Protein DA1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19270 AT1G19270 |
| fragaria_vesca | FvH4_2g40390 FvH4_2g40390 FvH4_2g40390 FvH4_2g40390 |
| malus_domestica | MD00G1039600.v1.1 MD08G1037200.v1.1 |
| prunus_persica | Prupe.1G384500_v2.0.a1 Prupe.1G384500_v2.0.a1 Prupe.1G384500_v2.0.a1 |
| pyrus_communis | pycom08g02960 pycom15g02890 |
| rosa_chinensis | RchiOBHm_Chr6g0300341 |
| rosa_laevigata | RLG00000011346 |
| rosa_multiflora | Rmu_sc0001670.1_g000021 |
| rosa_roxburghii | Rroxscaffold_7G00167880 |
| rosa_rugosa | Rorug06G0295000 Rorug06G0295100 Rorug06G0295200 Rorug06G0295200 |
| rosa_samantha | Rh6AG407900 Rh6BG415200 Rh6CG422600 Rh6DG408200 |
| rosa_wichuraiana | Rw6G035670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1341 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1169, 1189, 1547 |
| AciI | CCGC | 3 cut(s) | 1159, 1239, 1318 |
| AclWI | GGATC | 2 cut(s) | 74, 87 |
| AcoI | YGGCCR | 2 cut(s) | 1087, 1160 |
| AcsI | RAATTY | 1 cut(s) | 989 |
| AcuI | CTGAAG | 1 cut(s) | 1149 |
| AdeI | CACNNNGTG | 1 cut(s) | 1522 |
| AfaI | GTAC | 3 cut(s) | 530, 1474, 1603 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 284, 326, 368, 410, 452, 494, 1169, 1189, 1547 |
| AflIII | ACRYGT | 2 cut(s) | 1383, 1533 |
| AgsI | TTSAA | 5 cut(s) | 595, 782, 1046, 1155, 1355 |
| AjnI | CCWGG | 2 cut(s) | 545, 1518 |
| AluBI | AGCT | 7 cut(s) | 720, 858, 916, 1216, 1379, 1402, 1498 |
| AluI | AGCT | 7 cut(s) | 720, 858, 916, 1216, 1379, 1402, 1498 |
| Alw26I | GTCTC | 2 cut(s) | 276, 1100 |
| AlwI | GGATC | 2 cut(s) | 74, 87 |
| AoxI | GGCC | 4 cut(s) | 1087, 1114, 1160, 1395 |
| ApeKI | GCWGC | 5 cut(s) | 852, 855, 1021, 1315, 1419 |
| ApoI | RAATTY | 1 cut(s) | 989 |
| AspS9I | GGNCC | 3 cut(s) | 95, 543, 805 |
| AsuC2I | CCSGG | 2 cut(s) | 109, 1562 |
| AsuHPI | GGTGA | 2 cut(s) | 422, 1246 |
| AsuII | TTCGAA | 1 cut(s) | 1597 |
| AvaII | GGWCC | 3 cut(s) | 95, 543, 805 |
| BaeGI | GKGCMC | 2 cut(s) | 793, 897 |
| BalI | TGGCCA | 1 cut(s) | 1089 |
| BamHI | GGATCC | 1 cut(s) | 79 |
| BanII | GRGCYC | 1 cut(s) | 247 |
| BbsI | GAAGAC | 1 cut(s) | 1434 |
| BbvI | GCAGC | 5 cut(s) | 839, 867, 1033, 1302, 1431 |
| BccI | CCATC | 3 cut(s) | 732, 899, 1547 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1419, 1453 |
| BciT130I | CCWGG | 2 cut(s) | 547, 1520 |
| BciVI | GTATCC | 1 cut(s) | 943 |
| BcnI | CCSGG | 2 cut(s) | 109, 1562 |
| BcoDI | GTCTC | 2 cut(s) | 276, 1100 |
| BfaI | CTAG | 5 cut(s) | 309, 923, 1289, 1376, 1391 |
| BfmI | CTRYAG | 1 cut(s) | 853 |
| BfuI | GTATCC | 1 cut(s) | 943 |
| BglII | AGATCT | 1 cut(s) | 1478 |
| BisI | GCNGC | 7 cut(s) | 853, 856, 1022, 1160, 1316, 1319, 1420 |
| BlpI | GCTNAGC | 1 cut(s) | 11 |
| BlsI | GCNGC | 7 cut(s) | 854, 857, 1023, 1161, 1317, 1320, 1421 |
| Bme1390I | CCNGG | 4 cut(s) | 109, 547, 1520, 1562 |
| Bme18I | GGWCC | 3 cut(s) | 95, 543, 805 |
| BmgT120I | GGNCC | 3 cut(s) | 95, 543, 805 |
| BmiI | GGNNCC | 5 cut(s) | 31, 81, 544, 806, 873 |
| BmrFI | CCNGG | 4 cut(s) | 109, 547, 1520, 1562 |
| BmrI | ACTGGG | 2 cut(s) | 1287, 1535 |
| BmsI | GCATC | 3 cut(s) | 625, 1293, 1439 |
| BmuI | ACTGGG | 2 cut(s) | 1287, 1535 |
| BpiI | GAAGAC | 1 cut(s) | 1434 |
| BpmI | CTGGAG | 1 cut(s) | 16 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1414 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 11 |
| Bpu14I | TTCGAA | 1 cut(s) | 1597 |
| BpuMI | CCSGG | 2 cut(s) | 109, 1562 |
| BsaI | GGTCTC | 1 cut(s) | 1100 |
| BsaJI | CCNNGG | 6 cut(s) | 108, 845, 1163, 1188, 1265, 1455 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 104, 134 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 284, 326, 368, 410, 452, 494, 1169, 1189, 1547 |
| Bse1I | ACTGG | 3 cut(s) | 954, 1282, 1541 |
| Bse3DI | GCAATG | 1 cut(s) | 571 |
| BseBI | CCWGG | 2 cut(s) | 547, 1520 |
| BseDI | CCNNGG | 6 cut(s) | 108, 845, 1163, 1188, 1265, 1455 |
| BseGI | GGATG | 3 cut(s) | 616, 724, 793 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 284, 326, 368, 410, 452, 494, 1169, 1189, 1547 |
| BseMI | GCAATG | 1 cut(s) | 571 |
| BseMII | CTCAG | 5 cut(s) | 227, 561, 1095, 1428, 1496 |
| BseNI | ACTGG | 3 cut(s) | 954, 1282, 1541 |
| BseRI | GAGGAG | 7 cut(s) | 264, 306, 348, 390, 432, 474, 834 |
| BseSI | GKGCMC | 2 cut(s) | 793, 897 |
| BseXI | GCAGC | 5 cut(s) | 839, 867, 1033, 1302, 1431 |
| BshFI | GGCC | 4 cut(s) | 1089, 1116, 1162, 1397 |
| BsiSI | CCGG | 2 cut(s) | 108, 1561 |
| BslFI | GGGAC | 1 cut(s) | 1522 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 284, 326, 368, 410, 452, 494, 1169, 1189, 1547 |
| BsmAI | GTCTC | 2 cut(s) | 276, 1100 |
| BsmFI | GGGAC | 1 cut(s) | 1522 |
| BsmI | GAATGC | 1 cut(s) | 610 |
| BsnI | GGCC | 4 cut(s) | 1089, 1116, 1162, 1397 |
| Bso31I | GGTCTC | 1 cut(s) | 1100 |
| Bsp119I | TTCGAA | 1 cut(s) | 1597 |
| Bsp1286I | GDGCHC | 3 cut(s) | 247, 793, 897 |
| Bsp143I | GATC | 2 cut(s) | 79, 1478 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 11 |
| Bsp19I | CCATGG | 1 cut(s) | 1188 |
| BspACI | CCGC | 3 cut(s) | 1159, 1239, 1318 |
| BspANI | GGCC | 4 cut(s) | 1089, 1116, 1162, 1397 |
| BspCNI | CTCAG | 5 cut(s) | 226, 562, 1096, 1427, 1495 |
| BspHI | TCATGA | 1 cut(s) | 826 |
| BspLI | GGNNCC | 5 cut(s) | 31, 81, 544, 806, 873 |
| BspMAI | CTGCAG | 1 cut(s) | 857 |
| BspPI | GGATC | 2 cut(s) | 74, 87 |
| BspQI | GCTCTTC | 1 cut(s) | 45 |
| BspT104I | TTCGAA | 1 cut(s) | 1597 |
| BspTNI | GGTCTC | 1 cut(s) | 1100 |
| BsrDI | GCAATG | 1 cut(s) | 571 |
| BsrI | ACTGG | 3 cut(s) | 954, 1282, 1541 |
| BssECI | CCNNGG | 6 cut(s) | 108, 845, 1163, 1188, 1265, 1455 |
| BssMI | GATC | 2 cut(s) | 79, 1478 |
| BssT1I | CCWWGG | 2 cut(s) | 1188, 1265 |
| Bst2UI | CCWGG | 2 cut(s) | 547, 1520 |
| Bst4CI | ACNGT | 3 cut(s) | 92, 149, 1167 |
| Bst6I | CTCTTC | 2 cut(s) | 45, 1350 |
| BstBI | TTCGAA | 1 cut(s) | 1597 |
| BstC8I | GCNNGC | 4 cut(s) | 643, 746, 961, 1308 |
| BstDEI | CTNAG | 8 cut(s) | 11, 213, 570, 1104, 1340, 1414, 1482, 1606 |
| BstDSI | CCRYGG | 2 cut(s) | 1163, 1188 |
| BstEII | GGTNACC | 2 cut(s) | 1234, 1328 |
| BstF5I | GGATG | 3 cut(s) | 616, 724, 793 |
| BstKTI | GATC | 2 cut(s) | 82, 1481 |
| BstMAI | GTCTC | 2 cut(s) | 276, 1100 |
| BstMBI | GATC | 2 cut(s) | 79, 1478 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 871, 1213, 1312, 1419 |
| BstNI | CCWGG | 2 cut(s) | 547, 1520 |
| BstNSI | RCATGY | 6 cut(s) | 645, 963, 1102, 1310, 1387, 1537 |
| BstPI | GGTNACC | 2 cut(s) | 1234, 1328 |
| BstSCI | CCNGG | 4 cut(s) | 107, 545, 1518, 1560 |
| BstSFI | CTRYAG | 1 cut(s) | 853 |
| BstSLI | GKGCMC | 2 cut(s) | 793, 897 |
| BstV1I | GCAGC | 5 cut(s) | 839, 867, 1033, 1302, 1431 |
| BstV2I | GAAGAC | 1 cut(s) | 1434 |
| BstX2I | RGATCY | 2 cut(s) | 79, 1478 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1195 |
| BstYI | RGATCY | 2 cut(s) | 79, 1478 |
| BsuI | GTATCC | 1 cut(s) | 943 |
| BsuRI | GGCC | 4 cut(s) | 1089, 1116, 1162, 1397 |
| BtgI | CCRYGG | 2 cut(s) | 1163, 1188 |
| BtgZI | GCGATG | 1 cut(s) | 1437 |
| BtsCI | GGATG | 3 cut(s) | 616, 724, 793 |
| BtsI | GCAGTG | 1 cut(s) | 765 |
| BtsIMutI | CAGTG | 2 cut(s) | 765, 961 |
| Cac8I | GCNNGC | 4 cut(s) | 643, 746, 961, 1308 |
| CciI | TCATGA | 1 cut(s) | 826 |
| Cfr13I | GGNCC | 3 cut(s) | 95, 543, 805 |
| CsiI | ACCWGGT | 1 cut(s) | 1518 |
| Csp6I | GTAC | 3 cut(s) | 529, 1473, 1602 |
| CviQI | GTAC | 3 cut(s) | 529, 1473, 1602 |
| DdeI | CTNAG | 8 cut(s) | 11, 213, 570, 1104, 1340, 1414, 1482, 1606 |
| DpnI | GATC | 2 cut(s) | 81, 1480 |
| DpnII | GATC | 2 cut(s) | 79, 1478 |
| DraI | TTTAAA | 3 cut(s) | 25, 1005, 1513 |
| DraIII | CACNNNGTG | 1 cut(s) | 1522 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1341 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1341 |
| EaeI | YGGCCR | 2 cut(s) | 1087, 1160 |
| Eam1104I | CTCTTC | 2 cut(s) | 45, 1350 |
| EarI | CTCTTC | 2 cut(s) | 45, 1350 |
| Eco130I | CCWWGG | 2 cut(s) | 1188, 1265 |
| Eco147I | AGGCCT | 1 cut(s) | 1116 |
| Eco24I | GRGCYC | 1 cut(s) | 247 |
| Eco31I | GGTCTC | 1 cut(s) | 1100 |
| Eco47I | GGWCC | 3 cut(s) | 95, 543, 805 |
| Eco57I | CTGAAG | 1 cut(s) | 1149 |
| Eco91I | GGTNACC | 2 cut(s) | 1234, 1328 |
| EcoO65I | GGTNACC | 2 cut(s) | 1234, 1328 |
| EcoRII | CCWGG | 2 cut(s) | 545, 1518 |
| EcoT14I | CCWWGG | 2 cut(s) | 1188, 1265 |
| EcoT22I | ATGCAT | 3 cut(s) | 511, 1308, 1312 |
| EcoT38I | GRGCYC | 1 cut(s) | 247 |
| ErhI | CCWWGG | 2 cut(s) | 1188, 1265 |
| FaqI | GGGAC | 1 cut(s) | 1522 |
| Fnu4HI | GCNGC | 7 cut(s) | 853, 856, 1022, 1160, 1316, 1319, 1420 |
| FokI | GGATG | 3 cut(s) | 603, 711, 780 |
| FriOI | GRGCYC | 1 cut(s) | 247 |
| Fsp4HI | GCNGC | 7 cut(s) | 853, 856, 1022, 1160, 1316, 1319, 1420 |
| FspBI | CTAG | 5 cut(s) | 309, 923, 1289, 1376, 1391 |
| GluI | GCNGC | 7 cut(s) | 853, 856, 1022, 1160, 1316, 1319, 1420 |
| GsuI | CTGGAG | 1 cut(s) | 16 |
| HaeIII | GGCC | 4 cut(s) | 1089, 1116, 1162, 1397 |
| HapII | CCGG | 2 cut(s) | 108, 1561 |
| HincII | GTYRAC | 1 cut(s) | 1571 |
| HindII | GTYRAC | 1 cut(s) | 1571 |
| HinfI | GANTC | 5 cut(s) | 209, 269, 935, 1526, 1557 |
| HpaII | CCGG | 2 cut(s) | 108, 1561 |
| HphI | GGTGA | 2 cut(s) | 422, 1246 |
| Hpy166II | GTNNAC | 2 cut(s) | 95, 1571 |
| Hpy188I | TCNGA | 7 cut(s) | 49, 124, 261, 661, 912, 1129, 1531 |
| Hpy188III | TCNNGA | 8 cut(s) | 62, 620, 808, 827, 923, 932, 977, 1346 |
| Hpy8I | GTNNAC | 2 cut(s) | 95, 1571 |
| Hpy99I | CGWCG | 1 cut(s) | 1227 |
| HpyAV | CCTTC | 5 cut(s) | 108, 831, 992, 1067, 1462 |
| HpyCH4III | ACNGT | 3 cut(s) | 92, 149, 1167 |
| HpyCH4IV | ACGT | 1 cut(s) | 1631 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 871, 1213, 1312, 1419 |
| HpyF3I | CTNAG | 8 cut(s) | 11, 213, 570, 1104, 1340, 1414, 1482, 1606 |
| HpySE526I | ACGT | 1 cut(s) | 1631 |
| Kzo9I | GATC | 2 cut(s) | 79, 1478 |
| LguI | GCTCTTC | 1 cut(s) | 45 |
| LmnI | GCTCC | 3 cut(s) | 35, 871, 1018 |
| Lsp1109I | GCAGC | 5 cut(s) | 839, 867, 1033, 1302, 1431 |
| LweI | GCATC | 3 cut(s) | 625, 1293, 1439 |
| MabI | ACCWGGT | 1 cut(s) | 1518 |
| MaeI | CTAG | 5 cut(s) | 309, 923, 1289, 1376, 1391 |
| MaeII | ACGT | 1 cut(s) | 1631 |
| MaeIII | GTNAC | 4 cut(s) | 1032, 1198, 1234, 1328 |
| MalI | GATC | 2 cut(s) | 81, 1480 |
| MboI | GATC | 2 cut(s) | 79, 1478 |
| MflI | RGATCY | 2 cut(s) | 79, 1478 |
| MhlI | GDGCHC | 3 cut(s) | 247, 793, 897 |
| MlsI | TGGCCA | 1 cut(s) | 1089 |
| MluCI | AATT | 7 cut(s) | 67, 192, 595, 654, 989, 1013, 1242 |
| MluNI | TGGCCA | 1 cut(s) | 1089 |
| MlyI | GAGTC | 2 cut(s) | 278, 929 |
| MmeI | TCCRAC | 3 cut(s) | 198, 782, 890 |
| Mox20I | TGGCCA | 1 cut(s) | 1089 |
| Mph1103I | ATGCAT | 3 cut(s) | 511, 1308, 1312 |
| MscI | TGGCCA | 1 cut(s) | 1089 |
| MseI | TTAA | 6 cut(s) | 24, 900, 1004, 1058, 1323, 1512 |
| MslI | CAYNNNNRTG | 4 cut(s) | 60, 288, 372, 1193 |
| Msp20I | TGGCCA | 1 cut(s) | 1089 |
| MspA1I | CMGCKG | 1 cut(s) | 858 |
| MspI | CCGG | 2 cut(s) | 108, 1561 |
| MspR9I | CCNGG | 4 cut(s) | 109, 547, 1520, 1562 |
| Mva1269I | GAATGC | 1 cut(s) | 610 |
| MvaI | CCWGG | 2 cut(s) | 547, 1520 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 871, 1213, 1312, 1419 |
| NciI | CCSGG | 2 cut(s) | 109, 1562 |
| NcoI | CCATGG | 1 cut(s) | 1188 |
| NdeII | GATC | 2 cut(s) | 79, 1478 |
| NlaIV | GGNNCC | 5 cut(s) | 31, 81, 544, 806, 873 |
| NmeAIII | GCCGAG | 2 cut(s) | 1423, 1436 |
| NmuCI | GTSAC | 1 cut(s) | 1234 |
| NsiI | ATGCAT | 3 cut(s) | 511, 1308, 1312 |
| NspI | RCATGY | 6 cut(s) | 645, 963, 1102, 1310, 1387, 1537 |
| NspV | TTCGAA | 1 cut(s) | 1597 |
| PaeI | GCATGC | 3 cut(s) | 645, 963, 1310 |
| PagI | TCATGA | 1 cut(s) | 826 |
| PceI | AGGCCT | 1 cut(s) | 1116 |
| PciI | ACATGT | 2 cut(s) | 1383, 1533 |
| PciSI | GCTCTTC | 1 cut(s) | 45 |
| PctI | GAATGC | 1 cut(s) | 610 |
| PfeI | GAWTC | 3 cut(s) | 209, 1526, 1557 |
| PflFI | GACNNNGTC | 1 cut(s) | 1279 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1169, 1189, 1547 |
| PfoI | TCCNGGA | 1 cut(s) | 545 |
| PkrI | GCNGC | 7 cut(s) | 854, 857, 1023, 1161, 1317, 1320, 1421 |
| PleI | GAGTC | 2 cut(s) | 277, 929 |
| PpsI | GAGTC | 2 cut(s) | 277, 929 |
| PscI | ACATGT | 2 cut(s) | 1383, 1533 |
| Psp6I | CCWGG | 2 cut(s) | 545, 1518 |
| PspEI | GGTNACC | 2 cut(s) | 1234, 1328 |
| PspGI | CCWGG | 2 cut(s) | 545, 1518 |
| PspN4I | GGNNCC | 5 cut(s) | 31, 81, 544, 806, 873 |
| PspPI | GGNCC | 3 cut(s) | 95, 543, 805 |
| PstI | CTGCAG | 1 cut(s) | 857 |
| PsuI | RGATCY | 2 cut(s) | 79, 1478 |
| PsyI | GACNNNGTC | 1 cut(s) | 1279 |
| PvuII | CAGCTG | 1 cut(s) | 858 |
| RsaI | GTAC | 3 cut(s) | 530, 1474, 1603 |
| RsaNI | GTAC | 3 cut(s) | 529, 1473, 1602 |
| RseI | CAYNNNNRTG | 4 cut(s) | 60, 288, 372, 1193 |
| SapI | GCTCTTC | 1 cut(s) | 45 |
| SaqAI | TTAA | 6 cut(s) | 24, 900, 1004, 1058, 1323, 1512 |
| SatI | GCNGC | 7 cut(s) | 853, 856, 1022, 1160, 1316, 1319, 1420 |
| Sau3AI | GATC | 2 cut(s) | 79, 1478 |
| Sau96I | GGNCC | 3 cut(s) | 95, 543, 805 |
| SchI | GAGTC | 2 cut(s) | 278, 929 |
| ScrFI | CCNGG | 4 cut(s) | 109, 547, 1520, 1562 |
| SduI | GDGCHC | 3 cut(s) | 247, 793, 897 |
| SexAI | ACCWGGT | 1 cut(s) | 1518 |
| SfaNI | GCATC | 3 cut(s) | 625, 1293, 1439 |
| SfcI | CTRYAG | 1 cut(s) | 853 |
| SfuI | TTCGAA | 1 cut(s) | 1597 |
| SinI | GGWCC | 3 cut(s) | 95, 543, 805 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 60, 288, 372, 1193 |
| SphI | GCATGC | 3 cut(s) | 645, 963, 1310 |
| Sse9I | AATT | 7 cut(s) | 67, 192, 595, 654, 989, 1013, 1242 |
| SseBI | AGGCCT | 1 cut(s) | 1116 |
| SsiI | CCGC | 3 cut(s) | 1159, 1239, 1318 |
| SspMI | CTAG | 5 cut(s) | 309, 923, 1289, 1376, 1391 |
| StuI | AGGCCT | 1 cut(s) | 1116 |
| StyD4I | CCNGG | 4 cut(s) | 107, 545, 1518, 1560 |
| StyI | CCWWGG | 2 cut(s) | 1188, 1265 |
| TaaI | ACNGT | 3 cut(s) | 92, 149, 1167 |
| TaiI | ACGT | 1 cut(s) | 1634 |
| TaqI | TCGA | 1 cut(s) | 1597 |
| TasI | AATT | 7 cut(s) | 67, 192, 595, 654, 989, 1013, 1242 |
| TatI | WGTACW | 1 cut(s) | 528 |
| TauI | GCSGC | 2 cut(s) | 1162, 1321 |
| TfiI | GAWTC | 3 cut(s) | 209, 1526, 1557 |
| Tru1I | TTAA | 6 cut(s) | 24, 900, 1004, 1058, 1323, 1512 |
| Tru9I | TTAA | 6 cut(s) | 24, 900, 1004, 1058, 1323, 1512 |
| TscAI | CASTG | 2 cut(s) | 772, 961 |
| TseFI | GTSAC | 1 cut(s) | 1234 |
| TseI | GCWGC | 5 cut(s) | 852, 855, 1021, 1315, 1419 |
| Tsp45I | GTSAC | 1 cut(s) | 1234 |
| TspDTI | ATGAA | 7 cut(s) | 150, 243, 390, 843, 1011, 1025, 1077 |
| TspGWI | ACGGA | 2 cut(s) | 620, 1020 |
| TspRI | CASTG | 2 cut(s) | 772, 961 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1279 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1169, 1189, 1547 |
| VpaK11BI | GGWCC | 3 cut(s) | 95, 543, 805 |
| XapI | RAATTY | 1 cut(s) | 989 |
| XbaI | TCTAGA | 1 cut(s) | 922 |
| XceI | RCATGY | 6 cut(s) | 645, 963, 1102, 1310, 1387, 1537 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 287, 329, 413, 455 |
| XspI | CTAG | 5 cut(s) | 309, 923, 1289, 1376, 1391 |
| Zsp2I | ATGCAT | 3 cut(s) | 511, 1308, 1312 |