RLG00000011346

Protein DA1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
8771831 .. 8775575
3745 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011346

Sequence Viewer

Length: 1641 bp
ATGGGTTGGCTTAGCAAGATTTTCAAAGGCTCCAGCCACAAAATATCAGAAGAGCATTGTCATGAGAACGATGGAGGGGATCCAAATACCGATGGTCCTTCTTGTTCAGGGGACATCTGGCCGGAAAATGAGAATGAAGATATAGACCGTGCTATTGCATTATCTCTTTTAGAAGAAAATCAAAAAGGAAAAAATGTGATTGATTTTGATTCTCAGTTGGAAGAAGATGAACAACTTGCCAGAGCCTTACAAGAAAGTTTGAATGTGGACTCTCCTCCCCGATATGGAAATGGAAATACACATCCTCCTCAATATGGAAATGGAAATACACATCCTCCTCAATATGGAGGAAATCCACATCCTCCTCAATATGGAAATGGAAATACAGATCCTCCTCAATATGGGAATGGAAATACACATCCTCCCCGATATGGAAATGGAAATACACTTCCTCCTCGATATGAAAACGGAAATGCATATCCTCCTCGATATGGAAATGGACATACATATCCACCTATCCCCATGTACTATCCAATGGGGTCCAGGATTTGTGCCGGTTGCAATGCTGAGATTGGTTTTGGACGATATTTGAATTGCCTGAATGCATTTTGGCATCCAGAATGCTTCCGGTGCCGTGCATGCAATGTACCGATTTCCGATTACGAGTTTTCTACATCTGGGAATTACCCTTACCACAAATCTTGCTATAAGGAGAGCTACCATCCAAAATGTGATGTTTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTTTGGGTTCAAAAATATTGCCCATCTCATGAACATGATAATACTCCTCGGTGTTGCAGCTGTGAGCGAATGGAGGCACGGGACACAGCATATATAAATCTAAATGATGGTCGGAAGCTCTGTCTAGAGTGTTTGGACTCTGCAATCATGGATACCAGCGAATGCCAACCCCTATATCTTGATATACAGGAATTCTATGAAGGTTTGAATATGAAAGTGGAGCAGCAAGTTCCATTACTTTTGGTTGAAAGGGAAGCACTAAATGAAGCGAGAGAAGGAGAAAGAAATGGCCATTATCACATGCCTGAGACCAGAGGGCTCTGCCTTTCTGAGGAACAGACTATTAGCACAATTTCAAGGCGGCCAAAGTTTGGGGCAGGAAACCGAGCCACGGACATGATAACAGAGCCCTACAAACTAACTCGTCTCTGTGAGGTGACGGCAATTCTAATATTGTATGGTCTTCCAAGGTTGCTGACGGGGTCTATCCTAGCACATGAAATGATGCATGCATGGCTGCGGCTTAAAGGTTATCGACTCAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTATAGCTCACATGTGGCTAGATGCCGAGCTTATGTCTGGCTCAGAAGGGAATTCTGCATCTACATCATCATCGTCCTCCAGTTCCAATTCATCAAAGAAGGGTACACGATCTCAGTTTGAGAAGAAGATTGGTGAGTTCTTTAAGCACCAGATCGAAGTAGATATTTCCCCAGTATATGGAGACGGATATAGGGCTGGTCAACAGGCAGTGAATAAATACGGGCTTAGAAGGACCCTAGACCATATTAGAATGACTGGGACCTTTCCTTATTGA

Protein Analysis

547

Amino Acids

61.57

Weight (kDa)

5.71

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIM PF00412 184 - 238 4.5e-09 LIM domain
DA1-like PF12315 333 - 541 9.3e-100 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 630
AccB7I CCANNNNNTGG 2 cut(s) 1166, 1544
AciI CCGC 2 cut(s) 1156, 1315
AclWI GGATC 3 cut(s) 74, 87, 383
AcoI YGGCCR 3 cut(s) 119, 1084, 1157
AcsI RAATTY 2 cut(s) 986, 1417
AfaI GTAC 3 cut(s) 527, 648, 1471
AflIII ACRYGT 1 cut(s) 1377
AgsI TTSAA 9 cut(s) 25, 262, 592, 779, 806, 1003, 1043, 1152, 1349
AjnI CCWGG 1 cut(s) 542
AluBI AGCT 5 cut(s) 717, 855, 913, 1373, 1396
AluI AGCT 5 cut(s) 717, 855, 913, 1373, 1396
Alw26I GTCTC 3 cut(s) 1097, 1226, 1542
AlwI GGATC 3 cut(s) 74, 87, 383
AoxI GGCC 3 cut(s) 119, 1084, 1157
ApeKI GCWGC 3 cut(s) 852, 1018, 1312
ApoI RAATTY 2 cut(s) 986, 1417
AspS9I GGNCC 4 cut(s) 95, 540, 1599, 1626
AsuHPI GGTGA 2 cut(s) 1243, 1511
AvaII GGWCC 4 cut(s) 95, 540, 1599, 1626
BaeGI GKGCMC 1 cut(s) 790
BalI TGGCCA 1 cut(s) 1086
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 630
BanII GRGCYC 2 cut(s) 1116, 1206
BbsI GAAGAC 1 cut(s) 1250
BbvI GCAGC 3 cut(s) 864, 1030, 1299
BccI CCATC 5 cut(s) 65, 86, 729, 826, 896
BceAI ACGGC 2 cut(s) 618, 1251
BciT130I CCWGG 1 cut(s) 544
BciVI GTATCC 1 cut(s) 940
BcoDI GTCTC 3 cut(s) 1097, 1226, 1542
BfaI CTAG 4 cut(s) 920, 1286, 1385, 1604
BfuI GTATCC 1 cut(s) 940
BisI GCNGC 5 cut(s) 853, 1019, 1157, 1313, 1316
BlpI GCTNAGC 1 cut(s) 11
BlsI GCNGC 5 cut(s) 854, 1020, 1158, 1314, 1317
Bme1390I CCNGG 1 cut(s) 544
Bme18I GGWCC 4 cut(s) 95, 540, 1599, 1626
BmgT120I GGNCC 4 cut(s) 95, 540, 1599, 1626
BmiI GGNNCC 6 cut(s) 31, 81, 541, 632, 1601, 1627
BmrFI CCNGG 1 cut(s) 544
BmrI ACTGGG 2 cut(s) 1532, 1632
BmsI GCATC 4 cut(s) 622, 1290, 1378, 1433
BmuI ACTGGG 2 cut(s) 1532, 1632
BpiI GAAGAC 1 cut(s) 1250
BpmI CTGGAG 2 cut(s) 16, 1429
Bpu1102I GCTNAGC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 1097
BsaJI CCNNGG 3 cut(s) 842, 1185, 1262
BsaWI WCCGGW 1 cut(s) 627
Bse118I RCCGGY 1 cut(s) 554
Bse1I ACTGG 3 cut(s) 1446, 1538, 1627
Bse3DI GCAATG 2 cut(s) 568, 649
BseBI CCWGG 1 cut(s) 544
BseDI CCNNGG 3 cut(s) 842, 1185, 1262
BseGI GGATG 7 cut(s) 301, 331, 358, 418, 613, 721, 790
BseMI GCAATG 2 cut(s) 568, 649
BseMII CTCAG 7 cut(s) 227, 558, 1092, 1116, 1348, 1422, 1493
BseNI ACTGG 3 cut(s) 1446, 1538, 1627
BseRI GAGGAG 8 cut(s) 264, 297, 327, 354, 384, 444, 474, 831
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 3 cut(s) 864, 1030, 1299
BshFI GGCC 3 cut(s) 121, 1086, 1159
BshNI GGYRCC 1 cut(s) 630
BsiSI CCGG 3 cut(s) 122, 555, 628
BslFI GGGAC 2 cut(s) 125, 890
BsmAI GTCTC 3 cut(s) 1097, 1226, 1542
BsmBI CGTCTC 2 cut(s) 1226, 1542
BsmFI GGGAC 2 cut(s) 125, 890
BsmI GAATGC 3 cut(s) 607, 626, 962
BsnI GGCC 3 cut(s) 121, 1086, 1159
Bso31I GGTCTC 1 cut(s) 1097
Bsp1286I GDGCHC 3 cut(s) 790, 1116, 1206
Bsp143I GATC 4 cut(s) 79, 388, 1475, 1518
Bsp1720I GCTNAGC 1 cut(s) 11
BspACI CCGC 2 cut(s) 1156, 1315
BspANI GGCC 3 cut(s) 121, 1086, 1159
BspCNI CTCAG 7 cut(s) 226, 559, 1093, 1117, 1347, 1421, 1492
BspHI TCATGA 2 cut(s) 61, 823
BspLI GGNNCC 6 cut(s) 31, 81, 541, 632, 1601, 1627
BspPI GGATC 3 cut(s) 74, 87, 383
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 630
BspTNI GGTCTC 1 cut(s) 1097
BsrDI GCAATG 2 cut(s) 568, 649
BsrFI RCCGGY 1 cut(s) 554
BsrI ACTGG 3 cut(s) 1446, 1538, 1627
BssAI RCCGGY 1 cut(s) 554
BssECI CCNNGG 3 cut(s) 842, 1185, 1262
BssMI GATC 4 cut(s) 79, 388, 1475, 1518
BssT1I CCWWGG 1 cut(s) 1262
Bst2UI CCWGG 1 cut(s) 544
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 3 cut(s) 640, 743, 1305
BstDEI CTNAG 9 cut(s) 11, 213, 567, 1101, 1125, 1334, 1408, 1479, 1592
BstDSI CCRYGG 1 cut(s) 1185
BstENI CCTNNNNNAGG 1 cut(s) 1124
BstF5I GGATG 7 cut(s) 301, 331, 358, 418, 613, 721, 790
BstKTI GATC 4 cut(s) 82, 391, 1478, 1521
BstMAI GTCTC 3 cut(s) 1097, 1226, 1542
BstMBI GATC 4 cut(s) 79, 388, 1475, 1518
BstMWI GCNNNNNNNGC 3 cut(s) 630, 639, 1309
BstNI CCWGG 1 cut(s) 544
BstNSI RCATGY 4 cut(s) 642, 1099, 1307, 1381
BstSCI CCNGG 1 cut(s) 542
BstSLI GKGCMC 1 cut(s) 790
BstV1I GCAGC 3 cut(s) 864, 1030, 1299
BstV2I GAAGAC 1 cut(s) 1250
BstX2I RGATCY 2 cut(s) 79, 388
BstYI RGATCY 2 cut(s) 79, 388
BsuI GTATCC 1 cut(s) 940
BsuRI GGCC 3 cut(s) 121, 1086, 1159
BtgI CCRYGG 1 cut(s) 1185
BtsCI GGATG 7 cut(s) 301, 331, 358, 418, 613, 721, 790
BtsI GCAGTG 1 cut(s) 1581
BtsIMutI CAGTG 1 cut(s) 1581
Cac8I GCNNGC 3 cut(s) 640, 743, 1305
CciI TCATGA 2 cut(s) 61, 823
Cfr10I RCCGGY 1 cut(s) 554
Cfr13I GGNCC 4 cut(s) 95, 540, 1599, 1626
Csp6I GTAC 3 cut(s) 526, 647, 1470
CspCI CAANNNNNGTGG 2 cut(s) 683, 718
CviQI GTAC 3 cut(s) 526, 647, 1470
DdeI CTNAG 9 cut(s) 11, 213, 567, 1101, 1125, 1334, 1408, 1479, 1592
DpnI GATC 4 cut(s) 81, 390, 1477, 1520
DpnII GATC 4 cut(s) 79, 388, 1475, 1518
EaeI YGGCCR 3 cut(s) 119, 1084, 1157
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 1262
Eco24I GRGCYC 2 cut(s) 1116, 1206
Eco31I GGTCTC 1 cut(s) 1097
Eco47I GGWCC 4 cut(s) 95, 540, 1599, 1626
EcoNI CCTNNNNNAGG 1 cut(s) 1124
EcoO109I RGGNCCY 2 cut(s) 1599, 1626
EcoRI GAATTC 2 cut(s) 986, 1417
EcoRII CCWGG 1 cut(s) 542
EcoT14I CCWWGG 1 cut(s) 1262
EcoT22I ATGCAT 4 cut(s) 478, 607, 1305, 1309
EcoT38I GRGCYC 2 cut(s) 1116, 1206
ErhI CCWWGG 1 cut(s) 1262
Esp3I CGTCTC 2 cut(s) 1226, 1542
FaqI GGGAC 2 cut(s) 125, 890
Fnu4HI GCNGC 5 cut(s) 853, 1019, 1157, 1313, 1316
FokI GGATG 7 cut(s) 288, 318, 345, 405, 600, 708, 777
FriOI GRGCYC 2 cut(s) 1116, 1206
Fsp4HI GCNGC 5 cut(s) 853, 1019, 1157, 1313, 1316
FspBI CTAG 4 cut(s) 920, 1286, 1385, 1604
GluI GCNGC 5 cut(s) 853, 1019, 1157, 1313, 1316
GsuI CTGGAG 2 cut(s) 16, 1429
HaeIII GGCC 3 cut(s) 121, 1086, 1159
HapII CCGG 3 cut(s) 122, 555, 628
HincII GTYRAC 1 cut(s) 1568
HindII GTYRAC 1 cut(s) 1568
HinfI GANTC 4 cut(s) 209, 269, 932, 1332
HpaII CCGG 3 cut(s) 122, 555, 628
HphI GGTGA 2 cut(s) 1243, 1511
Hpy166II GTNNAC 3 cut(s) 268, 1472, 1568
Hpy188I TCNGA 5 cut(s) 49, 658, 909, 1126, 1411
Hpy188III TCNNGA 6 cut(s) 62, 617, 824, 920, 974, 1340
Hpy8I GTNNAC 3 cut(s) 268, 1472, 1568
HpyAV CCTTC 7 cut(s) 108, 989, 1064, 1346, 1406, 1459, 1590
HpyCH4III ACNGT 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 3 cut(s) 630, 639, 1309
HpyF3I CTNAG 9 cut(s) 11, 213, 567, 1101, 1125, 1334, 1408, 1479, 1592
Kzo9I GATC 4 cut(s) 79, 388, 1475, 1518
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 35, 1015
Lsp1109I GCAGC 3 cut(s) 864, 1030, 1299
LweI GCATC 4 cut(s) 622, 1290, 1378, 1433
MaeI CTAG 4 cut(s) 920, 1286, 1385, 1604
MaeIII GTNAC 1 cut(s) 1231
MalI GATC 4 cut(s) 81, 390, 1477, 1520
MboI GATC 4 cut(s) 79, 388, 1475, 1518
MboII GAAGA 9 cut(s) 62, 149, 185, 233, 236, 1250, 1361, 1501, 1504
MflI RGATCY 2 cut(s) 79, 388
MhlI GDGCHC 3 cut(s) 790, 1116, 1206
MlsI TGGCCA 1 cut(s) 1086
MluCI AATT 7 cut(s) 592, 682, 986, 1146, 1239, 1417, 1453
MluNI TGGCCA 1 cut(s) 1086
MlyI GAGTC 3 cut(s) 263, 926, 1326
MmeI TCCRAC 3 cut(s) 198, 779, 887
Mox20I TGGCCA 1 cut(s) 1086
Mph1103I ATGCAT 4 cut(s) 478, 607, 1305, 1309
MscI TGGCCA 1 cut(s) 1086
MseI TTAA 2 cut(s) 1320, 1509
MslI CAYNNNNRTG 3 cut(s) 60, 828, 1190
Msp20I TGGCCA 1 cut(s) 1086
MspA1I CMGCKG 1 cut(s) 855
MspI CCGG 3 cut(s) 122, 555, 628
MspR9I CCNGG 1 cut(s) 544
Mva1269I GAATGC 3 cut(s) 607, 626, 962
MvaI CCWGG 1 cut(s) 544
MwoI GCNNNNNNNGC 3 cut(s) 630, 639, 1309
NdeII GATC 4 cut(s) 79, 388, 1475, 1518
NlaIV GGNNCC 6 cut(s) 31, 81, 541, 632, 1601, 1627
NmeAIII GCCGAG 1 cut(s) 1417
NmuCI GTSAC 1 cut(s) 1231
NsiI ATGCAT 4 cut(s) 478, 607, 1305, 1309
NspI RCATGY 4 cut(s) 642, 1099, 1307, 1381
PaeI GCATGC 2 cut(s) 642, 1307
PagI TCATGA 2 cut(s) 61, 823
PciI ACATGT 1 cut(s) 1377
PciSI GCTCTTC 1 cut(s) 45
PctI GAATGC 3 cut(s) 607, 626, 962
PfeI GAWTC 1 cut(s) 209
PflFI GACNNNGTC 2 cut(s) 1276, 1335
PflMI CCANNNNNTGG 2 cut(s) 1166, 1544
PfoI TCCNGGA 1 cut(s) 542
PkrI GCNGC 5 cut(s) 854, 1020, 1158, 1314, 1317
PleI GAGTC 3 cut(s) 263, 926, 1326
PpsI GAGTC 3 cut(s) 263, 926, 1326
PpuMI RGGWCCY 2 cut(s) 1599, 1626
PscI ACATGT 1 cut(s) 1377
Psp5II RGGWCCY 2 cut(s) 1599, 1626
Psp6I CCWGG 1 cut(s) 542
PspGI CCWGG 1 cut(s) 542
PspN4I GGNNCC 6 cut(s) 31, 81, 541, 632, 1601, 1627
PspPI GGNCC 4 cut(s) 95, 540, 1599, 1626
PspPPI RGGWCCY 2 cut(s) 1599, 1626
PsuI RGATCY 2 cut(s) 79, 388
PsyI GACNNNGTC 2 cut(s) 1276, 1335
PvuII CAGCTG 1 cut(s) 855
RsaI GTAC 3 cut(s) 527, 648, 1471
RsaNI GTAC 3 cut(s) 526, 647, 1470
RseI CAYNNNNRTG 3 cut(s) 60, 828, 1190
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 1320, 1509
SatI GCNGC 5 cut(s) 853, 1019, 1157, 1313, 1316
Sau3AI GATC 4 cut(s) 79, 388, 1475, 1518
Sau96I GGNCC 4 cut(s) 95, 540, 1599, 1626
SchI GAGTC 3 cut(s) 263, 926, 1326
ScrFI CCNGG 1 cut(s) 544
SduI GDGCHC 3 cut(s) 790, 1116, 1206
SfaNI GCATC 4 cut(s) 622, 1290, 1378, 1433
SinI GGWCC 4 cut(s) 95, 540, 1599, 1626
SmiMI CAYNNNNRTG 3 cut(s) 60, 828, 1190
SphI GCATGC 2 cut(s) 642, 1307
Sse9I AATT 7 cut(s) 592, 682, 986, 1146, 1239, 1417, 1453
SsiI CCGC 2 cut(s) 1156, 1315
SspI AATATT 2 cut(s) 812, 1248
SspMI CTAG 4 cut(s) 920, 1286, 1385, 1604
StyD4I CCNGG 1 cut(s) 542
StyI CCWWGG 1 cut(s) 1262
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 4 cut(s) 457, 487, 1330, 1521
TasI AATT 7 cut(s) 592, 682, 986, 1146, 1239, 1417, 1453
TatI WGTACW 1 cut(s) 525
TauI GCSGC 2 cut(s) 1159, 1318
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 2 cut(s) 1320, 1509
Tru9I TTAA 2 cut(s) 1320, 1509
TscAI CASTG 1 cut(s) 1581
TseFI GTSAC 1 cut(s) 1231
TseI GCWGC 3 cut(s) 852, 1018, 1312
Tsp45I GTSAC 1 cut(s) 1231
TspDTI ATGAA 9 cut(s) 150, 243, 477, 840, 1008, 1022, 1074, 1308, 1446
TspGWI ACGGA 3 cut(s) 483, 1202, 1566
TspRI CASTG 1 cut(s) 1581
Tth111I GACNNNGTC 2 cut(s) 1276, 1335
Van91I CCANNNNNTGG 2 cut(s) 1166, 1544
VpaK11BI GGWCC 4 cut(s) 95, 540, 1599, 1626
XagI CCTNNNNNAGG 1 cut(s) 1124
XapI RAATTY 2 cut(s) 986, 1417
XbaI TCTAGA 1 cut(s) 919
XceI RCATGY 4 cut(s) 642, 1099, 1307, 1381
XspI CTAG 4 cut(s) 920, 1286, 1385, 1604
Zsp2I ATGCAT 4 cut(s) 478, 607, 1305, 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.