AT1G19270

Protein DA1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
6662417 .. 6666032
3616 bp
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UTR
Exon/CDS
Intron
AT1G19270.1

Sequence Viewer

Length: 1599 bp
ATGGGTTGGTTTAACAAGATCTTTAAAGGCTCTAACCAAAGGCTCCGGGTTGGGAATAATAAGCACAATCACAATGTTTATTACGATAATTATCCGACTGCTTCACATGATGATGAGCCTAGTGCGGCGGATACAGATGCTGATAATGATGAACCTCATCATACTCAGGAACCATCTACATCTGAGGATAATACATCGAATGACCAGGAAAATGAAGACATAGACCGTGCAATTGCATTGTCGCTTTTAGAAGAGAATCAAGAACAGACAAGTATAAGCGGGAAATACTCGATGCCGGTGGATGAAGATGAGCAACTTGCTAGAGCCCTACAAGAAAGTATGGTAGTTGGGAATTCACCCCGTCACAAAAGTGGAAGTACATATGATAATGGGAATGCATATGGAGCTGGAGATTTATATGGGAATGGACATATGTATGGAGGAGGAAATGTATATGCAAATGGAGATATTTATTATCCAAGACCTATTACTTTTCAAATGGATTTCAGGATTTGTGCTGGCTGTAATATGGAGATTGGCCATGGAAGATTTCTGAATTGCCTTAATTCACTATGGCATCCAGAATGTTTTCGATGTTATGGCTGCAGTCAGCCGATTTCTGAGTACGAGTTTTCAACATCAGGGAACTACCCTTTTCACAAGGCTTGTTACAGGGAGAGATATCATCCTAAATGTGATGTCTGCAGCCACTTTATACCAACAAATCATGCTGGTCTTATTGAATATAGGGCACATCCTTTTTGGGTTCAGAAGTATTGTCCTTCTCACGAACACGATGCTACCCCGAGATGTTGCAGTTGTGAAAGAATGGAGCCACGGAATACGAGATATGTTGAACTTAACGATGGACGGAAACTTTGCCTTGAGTGTTTGGACTCGGCGGTCATGGACACCATGCAATGCCAACCTCTGTACTTGCAAATACAAAATTTCTATGAAGGACTCAACATGAAGGTAGAGCAGGAAGTTCCACTCCTCTTGGTTGAGAGACAAGCACTTAACGAAGCCAGAGAAGGTGAAAAGAATGGTCACTATCACATGCCAGAAACAAGAGGACTCTGCCTTTCAGAAGAACAAACTGTTAGTACTGTAAGAAAGCGATCAAAGCATGGCACAGGAAAATGGGCCGGGAATATTACAGAACCTTACAAGTTAACACGGCAATGTGAAGTTACCGCCATTCTCATCTTATTCGGGCTCCCTAGGTTACTTACTGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGATGAGGCTCAAAGGATTCCGAACACTGAGCCAAGATGTTGAAGAAGGTATATGTCAAGTGATGGCTCATAAATGGTTAGATGCTGAGTTAGCTGCTGGTTCAACAAATAGCAATGCTGCATCATCATCCTCCTCTTCTCAAGGACTGAAAAAGGGACCGAGATCTCAGTACGAGAGAAAGCTTGGTGAGTTTTTCAAGCACCAAATCGAGTCTGATGCTTCTCCGGTTTATGGAGACGGGTTCAGAGCTGGGAGGTTAGCTGTTCACAAGTACGGTTTGCGAAAAACACTTGAGCATATACAGATGACCGGTAGATTCCCGGTTTAA

Protein Analysis

532

Amino Acids

60.36

Weight (kDa)

5.98

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIM PF00412 172 - 226 7.9e-09 LIM domain
DA1-like PF12315 321 - 527 2.7e-96 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 902
AciI CCGC 5 cut(s) 125, 128, 279, 902, 1197
AcoI YGGCCR 1 cut(s) 538
AcsI RAATTY 2 cut(s) 352, 949
AfaI GTAC 6 cut(s) 379, 626, 935, 1108, 1442, 1544
AfiI CCNNNNNNNGG 1 cut(s) 1502
AgeI ACCGGT 1 cut(s) 1580
AgsI TTSAA 7 cut(s) 497, 636, 743, 857, 1313, 1374, 1468
AjnI CCWGG 1 cut(s) 204
AleI CACNNNNGTG 1 cut(s) 369
AluBI AGCT 6 cut(s) 407, 1250, 1364, 1453, 1520, 1532
AluI AGCT 6 cut(s) 407, 1250, 1364, 1453, 1520, 1532
Alw26I GTCTC 2 cut(s) 1003, 1500
AlwNI CAGNNNCTG 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 805
AoxI GGCC 2 cut(s) 538, 1146
ApeKI GCWGC 4 cut(s) 603, 705, 1364, 1388
ApoI RAATTY 2 cut(s) 352, 949
ArsI GACNNNNNNTTYG 2 cut(s) 861, 893
AsiGI ACCGGT 1 cut(s) 1580
Asp700I GAANNNNTTC 1 cut(s) 588
AspA2I CCTAGG 1 cut(s) 1223
AspS9I GGNCC 2 cut(s) 1146, 1427
AsuC2I CCSGG 3 cut(s) 47, 1150, 1592
AsuHPI GGTGA 3 cut(s) 348, 1049, 1469
AvaI CYCGRG 1 cut(s) 805
AvaII GGWCC 1 cut(s) 1427
AvrII CCTAGG 1 cut(s) 1223
BaeGI GKGCMC 1 cut(s) 754
BalI TGGCCA 1 cut(s) 540
BanII GRGCYC 2 cut(s) 328, 1221
BbsI GAAGAC 1 cut(s) 222
BbvI GCAGC 4 cut(s) 590, 717, 1351, 1375
BccI CCATC 3 cut(s) 181, 860, 1327
BceAI ACGGC 1 cut(s) 1196
BcgI CGANNNNNNTGC 4 cut(s) 779, 813, 1469, 1503
BciT130I CCWGG 1 cut(s) 206
BciVI GTATCC 1 cut(s) 124
BcnI CCSGG 3 cut(s) 47, 1150, 1592
BcoDI GTCTC 2 cut(s) 1003, 1500
BfaI CTAG 4 cut(s) 120, 321, 1224, 1247
BfmI CTRYAG 2 cut(s) 604, 703
BfuI GTATCC 1 cut(s) 124
BglII AGATCT 2 cut(s) 18, 1433
BisI GCNGC 5 cut(s) 126, 604, 706, 1365, 1389
BlnI CCTAGG 1 cut(s) 1223
BlsI GCNGC 5 cut(s) 127, 605, 707, 1366, 1390
BmcAI AGTACT 1 cut(s) 1108
Bme1390I CCNGG 4 cut(s) 47, 206, 1150, 1592
Bme18I GGWCC 1 cut(s) 1427
BmeT110I CYCGRG 1 cut(s) 805
BmgT120I GGNCC 2 cut(s) 1146, 1427
BmiI GGNNCC 5 cut(s) 44, 171, 834, 1220, 1428
BmrFI CCNGG 4 cut(s) 47, 206, 1150, 1592
BmsI GCATC 8 cut(s) 127, 282, 586, 787, 1251, 1342, 1400, 1477
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 429
BpuEI CTTGAG 3 cut(s) 905, 1395, 1583
BpuMI CCSGG 3 cut(s) 47, 1150, 1592
BsaBI GATNNNNATC 1 cut(s) 90
BsaJI CCNNGG 3 cut(s) 541, 836, 1223
BsaWI WCCGGW 2 cut(s) 1495, 1580
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 1 cut(s) 1502
Bse118I RCCGGY 2 cut(s) 295, 1580
Bse1I ACTGG 1 cut(s) 1240
Bse3DI GCAATG 3 cut(s) 926, 1190, 1390
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 3 cut(s) 541, 836, 1223
BseGI GGATG 6 cut(s) 307, 577, 685, 754, 1278, 1397
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 1502
BseMI GCAATG 3 cut(s) 926, 1190, 1390
BseMII CTCAG 6 cut(s) 174, 179, 612, 1289, 1347, 1451
BseNI ACTGG 1 cut(s) 1240
BseRI GAGGAG 3 cut(s) 456, 986, 1393
BseSI GKGCMC 1 cut(s) 754
BseXI GCAGC 4 cut(s) 590, 717, 1351, 1375
BseYI CCCAGC 1 cut(s) 1520
BshFI GGCC 2 cut(s) 540, 1148
BshTI ACCGGT 1 cut(s) 1580
BsiHKCI CYCGRG 1 cut(s) 805
BsiSI CCGG 6 cut(s) 46, 296, 1149, 1496, 1581, 1592
BslFI GGGAC 1 cut(s) 1440
BslI CCNNNNNNNGG 1 cut(s) 1502
BsmAI GTCTC 2 cut(s) 1003, 1500
BsmBI CGTCTC 1 cut(s) 1500
BsmFI GGGAC 1 cut(s) 1440
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 2 cut(s) 540, 1148
BsoBI CYCGRG 1 cut(s) 805
Bsp1286I GDGCHC 3 cut(s) 328, 754, 1221
Bsp143I GATC 3 cut(s) 18, 1121, 1433
Bsp19I CCATGG 1 cut(s) 541
BspACI CCGC 5 cut(s) 125, 128, 279, 902, 1197
BspANI GGCC 2 cut(s) 540, 1148
BspCNI CTCAG 6 cut(s) 175, 178, 613, 1290, 1348, 1450
BspHI TCATGA 1 cut(s) 1252
BspLI GGNNCC 5 cut(s) 44, 171, 834, 1220, 1428
BspMAI CTGCAG 2 cut(s) 608, 707
BsrDI GCAATG 3 cut(s) 926, 1190, 1390
BsrFI RCCGGY 2 cut(s) 295, 1580
BsrI ACTGG 1 cut(s) 1240
BssAI RCCGGY 2 cut(s) 295, 1580
BssECI CCNNGG 3 cut(s) 541, 836, 1223
BssMI GATC 3 cut(s) 18, 1121, 1433
BssT1I CCWWGG 2 cut(s) 541, 1223
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 4 cut(s) 227, 1102, 1111, 1547
Bst6I CTCTTC 2 cut(s) 246, 1411
BstC8I GCNNGC 2 cut(s) 520, 1266
BstDEI CTNAG 6 cut(s) 165, 183, 621, 1298, 1356, 1437
BstDSI CCRYGG 2 cut(s) 541, 836
BstF5I GGATG 6 cut(s) 307, 577, 685, 754, 1278, 1397
BstKTI GATC 3 cut(s) 21, 1124, 1436
BstMAI GTCTC 2 cut(s) 1003, 1500
BstMBI GATC 3 cut(s) 18, 1121, 1433
BstMWI GCNNNNNNNGC 3 cut(s) 404, 1126, 1361
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 2 cut(s) 1063, 1268
BstSCI CCNGG 4 cut(s) 45, 204, 1148, 1590
BstSFI CTRYAG 2 cut(s) 604, 703
BstSLI GKGCMC 1 cut(s) 754
BstV1I GCAGC 4 cut(s) 590, 717, 1351, 1375
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 2 cut(s) 18, 1433
BstYI RGATCY 2 cut(s) 18, 1433
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 2 cut(s) 540, 1148
BtgI CCRYGG 2 cut(s) 541, 836
BtsCI GGATG 6 cut(s) 307, 577, 685, 754, 1278, 1397
BtsIMutI CAGTG 1 cut(s) 1295
Cac8I GCNNGC 2 cut(s) 520, 1266
CaiI CAGNNNCTG 1 cut(s) 140
CciI TCATGA 1 cut(s) 1252
Cfr10I RCCGGY 2 cut(s) 295, 1580
Cfr13I GGNCC 2 cut(s) 1146, 1427
Csp6I GTAC 6 cut(s) 378, 625, 934, 1107, 1441, 1543
CspAI ACCGGT 1 cut(s) 1580
CspCI CAANNNNNGTGG 2 cut(s) 981, 1016
CviQI GTAC 6 cut(s) 378, 625, 934, 1107, 1441, 1543
DdeI CTNAG 6 cut(s) 165, 183, 621, 1298, 1356, 1437
DpnI GATC 3 cut(s) 20, 1123, 1435
DpnII GATC 3 cut(s) 18, 1121, 1433
DraI TTTAAA 1 cut(s) 25
DrdI GACNNNNNNGTC 1 cut(s) 902
DseDI GACNNNNNNGTC 1 cut(s) 902
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 2 cut(s) 246, 1411
EarI CTCTTC 2 cut(s) 246, 1411
EciI GGCGGA 1 cut(s) 143
Eco130I CCWWGG 2 cut(s) 541, 1223
Eco24I GRGCYC 2 cut(s) 328, 1221
Eco32I GATATC 1 cut(s) 683
Eco47I GGWCC 1 cut(s) 1427
Eco88I CYCGRG 1 cut(s) 805
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 683
EcoT14I CCWWGG 2 cut(s) 541, 1223
EcoT22I ATGCAT 2 cut(s) 400, 1266
EcoT38I GRGCYC 2 cut(s) 328, 1221
ErhI CCWWGG 2 cut(s) 541, 1223
Esp3I CGTCTC 1 cut(s) 1500
FaqI GGGAC 1 cut(s) 1440
FauI CCCGC 1 cut(s) 272
FauNDI CATATG 3 cut(s) 382, 400, 432
Fnu4HI GCNGC 5 cut(s) 126, 604, 706, 1365, 1389
FokI GGATG 6 cut(s) 314, 564, 672, 741, 1285, 1384
FriOI GRGCYC 2 cut(s) 328, 1221
Fsp4HI GCNGC 5 cut(s) 126, 604, 706, 1365, 1389
FspBI CTAG 4 cut(s) 120, 321, 1224, 1247
GluI GCNGC 5 cut(s) 126, 604, 706, 1365, 1389
GsaI CCCAGC 1 cut(s) 1524
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 2 cut(s) 540, 1148
HapII CCGG 6 cut(s) 46, 296, 1149, 1496, 1581, 1592
HincII GTYRAC 1 cut(s) 1176
HindII GTYRAC 1 cut(s) 1176
HindIII AAGCTT 1 cut(s) 1451
HinfI GANTC 8 cut(s) 256, 896, 963, 1077, 1243, 1287, 1481, 1587
HpaI GTTAAC 1 cut(s) 1176
HpaII CCGG 6 cut(s) 46, 296, 1149, 1496, 1581, 1592
HphI GGTGA 3 cut(s) 348, 1049, 1469
Hpy166II GTNNAC 2 cut(s) 1176, 1537
Hpy188I TCNGA 9 cut(s) 96, 184, 555, 622, 771, 1090, 1292, 1486, 1517
Hpy188III TCNNGA 6 cut(s) 167, 260, 508, 581, 788, 1253
Hpy8I GTNNAC 2 cut(s) 1176, 1537
HpyAV CCTTC 5 cut(s) 792, 953, 967, 1028, 1310
HpyCH4III ACNGT 4 cut(s) 227, 1102, 1111, 1547
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 1126, 1361
HpyF3I CTNAG 6 cut(s) 165, 183, 621, 1298, 1356, 1437
KspAI GTTAAC 1 cut(s) 1176
Kzo9I GATC 3 cut(s) 18, 1121, 1433
LmnI GCTCC 4 cut(s) 48, 404, 832, 1224
Lsp1109I GCAGC 4 cut(s) 590, 717, 1351, 1375
LweI GCATC 8 cut(s) 127, 282, 586, 787, 1251, 1342, 1400, 1477
MaeI CTAG 4 cut(s) 120, 321, 1224, 1247
MaeIII GTNAC 5 cut(s) 362, 668, 1049, 1192, 1227
MalI GATC 3 cut(s) 20, 1123, 1435
MboI GATC 3 cut(s) 18, 1121, 1433
MboII GAAGA 7 cut(s) 227, 263, 317, 558, 1103, 1325, 1398
MfeI CAATTG 1 cut(s) 231
MflI RGATCY 2 cut(s) 18, 1433
MhlI GDGCHC 3 cut(s) 328, 754, 1221
MlsI TGGCCA 1 cut(s) 540
MluCI AATT 6 cut(s) 88, 231, 352, 556, 565, 949
MluNI TGGCCA 1 cut(s) 540
MlyI GAGTC 4 cut(s) 890, 957, 1071, 1490
MmeI TCCRAC 1 cut(s) 119
Mox20I TGGCCA 1 cut(s) 540
Mph1103I ATGCAT 2 cut(s) 400, 1266
MroXI GAANNNNTTC 1 cut(s) 588
MscI TGGCCA 1 cut(s) 540
MseI TTAA 7 cut(s) 12, 24, 564, 861, 1020, 1175, 1597
MslI CAYNNNNRTG 4 cut(s) 111, 369, 435, 1183
Msp20I TGGCCA 1 cut(s) 540
MspI CCGG 6 cut(s) 46, 296, 1149, 1496, 1581, 1592
MspR9I CCNGG 4 cut(s) 47, 206, 1150, 1592
MunI CAATTG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 3 cut(s) 404, 1126, 1361
NciI CCSGG 3 cut(s) 47, 1150, 1592
NcoI CCATGG 1 cut(s) 541
NdeI CATATG 3 cut(s) 382, 400, 432
NdeII GATC 3 cut(s) 18, 1121, 1433
NlaIV GGNNCC 5 cut(s) 44, 171, 834, 1220, 1428
NmeAIII GCCGAG 1 cut(s) 878
NmuCI GTSAC 2 cut(s) 362, 1049
NsiI ATGCAT 2 cut(s) 400, 1266
NspI RCATGY 2 cut(s) 1063, 1268
OliI CACNNNNGTG 1 cut(s) 369
PaeI GCATGC 1 cut(s) 1268
PagI TCATGA 1 cut(s) 1252
PctI GAATGC 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 4 cut(s) 256, 1243, 1287, 1587
PinAI ACCGGT 1 cut(s) 1580
PkrI GCNGC 5 cut(s) 127, 605, 707, 1366, 1390
PleI GAGTC 4 cut(s) 890, 957, 1071, 1489
PpsI GAGTC 4 cut(s) 890, 957, 1071, 1489
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 1520
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 5 cut(s) 44, 171, 834, 1220, 1428
PspPI GGNCC 2 cut(s) 1146, 1427
PstI CTGCAG 2 cut(s) 608, 707
PstNI CAGNNNCTG 1 cut(s) 140
PsuI RGATCY 2 cut(s) 18, 1433
RsaI GTAC 6 cut(s) 379, 626, 935, 1108, 1442, 1544
RsaNI GTAC 6 cut(s) 378, 625, 934, 1107, 1441, 1543
RseI CAYNNNNRTG 4 cut(s) 111, 369, 435, 1183
SaqAI TTAA 7 cut(s) 12, 24, 564, 861, 1020, 1175, 1597
SatI GCNGC 5 cut(s) 126, 604, 706, 1365, 1389
Sau3AI GATC 3 cut(s) 18, 1121, 1433
Sau96I GGNCC 2 cut(s) 1146, 1427
ScaI AGTACT 1 cut(s) 1108
SchI GAGTC 4 cut(s) 890, 957, 1071, 1490
ScrFI CCNGG 4 cut(s) 47, 206, 1150, 1592
SduI GDGCHC 3 cut(s) 328, 754, 1221
SfaNI GCATC 8 cut(s) 127, 282, 586, 787, 1251, 1342, 1400, 1477
SfcI CTRYAG 2 cut(s) 604, 703
SinI GGWCC 1 cut(s) 1427
SmiMI CAYNNNNRTG 4 cut(s) 111, 369, 435, 1183
SmlI CTYRAG 3 cut(s) 884, 1410, 1562
SmoI CTYRAG 3 cut(s) 884, 1410, 1562
SphI GCATGC 1 cut(s) 1268
Sse9I AATT 6 cut(s) 88, 231, 352, 556, 565, 949
SsiI CCGC 5 cut(s) 125, 128, 279, 902, 1197
SspI AATATT 1 cut(s) 1156
SspMI CTAG 4 cut(s) 120, 321, 1224, 1247
StyD4I CCNGG 4 cut(s) 45, 204, 1148, 1590
StyI CCWWGG 2 cut(s) 541, 1223
TaaI ACNGT 4 cut(s) 227, 1102, 1111, 1547
TaqI TCGA 5 cut(s) 197, 290, 592, 1241, 1479
TaqII GACCGA 1 cut(s) 1444
TasI AATT 6 cut(s) 88, 231, 352, 556, 565, 949
TatI WGTACW 3 cut(s) 377, 933, 1106
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 4 cut(s) 256, 1243, 1287, 1587
Tru1I TTAA 7 cut(s) 12, 24, 564, 861, 1020, 1175, 1597
Tru9I TTAA 7 cut(s) 12, 24, 564, 861, 1020, 1175, 1597
TscAI CASTG 1 cut(s) 1302
TseFI GTSAC 2 cut(s) 362, 1049
TseI GCWGC 4 cut(s) 603, 705, 1364, 1388
Tsp45I GTSAC 2 cut(s) 362, 1049
TspDTI ATGAA 5 cut(s) 165, 228, 318, 972, 986
TspGWI ACGGA 2 cut(s) 853, 886
TspRI CASTG 1 cut(s) 1302
VpaK11BI GGWCC 1 cut(s) 1427
XapI RAATTY 2 cut(s) 352, 949
XceI RCATGY 2 cut(s) 1063, 1268
XmaJI CCTAGG 1 cut(s) 1223
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 4 cut(s) 120, 321, 1224, 1247
ZrmI AGTACT 1 cut(s) 1108
Zsp2I ATGCAT 2 cut(s) 400, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.