RchiOBHm_Chr6g0300341

Protein DA1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
61224030 .. 61229226
5197 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26972

Sequence Viewer

Length: 1623 bp
ATGGGTTGGCTTAGCAAGATTTTCAAAGGCTCCAGCCACAAAATATCAGAAGAGCATTGTCATGAGAACGATGGAGGGGATCCAAATACCGATGGTCCTTCTTGTTCAGGGGACATCTGGCCAGAAAATGAGAATGAAGATATAGACCGTGCTATTGCATTATCTCTTTTAGAAGAAAATCAGAAAGGAAAAAATGTGATTGATTTTGATTCTCAGTTGGAAGAAGATGAACAACTTGCCAGAGCCTTACAAGAAAGTTTGAATGTGGACTCTCCTCCCCGATATGGAAATGGAAATACACATCCTCCTCAATATGGAGGAAATCCACATCCTCCTCAATATGGAAATGGAAATACATATCCTCCTGAATATGGGAATGGAAATACACATCCTCCCCGATATGGAAATGGAAATGGAAATGGAAATACACTTCCTCCTCGATATGAAAACGGAAATGCATATCCTCCTCGATATGGAAATGGACATACTTATCCACCTATCCCCATGTACTATCCAATGGGGTCCAGGATTTGTGCCGGTTGCAATGCTGAGATTGGTTTTGGACGATATTTGAATTGCCTGAATGCATTTTGGCATCCAGAATGCTTCCGGTGCCGTGCATGCAATGTACCGATTTCCGATTACGAGTTTTCTACATCTGGGAATTACCCTTACCACAAATCTTGCTATAAGGAGAGCTACCATCCAAAATGTGATGTTTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTTTGGGTTCAAAAATATTGCCCATCTCATGAACATGATAATACTCCTCGGTGTTGCAGCTGTGAGCGAATGGAGGCACGGGACACAGCATATATAAATCTAAATGATGGTCGGAAGCTCTGTCTAGAGTGTTTGGACTCTGCAATCATGGATACCAGCGAATGCCAACCCCTATATCTTGATATACAGGAATTTTATGAAGGTTTGAATATGAAAGTGGAGCAGCAAGTTCCATTACTCTTGGTTGAAAGGGAAGCACTAAATGAAGCGAGAGAAGGAGAAAGAAATGGCCATTATCACATGCCTGAGACCAGAGGGCTCTGCCTTTCTGAGGAACAGACTATTAGCACAATTTCAAGGCGGCCAAAGTTTGGGGCAGGAAACCGAGCTACGGACATGATAACAGAGCCCTACAAACTAACTCGTCTCTGTGAGGTGACAGCAATTCTAATATTGTATGGTCTTCCAAGGTTGCTGACTGGGTCTATCCTAGCACATGAAATGATGCATGCATGGCTGCGGCTTAAAGGTTATCGACTCAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTATAGCTCACATGTGGCTAGATGCTGAGCTTATGTCTGGCTCAGAAGGGAATTCTGCATCTACATCATCATCGTCCTCCAGTTCCAATTCATCAAAGAAGGGTACACGATCTCAGTTTGAGAAGAAGATTGGTGAGTTCTTTAAGCACCAGATCGAAGTAGATATTTCCCCAGTATATGGAGACGGATATAGGGCTGGTCAACAGGCAGTGAATAAATACGGGCTTAGAAGGACCCTAGACCATATTCAAATGACAGGGACCTTTCCTTATTGA

Protein Analysis

540

Amino Acids

60.86

Weight (kDa)

5.62

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIM PF00412 178 - 232 4.4e-09 LIM domain
DA1-like PF12315 327 - 535 1.1e-99 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 612
AccB7I CCANNNNNTGG 2 cut(s) 1148, 1526
AciI CCGC 2 cut(s) 1138, 1297
AclWI GGATC 2 cut(s) 74, 87
AcoI YGGCCR 3 cut(s) 119, 1066, 1139
AcsI RAATTY 2 cut(s) 968, 1399
AfaI GTAC 3 cut(s) 509, 630, 1453
AflIII ACRYGT 1 cut(s) 1359
AjnI CCWGG 1 cut(s) 524
AluBI AGCT 6 cut(s) 699, 837, 895, 1166, 1355, 1378
AluI AGCT 6 cut(s) 699, 837, 895, 1166, 1355, 1378
Alw26I GTCTC 3 cut(s) 1079, 1208, 1524
AlwI GGATC 2 cut(s) 74, 87
AoxI GGCC 3 cut(s) 119, 1066, 1139
ApeKI GCWGC 3 cut(s) 834, 1000, 1294
ApoI RAATTY 2 cut(s) 968, 1399
AspS9I GGNCC 4 cut(s) 95, 522, 1581, 1608
AsuHPI GGTGA 2 cut(s) 1225, 1493
AvaII GGWCC 4 cut(s) 95, 522, 1581, 1608
BaeGI GKGCMC 1 cut(s) 772
BalI TGGCCA 2 cut(s) 121, 1068
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 612
BanII GRGCYC 2 cut(s) 1098, 1188
BbsI GAAGAC 1 cut(s) 1232
BbvI GCAGC 3 cut(s) 846, 1012, 1281
BccI CCATC 5 cut(s) 65, 86, 711, 808, 878
BceAI ACGGC 1 cut(s) 600
BciT130I CCWGG 1 cut(s) 526
BciVI GTATCC 1 cut(s) 922
BcoDI GTCTC 3 cut(s) 1079, 1208, 1524
BfaI CTAG 4 cut(s) 902, 1268, 1367, 1586
BfuI GTATCC 1 cut(s) 922
BisI GCNGC 5 cut(s) 835, 1001, 1139, 1295, 1298
BlpI GCTNAGC 2 cut(s) 11, 1374
BlsI GCNGC 5 cut(s) 836, 1002, 1140, 1296, 1299
Bme1390I CCNGG 1 cut(s) 526
Bme18I GGWCC 4 cut(s) 95, 522, 1581, 1608
BmgT120I GGNCC 4 cut(s) 95, 522, 1581, 1608
BmiI GGNNCC 6 cut(s) 31, 81, 523, 614, 1583, 1609
BmrFI CCNGG 1 cut(s) 526
BmrI ACTGGG 2 cut(s) 1266, 1514
BmsI GCATC 4 cut(s) 604, 1272, 1360, 1415
BmuI ACTGGG 2 cut(s) 1266, 1514
BpiI GAAGAC 1 cut(s) 1232
BpmI CTGGAG 2 cut(s) 16, 1411
Bpu1102I GCTNAGC 2 cut(s) 11, 1374
BsaI GGTCTC 1 cut(s) 1079
BsaJI CCNNGG 2 cut(s) 824, 1244
BsaWI WCCGGW 1 cut(s) 609
BsaXI ACNNNNNCTCC 8 cut(s) 289, 319, 346, 376, 376, 406, 418, 448
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 3 cut(s) 1261, 1428, 1520
Bse3DI GCAATG 2 cut(s) 550, 631
BseBI CCWGG 1 cut(s) 526
BseDI CCNNGG 2 cut(s) 824, 1244
BseGI GGATG 6 cut(s) 301, 328, 388, 595, 703, 772
BseMI GCAATG 2 cut(s) 550, 631
BseMII CTCAG 8 cut(s) 227, 540, 1074, 1098, 1330, 1365, 1404, 1475
BseNI ACTGG 3 cut(s) 1261, 1428, 1520
BseRI GAGGAG 6 cut(s) 264, 297, 324, 426, 456, 813
BseSI GKGCMC 1 cut(s) 772
BseXI GCAGC 3 cut(s) 846, 1012, 1281
BshFI GGCC 3 cut(s) 121, 1068, 1141
BshNI GGYRCC 1 cut(s) 612
BsiSI CCGG 2 cut(s) 537, 610
BslFI GGGAC 2 cut(s) 125, 872
BsmAI GTCTC 3 cut(s) 1079, 1208, 1524
BsmBI CGTCTC 2 cut(s) 1208, 1524
BsmFI GGGAC 2 cut(s) 125, 872
BsmI GAATGC 3 cut(s) 589, 608, 944
BsnI GGCC 3 cut(s) 121, 1068, 1141
Bso31I GGTCTC 1 cut(s) 1079
Bsp1286I GDGCHC 3 cut(s) 772, 1098, 1188
Bsp143I GATC 3 cut(s) 79, 1457, 1500
Bsp1720I GCTNAGC 2 cut(s) 11, 1374
BspACI CCGC 2 cut(s) 1138, 1297
BspANI GGCC 3 cut(s) 121, 1068, 1141
BspCNI CTCAG 8 cut(s) 226, 541, 1075, 1099, 1329, 1366, 1403, 1474
BspHI TCATGA 2 cut(s) 61, 805
BspLI GGNNCC 6 cut(s) 31, 81, 523, 614, 1583, 1609
BspPI GGATC 2 cut(s) 74, 87
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 612
BspTNI GGTCTC 1 cut(s) 1079
BsrDI GCAATG 2 cut(s) 550, 631
BsrFI RCCGGY 1 cut(s) 536
BsrI ACTGG 3 cut(s) 1261, 1428, 1520
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 2 cut(s) 824, 1244
BssMI GATC 3 cut(s) 79, 1457, 1500
BssT1I CCWWGG 1 cut(s) 1244
Bst2UI CCWGG 1 cut(s) 526
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 3 cut(s) 622, 725, 1287
BstENI CCTNNNNNAGG 1 cut(s) 1106
BstF5I GGATG 6 cut(s) 301, 328, 388, 595, 703, 772
BstKTI GATC 3 cut(s) 82, 1460, 1503
BstMAI GTCTC 3 cut(s) 1079, 1208, 1524
BstMBI GATC 3 cut(s) 79, 1457, 1500
BstMWI GCNNNNNNNGC 3 cut(s) 612, 621, 1291
BstNI CCWGG 1 cut(s) 526
BstNSI RCATGY 4 cut(s) 624, 1081, 1289, 1363
BstSCI CCNGG 1 cut(s) 524
BstSLI GKGCMC 1 cut(s) 772
BstV1I GCAGC 3 cut(s) 846, 1012, 1281
BstV2I GAAGAC 1 cut(s) 1232
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuI GTATCC 1 cut(s) 922
BsuRI GGCC 3 cut(s) 121, 1068, 1141
BtsCI GGATG 6 cut(s) 301, 328, 388, 595, 703, 772
BtsI GCAGTG 1 cut(s) 1563
BtsIMutI CAGTG 1 cut(s) 1563
Cac8I GCNNGC 3 cut(s) 622, 725, 1287
CciI TCATGA 2 cut(s) 61, 805
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 4 cut(s) 95, 522, 1581, 1608
Csp6I GTAC 3 cut(s) 508, 629, 1452
CspCI CAANNNNNGTGG 2 cut(s) 665, 700
CviQI GTAC 3 cut(s) 508, 629, 1452
DpnI GATC 3 cut(s) 81, 1459, 1502
DpnII GATC 3 cut(s) 79, 1457, 1500
EaeI YGGCCR 3 cut(s) 119, 1066, 1139
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 1244
Eco24I GRGCYC 2 cut(s) 1098, 1188
Eco31I GGTCTC 1 cut(s) 1079
Eco47I GGWCC 4 cut(s) 95, 522, 1581, 1608
EcoNI CCTNNNNNAGG 1 cut(s) 1106
EcoO109I RGGNCCY 2 cut(s) 1581, 1608
EcoRI GAATTC 1 cut(s) 1399
EcoRII CCWGG 1 cut(s) 524
EcoT14I CCWWGG 1 cut(s) 1244
EcoT22I ATGCAT 4 cut(s) 460, 589, 1287, 1291
EcoT38I GRGCYC 2 cut(s) 1098, 1188
ErhI CCWWGG 1 cut(s) 1244
Esp3I CGTCTC 2 cut(s) 1208, 1524
FaqI GGGAC 2 cut(s) 125, 872
Fnu4HI GCNGC 5 cut(s) 835, 1001, 1139, 1295, 1298
FokI GGATG 6 cut(s) 288, 315, 375, 582, 690, 759
FriOI GRGCYC 2 cut(s) 1098, 1188
Fsp4HI GCNGC 5 cut(s) 835, 1001, 1139, 1295, 1298
FspBI CTAG 4 cut(s) 902, 1268, 1367, 1586
GluI GCNGC 5 cut(s) 835, 1001, 1139, 1295, 1298
GsuI CTGGAG 2 cut(s) 16, 1411
HaeIII GGCC 3 cut(s) 121, 1068, 1141
HapII CCGG 2 cut(s) 537, 610
HincII GTYRAC 1 cut(s) 1550
HindII GTYRAC 1 cut(s) 1550
HinfI GANTC 4 cut(s) 209, 269, 914, 1314
HpaII CCGG 2 cut(s) 537, 610
HphI GGTGA 2 cut(s) 1225, 1493
Hpy166II GTNNAC 3 cut(s) 268, 1454, 1550
Hpy188I TCNGA 6 cut(s) 49, 183, 640, 891, 1108, 1393
Hpy188III TCNNGA 7 cut(s) 62, 365, 599, 806, 902, 956, 1322
Hpy8I GTNNAC 3 cut(s) 268, 1454, 1550
HpyAV CCTTC 7 cut(s) 108, 971, 1046, 1328, 1388, 1441, 1572
HpyCH4III ACNGT 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 3 cut(s) 612, 621, 1291
Kzo9I GATC 3 cut(s) 79, 1457, 1500
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 35, 997
Lsp1109I GCAGC 3 cut(s) 846, 1012, 1281
LweI GCATC 4 cut(s) 604, 1272, 1360, 1415
MaeI CTAG 4 cut(s) 902, 1268, 1367, 1586
MaeIII GTNAC 1 cut(s) 1213
MalI GATC 3 cut(s) 81, 1459, 1502
MboI GATC 3 cut(s) 79, 1457, 1500
MboII GAAGA 9 cut(s) 62, 149, 185, 233, 236, 1232, 1343, 1483, 1486
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 3 cut(s) 772, 1098, 1188
MlsI TGGCCA 2 cut(s) 121, 1068
MluCI AATT 7 cut(s) 574, 664, 968, 1128, 1221, 1399, 1435
MluNI TGGCCA 2 cut(s) 121, 1068
MlyI GAGTC 3 cut(s) 263, 908, 1308
MmeI TCCRAC 3 cut(s) 198, 761, 869
Mox20I TGGCCA 2 cut(s) 121, 1068
Mph1103I ATGCAT 4 cut(s) 460, 589, 1287, 1291
MscI TGGCCA 2 cut(s) 121, 1068
MseI TTAA 2 cut(s) 1302, 1491
MslI CAYNNNNRTG 2 cut(s) 60, 810
Msp20I TGGCCA 2 cut(s) 121, 1068
MspA1I CMGCKG 1 cut(s) 837
MspI CCGG 2 cut(s) 537, 610
MspR9I CCNGG 1 cut(s) 526
Mva1269I GAATGC 3 cut(s) 589, 608, 944
MvaI CCWGG 1 cut(s) 526
MwoI GCNNNNNNNGC 3 cut(s) 612, 621, 1291
NdeII GATC 3 cut(s) 79, 1457, 1500
NlaIV GGNNCC 6 cut(s) 31, 81, 523, 614, 1583, 1609
NmuCI GTSAC 1 cut(s) 1213
NsiI ATGCAT 4 cut(s) 460, 589, 1287, 1291
NspI RCATGY 4 cut(s) 624, 1081, 1289, 1363
PaeI GCATGC 2 cut(s) 624, 1289
PagI TCATGA 2 cut(s) 61, 805
PciI ACATGT 1 cut(s) 1359
PciSI GCTCTTC 1 cut(s) 45
PctI GAATGC 3 cut(s) 589, 608, 944
PfeI GAWTC 1 cut(s) 209
PflFI GACNNNGTC 2 cut(s) 1258, 1317
PflMI CCANNNNNTGG 2 cut(s) 1148, 1526
PfoI TCCNGGA 1 cut(s) 524
PkrI GCNGC 5 cut(s) 836, 1002, 1140, 1296, 1299
PleI GAGTC 3 cut(s) 263, 908, 1308
PpsI GAGTC 3 cut(s) 263, 908, 1308
PpuMI RGGWCCY 2 cut(s) 1581, 1608
PscI ACATGT 1 cut(s) 1359
Psp5II RGGWCCY 2 cut(s) 1581, 1608
Psp6I CCWGG 1 cut(s) 524
PspGI CCWGG 1 cut(s) 524
PspN4I GGNNCC 6 cut(s) 31, 81, 523, 614, 1583, 1609
PspPI GGNCC 4 cut(s) 95, 522, 1581, 1608
PspPPI RGGWCCY 2 cut(s) 1581, 1608
PsuI RGATCY 1 cut(s) 79
PsyI GACNNNGTC 2 cut(s) 1258, 1317
PvuII CAGCTG 1 cut(s) 837
RsaI GTAC 3 cut(s) 509, 630, 1453
RsaNI GTAC 3 cut(s) 508, 629, 1452
RseI CAYNNNNRTG 2 cut(s) 60, 810
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 1302, 1491
SatI GCNGC 5 cut(s) 835, 1001, 1139, 1295, 1298
Sau3AI GATC 3 cut(s) 79, 1457, 1500
Sau96I GGNCC 4 cut(s) 95, 522, 1581, 1608
SchI GAGTC 3 cut(s) 263, 908, 1308
ScrFI CCNGG 1 cut(s) 526
SduI GDGCHC 3 cut(s) 772, 1098, 1188
SfaNI GCATC 4 cut(s) 604, 1272, 1360, 1415
SinI GGWCC 4 cut(s) 95, 522, 1581, 1608
SmiMI CAYNNNNRTG 2 cut(s) 60, 810
SphI GCATGC 2 cut(s) 624, 1289
Sse9I AATT 7 cut(s) 574, 664, 968, 1128, 1221, 1399, 1435
SsiI CCGC 2 cut(s) 1138, 1297
SspI AATATT 2 cut(s) 794, 1230
SspMI CTAG 4 cut(s) 902, 1268, 1367, 1586
StyD4I CCNGG 1 cut(s) 524
StyI CCWWGG 1 cut(s) 1244
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 4 cut(s) 439, 469, 1312, 1503
TasI AATT 7 cut(s) 574, 664, 968, 1128, 1221, 1399, 1435
TatI WGTACW 1 cut(s) 507
TauI GCSGC 2 cut(s) 1141, 1300
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 2 cut(s) 1302, 1491
Tru9I TTAA 2 cut(s) 1302, 1491
TscAI CASTG 1 cut(s) 1563
TseFI GTSAC 1 cut(s) 1213
TseI GCWGC 3 cut(s) 834, 1000, 1294
Tsp45I GTSAC 1 cut(s) 1213
TspDTI ATGAA 9 cut(s) 150, 243, 459, 822, 990, 1004, 1056, 1290, 1428
TspGWI ACGGA 3 cut(s) 465, 1184, 1548
TspRI CASTG 1 cut(s) 1563
Tth111I GACNNNGTC 2 cut(s) 1258, 1317
Van91I CCANNNNNTGG 2 cut(s) 1148, 1526
VpaK11BI GGWCC 4 cut(s) 95, 522, 1581, 1608
XagI CCTNNNNNAGG 1 cut(s) 1106
XapI RAATTY 2 cut(s) 968, 1399
XbaI TCTAGA 1 cut(s) 901
XceI RCATGY 4 cut(s) 624, 1081, 1289, 1363
XspI CTAG 4 cut(s) 902, 1268, 1367, 1586
Zsp2I ATGCAT 4 cut(s) 460, 589, 1287, 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.