Rw6G035670

Protein DA1

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
60273853 .. 60279176
5324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G035670.1

Sequence Viewer

Length: 1629 bp
ATGGGTTGGCTTAGCAAGATTTTCAAAGGCTCCAGCCACAAAATATCAGAAGAGCATTGTCATGAGAACGATGGAGGGGATCCAAATACCGATGGTCCTTCTTGTTCAGGGGACATCTGGCCAGAAAATGAGAATGAAGATATAGACCGTGCTATTGCATTATCTCTTTTAGAAGAAAATCAGAAAGGAAAAAATGTGATTGATTTTGATTCTCAGTTGGAAGAAGATGAACAACTTGCCAGAGCCTTACAAGAAAGTTTGAATGCGGACTCTCCTCCCCGATATGGAAATGGAAATACACATCCTCCTCAATATGGAGGAAATCCACATCCTCCTCAATATGGAAATGGAAATACATATCCTCCTCAATATGGGAATGGAAATACACATCCTCCCCGATATGGAAGTGGAAATGGAAATGGAAATGGAAATACACTTCCTCCTCGATATGAAAACGGAAATGCATATCCTCCTCGATATGGAAATGGACATACATATCCACCTATCCCCATGTACTATCCAATGGGGTCCAGGATTTGTGCCGGTTGCAATGCTGAGATTGGTTTTGGACGATATTTGAATTGCCTGAATGCATTTTGGCATCCAGAATGCTTCCGGTGCCGTGCATGCAATGTACCGATTTCCGATTACGAGTTTTCTACATCTGGGAATTACCCTTACCACAAATCTTGCTATAAGGAGAGCTACCATCCAAAATGTGATGTTTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTTTGGGTTCAAAAATATTGCCCATCTCATGAACATGATAATACTCCTCGGTGTTGCAGCTGTGAGCGAATGGAGGCACGGGACACAGCATATATAAATCTAAATGATGGTCGGAAGCTCTGTCTAGAGTGTTTGGACTCTGCAATCATGGATACCAGCGAATGCCAACCCCTATATCTTGATATACAGGAATTTTATGAAGGTTTGAATATGAAAGTGGAGCAGCAAGTTCCATTACTCTTGGTTGAAAGGGAAGCACTAAATGAAGCGAGAGAAGGAGAAAGAAATGGCCATTATCACATGCCTGAGACCAGAGGGCTCTGCCTTTCTGAGGAACAGACTATTAGCACAATTTCAAGGCGGCCAAAGTTTGGGGCAGGAAACCGAGCCACGGACATGATAACAGAGCCCTACAAACTAACTCGCCTCTGTGAGGTGACAGCAATTCTAATATTGTATGGTCTTCCAAGGTTGCTGACTGGGTCTATCCTAGCACATGAAATGATGCATGCATGGCTGCGGCTTAAAGGTTATCGACTCAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTATAGCTCACATGTGGCTAGATGCTGAGCTTATGTCTGGCTCAGAAGGGAATTCTGCATCTACATCATCATCGTCCTCCAGTTCCAATTCATCAAAGAAGGGTACACGATCTCAGTTTGAGAAGAAGATTGGTGAGTTCTTTAAGCACCAGATCGAAGTAGATATTTCCCCAGTATATGGAGACGGATATAGGGCTGGTCAACAGGCAGTGAATAAATACGGGCTTAGAAGGACCCTAGACCATATTCAAATGACAGGGACCTTTCCTTATTGA

Protein Analysis

542

Amino Acids

60.98

Weight (kDa)

5.68

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIM PF00412 180 - 234 4.5e-09 LIM domain
DA1-like PF12315 329 - 537 1.1e-99 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 618
AccB7I CCANNNNNTGG 2 cut(s) 1154, 1532
AciI CCGC 3 cut(s) 266, 1144, 1303
AclWI GGATC 2 cut(s) 74, 87
AcoI YGGCCR 3 cut(s) 119, 1072, 1145
AcsI RAATTY 2 cut(s) 974, 1405
AfaI GTAC 3 cut(s) 515, 636, 1459
AflIII ACRYGT 1 cut(s) 1365
AjnI CCWGG 1 cut(s) 530
AluBI AGCT 5 cut(s) 705, 843, 901, 1361, 1384
AluI AGCT 5 cut(s) 705, 843, 901, 1361, 1384
Alw26I GTCTC 2 cut(s) 1085, 1530
AlwI GGATC 2 cut(s) 74, 87
AoxI GGCC 3 cut(s) 119, 1072, 1145
ApeKI GCWGC 3 cut(s) 840, 1006, 1300
ApoI RAATTY 2 cut(s) 974, 1405
AspS9I GGNCC 4 cut(s) 95, 528, 1587, 1614
AsuHPI GGTGA 2 cut(s) 1231, 1499
AvaII GGWCC 4 cut(s) 95, 528, 1587, 1614
BaeGI GKGCMC 1 cut(s) 778
BalI TGGCCA 2 cut(s) 121, 1074
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 618
BanII GRGCYC 2 cut(s) 1104, 1194
BbsI GAAGAC 1 cut(s) 1238
BbvI GCAGC 3 cut(s) 852, 1018, 1287
BccI CCATC 5 cut(s) 65, 86, 717, 814, 884
BceAI ACGGC 1 cut(s) 606
BciT130I CCWGG 1 cut(s) 532
BciVI GTATCC 1 cut(s) 928
BcoDI GTCTC 2 cut(s) 1085, 1530
BfaI CTAG 4 cut(s) 908, 1274, 1373, 1592
BfuI GTATCC 1 cut(s) 928
BisI GCNGC 5 cut(s) 841, 1007, 1145, 1301, 1304
BlpI GCTNAGC 2 cut(s) 11, 1380
BlsI GCNGC 5 cut(s) 842, 1008, 1146, 1302, 1305
Bme1390I CCNGG 1 cut(s) 532
Bme18I GGWCC 4 cut(s) 95, 528, 1587, 1614
BmgT120I GGNCC 4 cut(s) 95, 528, 1587, 1614
BmiI GGNNCC 6 cut(s) 31, 81, 529, 620, 1589, 1615
BmrFI CCNGG 1 cut(s) 532
BmrI ACTGGG 2 cut(s) 1272, 1520
BmsI GCATC 4 cut(s) 610, 1278, 1366, 1421
BmuI ACTGGG 2 cut(s) 1272, 1520
BpiI GAAGAC 1 cut(s) 1238
BpmI CTGGAG 2 cut(s) 16, 1417
Bpu1102I GCTNAGC 2 cut(s) 11, 1380
BsaI GGTCTC 1 cut(s) 1085
BsaJI CCNNGG 3 cut(s) 830, 1173, 1250
BsaWI WCCGGW 1 cut(s) 615
BsaXI ACNNNNNCTCC 8 cut(s) 289, 319, 346, 376, 376, 406, 424, 454
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 3 cut(s) 1267, 1434, 1526
Bse3DI GCAATG 2 cut(s) 556, 637
BseBI CCWGG 1 cut(s) 532
BseDI CCNNGG 3 cut(s) 830, 1173, 1250
BseGI GGATG 6 cut(s) 301, 328, 388, 601, 709, 778
BseMI GCAATG 2 cut(s) 556, 637
BseMII CTCAG 8 cut(s) 227, 546, 1080, 1104, 1336, 1371, 1410, 1481
BseNI ACTGG 3 cut(s) 1267, 1434, 1526
BseRI GAGGAG 7 cut(s) 264, 297, 324, 354, 432, 462, 819
BseSI GKGCMC 1 cut(s) 778
BseXI GCAGC 3 cut(s) 852, 1018, 1287
BshFI GGCC 3 cut(s) 121, 1074, 1147
BshNI GGYRCC 1 cut(s) 618
BsiSI CCGG 2 cut(s) 543, 616
BslFI GGGAC 2 cut(s) 125, 878
BsmAI GTCTC 2 cut(s) 1085, 1530
BsmBI CGTCTC 1 cut(s) 1530
BsmFI GGGAC 2 cut(s) 125, 878
BsmI GAATGC 4 cut(s) 268, 595, 614, 950
BsnI GGCC 3 cut(s) 121, 1074, 1147
Bso31I GGTCTC 1 cut(s) 1085
Bsp1286I GDGCHC 3 cut(s) 778, 1104, 1194
Bsp143I GATC 3 cut(s) 79, 1463, 1506
Bsp1720I GCTNAGC 2 cut(s) 11, 1380
BspACI CCGC 3 cut(s) 266, 1144, 1303
BspANI GGCC 3 cut(s) 121, 1074, 1147
BspCNI CTCAG 8 cut(s) 226, 547, 1081, 1105, 1335, 1372, 1409, 1480
BspHI TCATGA 2 cut(s) 61, 811
BspLI GGNNCC 6 cut(s) 31, 81, 529, 620, 1589, 1615
BspPI GGATC 2 cut(s) 74, 87
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 618
BspTNI GGTCTC 1 cut(s) 1085
BsrDI GCAATG 2 cut(s) 556, 637
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 3 cut(s) 1267, 1434, 1526
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 3 cut(s) 830, 1173, 1250
BssMI GATC 3 cut(s) 79, 1463, 1506
BssT1I CCWWGG 1 cut(s) 1250
Bst2UI CCWGG 1 cut(s) 532
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 3 cut(s) 628, 731, 1293
BstDSI CCRYGG 1 cut(s) 1173
BstENI CCTNNNNNAGG 2 cut(s) 1112, 1214
BstF5I GGATG 6 cut(s) 301, 328, 388, 601, 709, 778
BstKTI GATC 3 cut(s) 82, 1466, 1509
BstMAI GTCTC 2 cut(s) 1085, 1530
BstMBI GATC 3 cut(s) 79, 1463, 1506
BstMWI GCNNNNNNNGC 3 cut(s) 618, 627, 1297
BstNI CCWGG 1 cut(s) 532
BstNSI RCATGY 4 cut(s) 630, 1087, 1295, 1369
BstSCI CCNGG 1 cut(s) 530
BstSLI GKGCMC 1 cut(s) 778
BstV1I GCAGC 3 cut(s) 852, 1018, 1287
BstV2I GAAGAC 1 cut(s) 1238
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuI GTATCC 1 cut(s) 928
BsuRI GGCC 3 cut(s) 121, 1074, 1147
BtgI CCRYGG 1 cut(s) 1173
BtsCI GGATG 6 cut(s) 301, 328, 388, 601, 709, 778
BtsI GCAGTG 1 cut(s) 1569
BtsIMutI CAGTG 1 cut(s) 1569
Cac8I GCNNGC 3 cut(s) 628, 731, 1293
CciI TCATGA 2 cut(s) 61, 811
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 4 cut(s) 95, 528, 1587, 1614
Csp6I GTAC 3 cut(s) 514, 635, 1458
CspCI CAANNNNNGTGG 2 cut(s) 671, 706
CviQI GTAC 3 cut(s) 514, 635, 1458
DpnI GATC 3 cut(s) 81, 1465, 1508
DpnII GATC 3 cut(s) 79, 1463, 1506
EaeI YGGCCR 3 cut(s) 119, 1072, 1145
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 1250
Eco24I GRGCYC 2 cut(s) 1104, 1194
Eco31I GGTCTC 1 cut(s) 1085
Eco47I GGWCC 4 cut(s) 95, 528, 1587, 1614
EcoNI CCTNNNNNAGG 2 cut(s) 1112, 1214
EcoO109I RGGNCCY 2 cut(s) 1587, 1614
EcoRI GAATTC 1 cut(s) 1405
EcoRII CCWGG 1 cut(s) 530
EcoT14I CCWWGG 1 cut(s) 1250
EcoT22I ATGCAT 4 cut(s) 466, 595, 1293, 1297
EcoT38I GRGCYC 2 cut(s) 1104, 1194
ErhI CCWWGG 1 cut(s) 1250
Esp3I CGTCTC 1 cut(s) 1530
FaqI GGGAC 2 cut(s) 125, 878
Fnu4HI GCNGC 5 cut(s) 841, 1007, 1145, 1301, 1304
FokI GGATG 6 cut(s) 288, 315, 375, 588, 696, 765
FriOI GRGCYC 2 cut(s) 1104, 1194
Fsp4HI GCNGC 5 cut(s) 841, 1007, 1145, 1301, 1304
FspBI CTAG 4 cut(s) 908, 1274, 1373, 1592
GluI GCNGC 5 cut(s) 841, 1007, 1145, 1301, 1304
GsuI CTGGAG 2 cut(s) 16, 1417
HaeIII GGCC 3 cut(s) 121, 1074, 1147
HapII CCGG 2 cut(s) 543, 616
HincII GTYRAC 1 cut(s) 1556
HindII GTYRAC 1 cut(s) 1556
HinfI GANTC 4 cut(s) 209, 269, 920, 1320
HpaII CCGG 2 cut(s) 543, 616
HphI GGTGA 2 cut(s) 1231, 1499
Hpy166II GTNNAC 2 cut(s) 1460, 1556
Hpy188I TCNGA 6 cut(s) 49, 183, 646, 897, 1114, 1399
Hpy188III TCNNGA 6 cut(s) 62, 605, 812, 908, 962, 1328
Hpy8I GTNNAC 2 cut(s) 1460, 1556
HpyAV CCTTC 7 cut(s) 108, 977, 1052, 1334, 1394, 1447, 1578
HpyCH4III ACNGT 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 3 cut(s) 618, 627, 1297
Kzo9I GATC 3 cut(s) 79, 1463, 1506
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 35, 1003
Lsp1109I GCAGC 3 cut(s) 852, 1018, 1287
LweI GCATC 4 cut(s) 610, 1278, 1366, 1421
MaeI CTAG 4 cut(s) 908, 1274, 1373, 1592
MaeIII GTNAC 1 cut(s) 1219
MalI GATC 3 cut(s) 81, 1465, 1508
MboI GATC 3 cut(s) 79, 1463, 1506
MboII GAAGA 9 cut(s) 62, 149, 185, 233, 236, 1238, 1349, 1489, 1492
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 3 cut(s) 778, 1104, 1194
MlsI TGGCCA 2 cut(s) 121, 1074
MluCI AATT 7 cut(s) 580, 670, 974, 1134, 1227, 1405, 1441
MluNI TGGCCA 2 cut(s) 121, 1074
MlyI GAGTC 3 cut(s) 263, 914, 1314
MmeI TCCRAC 3 cut(s) 198, 767, 875
Mox20I TGGCCA 2 cut(s) 121, 1074
Mph1103I ATGCAT 4 cut(s) 466, 595, 1293, 1297
MscI TGGCCA 2 cut(s) 121, 1074
MseI TTAA 2 cut(s) 1308, 1497
MslI CAYNNNNRTG 3 cut(s) 60, 816, 1178
Msp20I TGGCCA 2 cut(s) 121, 1074
MspA1I CMGCKG 1 cut(s) 843
MspI CCGG 2 cut(s) 543, 616
MspR9I CCNGG 1 cut(s) 532
Mva1269I GAATGC 4 cut(s) 268, 595, 614, 950
MvaI CCWGG 1 cut(s) 532
MwoI GCNNNNNNNGC 3 cut(s) 618, 627, 1297
NdeII GATC 3 cut(s) 79, 1463, 1506
NlaIV GGNNCC 6 cut(s) 31, 81, 529, 620, 1589, 1615
NmuCI GTSAC 1 cut(s) 1219
NsiI ATGCAT 4 cut(s) 466, 595, 1293, 1297
NspI RCATGY 4 cut(s) 630, 1087, 1295, 1369
PaeI GCATGC 2 cut(s) 630, 1295
PagI TCATGA 2 cut(s) 61, 811
PciI ACATGT 1 cut(s) 1365
PciSI GCTCTTC 1 cut(s) 45
PctI GAATGC 4 cut(s) 268, 595, 614, 950
PfeI GAWTC 1 cut(s) 209
PflFI GACNNNGTC 2 cut(s) 1264, 1323
PflMI CCANNNNNTGG 2 cut(s) 1154, 1532
PfoI TCCNGGA 1 cut(s) 530
PkrI GCNGC 5 cut(s) 842, 1008, 1146, 1302, 1305
PleI GAGTC 3 cut(s) 263, 914, 1314
PpsI GAGTC 3 cut(s) 263, 914, 1314
PpuMI RGGWCCY 2 cut(s) 1587, 1614
PscI ACATGT 1 cut(s) 1365
Psp5II RGGWCCY 2 cut(s) 1587, 1614
Psp6I CCWGG 1 cut(s) 530
PspGI CCWGG 1 cut(s) 530
PspN4I GGNNCC 6 cut(s) 31, 81, 529, 620, 1589, 1615
PspPI GGNCC 4 cut(s) 95, 528, 1587, 1614
PspPPI RGGWCCY 2 cut(s) 1587, 1614
PsuI RGATCY 1 cut(s) 79
PsyI GACNNNGTC 2 cut(s) 1264, 1323
PvuII CAGCTG 1 cut(s) 843
RsaI GTAC 3 cut(s) 515, 636, 1459
RsaNI GTAC 3 cut(s) 514, 635, 1458
RseI CAYNNNNRTG 3 cut(s) 60, 816, 1178
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 1308, 1497
SatI GCNGC 5 cut(s) 841, 1007, 1145, 1301, 1304
Sau3AI GATC 3 cut(s) 79, 1463, 1506
Sau96I GGNCC 4 cut(s) 95, 528, 1587, 1614
SchI GAGTC 3 cut(s) 263, 914, 1314
ScrFI CCNGG 1 cut(s) 532
SduI GDGCHC 3 cut(s) 778, 1104, 1194
SfaNI GCATC 4 cut(s) 610, 1278, 1366, 1421
SinI GGWCC 4 cut(s) 95, 528, 1587, 1614
SmiMI CAYNNNNRTG 3 cut(s) 60, 816, 1178
SphI GCATGC 2 cut(s) 630, 1295
Sse9I AATT 7 cut(s) 580, 670, 974, 1134, 1227, 1405, 1441
SsiI CCGC 3 cut(s) 266, 1144, 1303
SspI AATATT 2 cut(s) 800, 1236
SspMI CTAG 4 cut(s) 908, 1274, 1373, 1592
StyD4I CCNGG 1 cut(s) 530
StyI CCWWGG 1 cut(s) 1250
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 4 cut(s) 445, 475, 1318, 1509
TasI AATT 7 cut(s) 580, 670, 974, 1134, 1227, 1405, 1441
TatI WGTACW 1 cut(s) 513
TauI GCSGC 2 cut(s) 1147, 1306
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 2 cut(s) 1308, 1497
Tru9I TTAA 2 cut(s) 1308, 1497
TscAI CASTG 1 cut(s) 1569
TseFI GTSAC 1 cut(s) 1219
TseI GCWGC 3 cut(s) 840, 1006, 1300
Tsp45I GTSAC 1 cut(s) 1219
TspDTI ATGAA 9 cut(s) 150, 243, 465, 828, 996, 1010, 1062, 1296, 1434
TspGWI ACGGA 3 cut(s) 471, 1190, 1554
TspRI CASTG 1 cut(s) 1569
Tth111I GACNNNGTC 2 cut(s) 1264, 1323
Van91I CCANNNNNTGG 2 cut(s) 1154, 1532
VpaK11BI GGWCC 4 cut(s) 95, 528, 1587, 1614
XagI CCTNNNNNAGG 2 cut(s) 1112, 1214
XapI RAATTY 2 cut(s) 974, 1405
XbaI TCTAGA 1 cut(s) 907
XceI RCATGY 4 cut(s) 630, 1087, 1295, 1369
XspI CTAG 4 cut(s) 908, 1274, 1373, 1592
Zsp2I ATGCAT 4 cut(s) 466, 595, 1293, 1297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.