	7 cut(s)	54, 623, 687, 689, 852, 895, 1157
AclWI	GGATC	2 cut(s)	119, 614
AcoI	YGGCCR	4 cut(s)	33, 684, 849, 1131
AcsI	RAATTY	4 cut(s)	103, 116, 388, 1161
AcuI	CTGAAG	1 cut(s)	935
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	3 cut(s)	158, 682, 835
AgsI	TTSAA	3 cut(s)	109, 607, 961
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	719
AlwI	GGATC	2 cut(s)	119, 614
Ama87I	CYCGRG	3 cut(s)	293, 363, 578
Aor13HI	TCCGGA	1 cut(s)	1051
AoxI	GGCC	5 cut(s)	33, 684, 849, 1115, 1131
ApeKI	GCWGC	4 cut(s)	140, 143, 595, 892
ApoI	RAATTY	4 cut(s)	103, 116, 388, 1161
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
Asp700I	GAANNNNTTC	2 cut(s)	212, 611
AsuC2I	CCSGG	4 cut(s)	86, 364, 365, 677
AsuHPI	GGTGA	4 cut(s)	208, 247, 850, 1052
AsuII	TTCGAA	1 cut(s)	821
AsuNHI	GCTAGC	1 cut(s)	641
AvaI	CYCGRG	3 cut(s)	293, 363, 578
AxyI	CCTNAGG	1 cut(s)	936
BalI	TGGCCA	1 cut(s)	1133
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	130, 152, 582, 879
BccI	CCATC	6 cut(s)	67, 80, 156, 347, 770, 1147
BcgI	CGANNNNNNTGC	5 cut(s)	36, 113, 147, 977, 1011
BcnI	CCSGG	4 cut(s)	86, 364, 365, 677
BcoDI	GTCTC	1 cut(s)	719
BfaI	CTAG	1 cut(s)	642
BfmI	CTRYAG	1 cut(s)	789
BisI	GCNGC	7 cut(s)	141, 144, 596, 687, 690, 852, 893
BlsI	GCNGC	7 cut(s)	142, 145, 597, 688, 691, 853, 894
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	4 cut(s)	86, 364, 365, 677
BmeT110I	CYCGRG	3 cut(s)	293, 363, 578
BmiI	GGNNCC	3 cut(s)	90, 513, 978
BmrFI	CCNGG	4 cut(s)	86, 364, 365, 677
BmsI	GCATC	2 cut(s)	950, 1057
BmtI	GCTAGC	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	919, 951
BpmI	CTGGAG	1 cut(s)	723
Bpu10I	CCTNAGC	1 cut(s)	981
Bpu14I	TTCGAA	1 cut(s)	821
BpuMI	CCSGG	4 cut(s)	86, 364, 365, 677
Bsa29I	ATCGAT	3 cut(s)	195, 329, 1076
BsaJI	CCNNGG	6 cut(s)	30, 135, 363, 648, 687, 1104
BsaWI	WCCGGW	1 cut(s)	1051
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 682, 835
Bse21I	CCTNAGG	1 cut(s)	936
Bse3DI	GCAATG	1 cut(s)	18
BseAI	TCCGGA	1 cut(s)	1051
BseCI	ATCGAT	3 cut(s)	195, 329, 1076
BseDI	CCNNGG	6 cut(s)	30, 135, 363, 648, 687, 1104
BseGI	GGATG	4 cut(s)	167, 409, 658, 1048
BseLI	CCNNNNNNNGG	3 cut(s)	158, 682, 835
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	5 cut(s)	707, 732, 857, 950, 1061
BseRI	GAGGAG	1 cut(s)	547
BseX3I	CGGCCG	1 cut(s)	849
BseXI	GCAGC	4 cut(s)	130, 152, 582, 879
BseYI	CCCAGC	1 cut(s)	320
Bsh1236I	CGCG	2 cut(s)	689, 854
Bsh1285I	CGRYCG	1 cut(s)	852
BshFI	GGCC	5 cut(s)	35, 686, 851, 1117, 1133
BshVI	ATCGAT	3 cut(s)	195, 329, 1076
BsiEI	CGRYCG	1 cut(s)	852
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	3 cut(s)	293, 363, 578
BsiSI	CCGG	4 cut(s)	86, 364, 676, 1052
BslI	CCNNNNNNNGG	3 cut(s)	158, 682, 835
BsmAI	GTCTC	1 cut(s)	719
BsnI	GGCC	5 cut(s)	35, 686, 851, 1117, 1133
BsoBI	CYCGRG	3 cut(s)	293, 363, 578
Bsp119I	TTCGAA	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp13I	TCCGGA	1 cut(s)	1051
Bsp143I	GATC	6 cut(s)	124, 574, 600, 619, 706, 1073
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	7 cut(s)	54, 623, 687, 689, 852, 895, 1157
BspANI	GGCC	5 cut(s)	35, 686, 851, 1117, 1133
BspCNI	CTCAG	5 cut(s)	706, 731, 858, 949, 1062
BspDI	ATCGAT	3 cut(s)	195, 329, 1076
BspEI	TCCGGA	1 cut(s)	1051
BspFNI	CGCG	2 cut(s)	689, 854
BspLI	GGNNCC	3 cut(s)	90, 513, 978
BspMAI	CTGCAG	1 cut(s)	793
BspOI	GCTAGC	1 cut(s)	645
BspPI	GGATC	2 cut(s)	119, 614
BspQI	GCTCTTC	1 cut(s)	878
BspT104I	TTCGAA	1 cut(s)	821
BsrDI	GCAATG	1 cut(s)	18
BssECI	CCNNGG	6 cut(s)	30, 135, 363, 648, 687, 1104
BssMI	GATC	6 cut(s)	124, 574, 600, 619, 706, 1073
BssT1I	CCWWGG	2 cut(s)	648, 1104
Bst4CI	ACNGT	1 cut(s)	635
Bst6I	CTCTTC	3 cut(s)	524, 790, 878
BstBI	TTCGAA	1 cut(s)	821
BstC8I	GCNNGC	4 cut(s)	567, 643, 803, 890
BstDEI	CTNAG	6 cut(s)	693, 718, 866, 936, 981, 1070
BstDSI	CCRYGG	2 cut(s)	648, 687
BstENI	CCTNNNNNAGG	1 cut(s)	833
BstF5I	GGATG	4 cut(s)	167, 409, 658, 1048
BstFNI	CGCG	2 cut(s)	689, 854
BstKTI	GATC	6 cut(s)	127, 577, 603, 622, 709, 1076
BstMAI	GTCTC	1 cut(s)	719
BstMBI	GATC	6 cut(s)	124, 574, 600, 619, 706, 1073
BstMCI	CGRYCG	1 cut(s)	852
BstMWI	GCNNNNNNNGC	6 cut(s)	140, 470, 686, 698, 947, 1139
BstNSI	RCATGY	1 cut(s)	569
BstSCI	CCNGG	4 cut(s)	84, 362, 363, 675
BstSFI	CTRYAG	1 cut(s)	789
BstUI	CGCG	2 cut(s)	689, 854
BstV1I	GCAGC	4 cut(s)	130, 152, 582, 879
BstZI	CGGCCG	1 cut(s)	849
Bsu15I	ATCGAT	3 cut(s)	195, 329, 1076
Bsu36I	CCTNAGG	1 cut(s)	936
BsuRI	GGCC	5 cut(s)	35, 686, 851, 1117, 1133
BsuTUI	ATCGAT	3 cut(s)	195, 329, 1076
BtgI	CCRYGG	2 cut(s)	648, 687
BtsCI	GGATG	4 cut(s)	167, 409, 658, 1048
Cac8I	GCNNGC	4 cut(s)	567, 643, 803, 890
Cfr42I	CCGCGG	1 cut(s)	690
Cfr9I	CCCGGG	1 cut(s)	363
ClaI	ATCGAT	3 cut(s)	195, 329, 1076
CseI	GACGC	1 cut(s)	939
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	3 cut(s)	566, 649, 763
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	6 cut(s)	693, 718, 866, 936, 981, 1070
DpnI	GATC	6 cut(s)	126, 576, 602, 621, 708, 1075
DpnII	GATC	6 cut(s)	124, 574, 600, 619, 706, 1073
EaeI	YGGCCR	4 cut(s)	33, 684, 849, 1131
EagI	CGGCCG	1 cut(s)	849
Eam1104I	CTCTTC	3 cut(s)	524, 790, 878
EarI	CTCTTC	3 cut(s)	524, 790, 878
EciI	GGCGGA	2 cut(s)	43, 612
Ecl136II	GAGCTC	1 cut(s)	190
EclXI	CGGCCG	1 cut(s)	849
Eco130I	CCWWGG	2 cut(s)	648, 1104
Eco147I	AGGCCT	1 cut(s)	1117
Eco24I	GRGCYC	1 cut(s)	192
Eco52I	CGGCCG	1 cut(s)	849
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	935
Eco81I	CCTNAGG	1 cut(s)	936
Eco88I	CYCGRG	3 cut(s)	293, 363, 578
EcoICRI	GAGCTC	1 cut(s)	190
EcoNI	CCTNNNNNAGG	1 cut(s)	833
EcoT14I	CCWWGG	2 cut(s)	648, 1104
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	2 cut(s)	648, 1104
FaeI	CATG	3 cut(s)	569, 652, 766
FaiI	YATR	6 cut(s)	567, 639, 650, 764, 774, 924
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	3 cut(s)	565, 648, 762
Fnu4HI	GCNGC	7 cut(s)	141, 144, 596, 687, 690, 852, 893
FokI	GGATG	4 cut(s)	174, 416, 665, 1035
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	7 cut(s)	141, 144, 596, 687, 690, 852, 893
FspBI	CTAG	1 cut(s)	642
GluI	GCNGC	7 cut(s)	141, 144, 596, 687, 690, 852, 893
GsaI	CCCAGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	723
HaeIII	GGCC	5 cut(s)	35, 686, 851, 1117, 1133
HapII	CCGG	4 cut(s)	86, 364, 676, 1052
HgaI	GACGC	1 cut(s)	939
Hin1II	CATG	3 cut(s)	569, 652, 766
HinfI	GANTC	7 cut(s)	182, 197, 276, 326, 341, 425, 712
HpaII	CCGG	4 cut(s)	86, 364, 676, 1052
HphI	GGTGA	4 cut(s)	208, 247, 850, 1052
Hpy188I	TCNGA	9 cut(s)	64, 187, 516, 541, 574, 589, 696, 711, 721
Hpy188III	TCNNGA	6 cut(s)	80, 201, 293, 295, 604, 1052
Hpy99I	CGWCG	3 cut(s)	125, 349, 955
HpyAV	CCTTC	5 cut(s)	152, 655, 691, 868, 955
HpyCH4III	ACNGT	1 cut(s)	635
HpyCH4V	TGCA	8 cut(s)	146, 473, 752, 791, 805, 998, 1037, 1048
HpyF10VI	GCNNNNNNNGC	6 cut(s)	140, 470, 686, 698, 947, 1139
HpyF3I	CTNAG	6 cut(s)	693, 718, 866, 936, 981, 1070
Hsp92II	CATG	3 cut(s)	569, 652, 766
Kpn2I	TCCGGA	1 cut(s)	1051
KspI	CCGCGG	1 cut(s)	690
Kzo9I	GATC	6 cut(s)	124, 574, 600, 619, 706, 1073
LguI	GCTCTTC	1 cut(s)	878
LmnI	GCTCC	2 cut(s)	228, 650
Lsp1109I	GCAGC	4 cut(s)	130, 152, 582, 879
LweI	GCATC	2 cut(s)	950, 1057
MaeI	CTAG	1 cut(s)	642
MalI	GATC	6 cut(s)	126, 576, 602, 621, 708, 1075
MboI	GATC	6 cut(s)	124, 574, 600, 619, 706, 1073
MboII	GAAGA	8 cut(s)	205, 541, 777, 835, 895, 928, 1001, 1086
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	1133
MluCI	AATT	9 cut(s)	103, 116, 250, 388, 490, 728, 1027, 1148, 1161
MluNI	TGGCCA	1 cut(s)	1133
MlyI	GAGTC	2 cut(s)	176, 721
MmeI	TCCRAC	1 cut(s)	519
MnlI	CCTC	9 cut(s)	40, 145, 525, 528, 651, 829, 839, 921, 945
Mox20I	TGGCCA	1 cut(s)	1133
MroI	TCCGGA	1 cut(s)	1051
MroXI	GAANNNNTTC	2 cut(s)	212, 611
MscI	TGGCCA	1 cut(s)	1133
MseI	TTAA	2 cut(s)	561, 731
MslI	CAYNNNNRTG	1 cut(s)	653
Msp20I	TGGCCA	1 cut(s)	1133
MspA1I	CMGCKG	2 cut(s)	143, 689
MspI	CCGG	4 cut(s)	86, 364, 676, 1052
MspR9I	CCNGG	4 cut(s)	86, 364, 365, 677
MvnI	CGCG	2 cut(s)	689, 854
MwoI	GCNNNNNNNGC	6 cut(s)	140, 470, 686, 698, 947, 1139
NciI	CCSGG	4 cut(s)	86, 364, 365, 677
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	6 cut(s)	124, 574, 600, 619, 706, 1073
NheI	GCTAGC	1 cut(s)	641
NlaIII	CATG	3 cut(s)	569, 652, 766
NlaIV	GGNNCC	3 cut(s)	90, 513, 978
NmeAIII	GCCGAG	2 cut(s)	11, 116
NspI	RCATGY	1 cut(s)	569
NspV	TTCGAA	1 cut(s)	821
PaeI	GCATGC	1 cut(s)	569
PaeR7I	CTCGAG	1 cut(s)	293
PceI	AGGCCT	1 cut(s)	1117
PciSI	GCTCTTC	1 cut(s)	878
PdmI	GAANNNNTTC	2 cut(s)	212, 611
PfeI	GAWTC	5 cut(s)	197, 276, 326, 341, 425
PkrI	GCNGC	7 cut(s)	142, 145, 597, 688, 691, 853, 894
PleI	GAGTC	2 cut(s)	176, 720
PpsI	GAGTC	2 cut(s)	176, 720
Psp124BI	GAGCTC	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	320
PspN4I	GGNNCC	3 cut(s)	90, 513, 978
PsrI	GAACNNNNNNTAC	2 cut(s)	764, 796
PstI	CTGCAG	1 cut(s)	793
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
RseI	CAYNNNNRTG	1 cut(s)	653
SacI	GAGCTC	1 cut(s)	192
SacII	CCGCGG	1 cut(s)	690
SapI	GCTCTTC	1 cut(s)	878
SaqAI	TTAA	2 cut(s)	561, 731
SatI	GCNGC	7 cut(s)	141, 144, 596, 687, 690, 852, 893
Sau3AI	GATC	6 cut(s)	124, 574, 600, 619, 706, 1073
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	2 cut(s)	176, 721
ScrFI	CCNGG	4 cut(s)	86, 364, 365, 677
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	2 cut(s)	950, 1057
SfcI	CTRYAG	1 cut(s)	789
Sfr274I	CTCGAG	1 cut(s)	293
Sfr303I	CCGCGG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	821
SgrBI	CCGCGG	1 cut(s)	690
SlaI	CTCGAG	1 cut(s)	293
SmaI	CCCGGG	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	569
Sse9I	AATT	9 cut(s)	103, 116, 250, 388, 490, 728, 1027, 1148, 1161
SseBI	AGGCCT	1 cut(s)	1117
SsiI	CCGC	7 cut(s)	54, 623, 687, 689, 852, 895, 1157
SspMI	CTAG	1 cut(s)	642
SstI	GAGCTC	1 cut(s)	192
StuI	AGGCCT	1 cut(s)	1117
StyD4I	CCNGG	4 cut(s)	84, 362, 363, 675
StyI	CCWWGG	2 cut(s)	648, 1104
TaaI	ACNGT	1 cut(s)	635
TasI	AATT	9 cut(s)	103, 116, 250, 388, 490, 728, 1027, 1148, 1161
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	3 cut(s)	689, 692, 854
TfiI	GAWTC	5 cut(s)	197, 276, 326, 341, 425
Tru1I	TTAA	2 cut(s)	561, 731
Tru9I	TTAA	2 cut(s)	561, 731
TseI	GCWGC	4 cut(s)	140, 143, 595, 892
TspDTI	ATGAA	1 cut(s)	896
TspGWI	ACGGA	1 cut(s)	276
TspMI	CCCGGG	1 cut(s)	363
XagI	CCTNNNNNAGG	1 cut(s)	833
XapI	RAATTY	4 cut(s)	103, 116, 388, 1161
XceI	RCATGY	1 cut(s)	569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XhoI	CTCGAG	1 cut(s)	293
XmaI	CCCGGG	1 cut(s)	363
XmnI	GAANNNNTTC	2 cut(s)	212, 611
XspI	CTAG	1 cut(s)	642
ZrmI	AGTACT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.