Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007457.1

Orthogroup ID

OG0010902

Physical Location & Seq

Genomic Coordinates Forward (+)

131672 .. 132259

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007457.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgatcttgaagtattttcttagtccaagtaaagatgcttatgctagcattgtggaggtgaggaaggaatgggagagccaagccttgttagccgcggagaaggccagtgataagagtctgtcggggaagaaactaagcatggcaaaagaggctgcggtgttacttatggtggcatatgatgggttctcttccgccgaactctgtctgcattatttattggtgtcaaagaatgttgatgaggtgatactgtcgtctgcgattagtaagttgaatgggaaagagatggtgagtttgcttcggtatttgggtaagtggctgaagaagtacgagaggtttcctcaggcaggcccctgccacaaggcatcaacaacattgggtttgaaggcttgtgattgggttcctaaacttgaagatgttctgaaatgcactggggtggtgctggatgagaattactctgcattggtgttgcatccagagtttcacgaagagttgaggtctataaacaaagtcgttggttccttgaccttggaagcaaggctctgctgctctgtggccaatgtagctgataagttgaaagctgaagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.54

Weight (kDa)

8.14

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18850
fragaria_vesca	FvH4_5g15370 FvH4_5g15370
malus_domestica	MD14G1195800.v1.1
prunus_persica	Prupe.5G187600_v2.0.a1 Prupe.5G187600_v2.0.a1
pyrus_communis	pycom14g16260
rosa_chinensis	RchiOBHm_Chr7g0180701
rosa_laevigata	RLG00000005239
rosa_multiflora	Rmu_sc0007457.1_g000025 Rmu_sc0023372.1_g000014 Rmu_sc0041667.1_g000001 Rmu_sc0041668.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272640
rosa_rugosa	Rorug06G0435000
rosa_samantha	Rh7AG036700 Rh7BG036500 Rh7CG038200 Rh7DG036700
rosa_wichuraiana	Rw7G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	95
AciI	CCGC	4 cut(s)	93, 95, 155, 192
AcoI	YGGCCR	1 cut(s)	552
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	5 cut(s)	10, 271, 382, 410, 574
AleI	CACNNNNGTG	1 cut(s)	431
AluBI	AGCT	2 cut(s)	563, 578
AluI	AGCT	2 cut(s)	563, 578
AoxI	GGCC	3 cut(s)	102, 346, 552
ApeKI	GCWGC	2 cut(s)	152, 543
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	3 cut(s)	70, 253, 298
AsuNHI	GCTAGC	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	339
BaeI	ACNNNNGTAYC	2 cut(s)	236, 269
BalI	TGGCCA	1 cut(s)	554
BbvI	GCAGC	2 cut(s)	139, 530
BccI	CCATC	2 cut(s)	173, 277
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	3 cut(s)	93, 153, 544
BlsI	GCNGC	3 cut(s)	94, 154, 545
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	3 cut(s)	349, 399, 517
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	3 cut(s)	25, 371, 478
BmtI	GCTAGC	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	438
BplI	GAGNNNNNCTC	4 cut(s)	322, 354, 437, 469
BsaJI	CCNNGG	2 cut(s)	93, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	2 cut(s)	105, 433
Bse21I	CCTNAGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	93, 525
BseGI	GGATG	2 cut(s)	448, 469
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	2 cut(s)	105, 433
BseXI	GCAGC	2 cut(s)	139, 530
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	3 cut(s)	104, 348, 554
BslI	CCNNNNNNNGG	1 cut(s)	344
BsnI	GGCC	3 cut(s)	104, 348, 554
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	4 cut(s)	93, 95, 155, 192
BspANI	GGCC	3 cut(s)	104, 348, 554
BspCNI	CTCAG	1 cut(s)	352
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	3 cut(s)	349, 399, 517
BspOI	GCTAGC	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	105, 433
BssECI	CCNNGG	2 cut(s)	93, 525
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	525
Bst4CI	ACNGT	1 cut(s)	249
Bst6I	CTCTTC	2 cut(s)	193, 480
BstC8I	GCNNGC	2 cut(s)	46, 346
BstDEI	CTNAG	3 cut(s)	20, 134, 339
BstDSI	CCRYGG	1 cut(s)	93
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	448, 469
BstFNI	CGCG	1 cut(s)	95
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 101, 149, 560
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	2 cut(s)	139, 530
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	104, 348, 554
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	448, 469
BtsIMutI	CAGTG	2 cut(s)	112, 426
Cac8I	GCNNGC	2 cut(s)	46, 346
Cfr13I	GGNCC	1 cut(s)	347
Cfr42I	CCGCGG	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	1 cut(s)	139
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	3 cut(s)	20, 134, 339
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	2 cut(s)	193, 480
EarI	CTCTTC	2 cut(s)	193, 480
EciI	GGCGGA	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	338
Eco81I	CCTNAGG	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	1 cut(s)	142
FaiI	YATR	6 cut(s)	42, 140, 167, 175, 177, 500
FatI	CATG	1 cut(s)	138
FauNDI	CATATG	1 cut(s)	175
Fnu4HI	GCNGC	3 cut(s)	93, 153, 544
FokI	GGATG	2 cut(s)	455, 456
Fsp4HI	GCNGC	3 cut(s)	93, 153, 544
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	3 cut(s)	93, 153, 544
HaeIII	GGCC	3 cut(s)	104, 348, 554
Hin1II	CATG	1 cut(s)	142
HinfI	GANTC	1 cut(s)	115
HphI	GGTGA	3 cut(s)	70, 253, 298
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	3 cut(s)	7, 473, 482
HpyAV	CCTTC	3 cut(s)	58, 94, 376
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	208, 426, 458, 469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 101, 149, 560
HpyF3I	CTNAG	3 cut(s)	20, 134, 339
Hsp92II	CATG	1 cut(s)	142
KspI	CCGCGG	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	7 cut(s)	118, 326, 330, 364, 414, 425, 486
Lsp1109I	GCAGC	2 cut(s)	139, 530
LweI	GCATC	3 cut(s)	25, 371, 478
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	5 cut(s)	139, 180, 331, 422, 497
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	1 cut(s)	448
MluNI	TGGCCA	1 cut(s)	554
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	7 cut(s)	49, 54, 142, 232, 324, 348, 486
Mox20I	TGGCCA	1 cut(s)	554
MroXI	GAANNNNTTC	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	1 cut(s)	586
MslI	CAYNNNNRTG	1 cut(s)	431
Msp20I	TGGCCA	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	4 cut(s)	89, 101, 149, 560
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	1 cut(s)	3
NheI	GCTAGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	3 cut(s)	349, 399, 517
OliI	CACNNNNGTG	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	414
PkrI	GCNGC	3 cut(s)	94, 154, 545
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PspN4I	GGNNCC	3 cut(s)	349, 399, 517
PspPI	GGNCC	1 cut(s)	347
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	431
SacII	CCGCGG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	586
SatI	GCNGC	3 cut(s)	93, 153, 544
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	124
SetI	ASST	7 cut(s)	60, 243, 335, 497, 527, 565, 580
SfaNI	GCATC	3 cut(s)	25, 371, 478
Sfr303I	CCGCGG	1 cut(s)	96
SgrBI	CCGCGG	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	1 cut(s)	448
SsiI	CCGC	4 cut(s)	93, 95, 155, 192
SspMI	CTAG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	249
TasI	AATT	1 cut(s)	448
TauI	GCSGC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	586
Tru9I	TTAA	1 cut(s)	586
TscAI	CASTG	2 cut(s)	112, 433
TseI	GCWGC	2 cut(s)	152, 543
TspRI	CASTG	2 cut(s)	112, 433
XagI	CCTNNNNNAGG	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.