Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006851

Physical Location & Seq

Genomic Coordinates Forward (+)

44742385 .. 44743900

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0295000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAAGGTTTCAAGGATCTCTAGCCTTTGGAGAATGCAGTTTTTGAAGTTGGGGAGGAGAATTGCCAGCTCCAGGCCTGCAGTCACACTTGGTAGTGTTGAAACAGGAGCATCATTTGGTTTTTTCAGCGGATCTCATCTTTTGGGGCAGCTGATTCGGAAGTTGAAGTCACAATGCAAACAAGCTTTCGGGCGGCAAAAGAGCTACGCCCAGTTCAGCTATGATATTCATAGCTATTCTCTCAACTTCGACAATGGTTTCGATGATCATGTCTCACCTCATAGCTTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008285 GO:0009653 GO:0009791 GO:0009908 GO:0010154 GO:0016787 GO:0019538 GO:0022414 GO:0032182 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0042127 GO:0043130 GO:0043170 GO:0044238 GO:0045926 GO:0046620 GO:0046621 GO:0048316 GO:0048317 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1905392 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM UIM

Protein Analysis

97

Amino Acids

11.01

Weight (kDa)

10.49

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19270 AT1G19270
fragaria_vesca	FvH4_2g40390 FvH4_2g40390 FvH4_2g40390 FvH4_2g40390
malus_domestica	MD00G1039600.v1.1 MD08G1037200.v1.1
prunus_persica	Prupe.1G384500_v2.0.a1 Prupe.1G384500_v2.0.a1 Prupe.1G384500_v2.0.a1
pyrus_communis	pycom08g02960 pycom15g02890
rosa_chinensis	RchiOBHm_Chr6g0300341
rosa_laevigata	RLG00000011346
rosa_multiflora	Rmu_sc0001670.1_g000021
rosa_roxburghii	Rroxscaffold_7G00167880
rosa_rugosa	Rorug06G0295000 Rorug06G0295100 Rorug06G0295200 Rorug06G0295200
rosa_samantha	Rh6AG407900 Rh6BG415200 Rh6CG422600 Rh6DG408200
rosa_wichuraiana	Rw6G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	129, 193
AclWI	GGATC	2 cut(s)	23, 139
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	4 cut(s)	12, 46, 101, 166
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	7 cut(s)	69, 151, 185, 204, 219, 234, 285
AluI	AGCT	7 cut(s)	69, 151, 185, 204, 219, 234, 285
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	2 cut(s)	23, 139
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	148
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AsuHPI	GGTGA	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	73
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	78
BisI	GCNGC	2 cut(s)	149, 194
BlsI	GCNGC	2 cut(s)	150, 195
Bme1390I	CCNGG	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	73
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	119
BmuI	ACTGGG	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	76
Bsp143I	GATC	3 cut(s)	15, 131, 265
BspACI	CCGC	2 cut(s)	129, 193
BspANI	GGCC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	2 cut(s)	23, 139
BsrI	ACTGG	1 cut(s)	211
BssMI	GATC	3 cut(s)	15, 131, 265
Bst2UI	CCWGG	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	67, 78
BstKTI	GATC	3 cut(s)	18, 134, 268
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	3 cut(s)	15, 131, 265
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	2 cut(s)	15, 131
BstYI	RGATCY	2 cut(s)	15, 131
BsuRI	GGCC	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	67, 78
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	9 cut(s)	24, 69, 76, 151, 185, 204, 219, 234, 285
CviKI_1	RGCY	9 cut(s)	24, 69, 76, 151, 185, 204, 219, 234, 285
DpnI	GATC	3 cut(s)	17, 133, 267
DpnII	GATC	3 cut(s)	15, 131, 265
Eco147I	AGGCCT	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	71
FaeI	CATG	1 cut(s)	272
FaiI	YATR	4 cut(s)	222, 231, 270, 282
FatI	CATG	1 cut(s)	268
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	149, 194
Fsp4HI	GCNGC	2 cut(s)	149, 194
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	2 cut(s)	149, 194
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	289
Hin1II	CATG	1 cut(s)	272
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	37, 80, 177
Hsp92II	CATG	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	15, 131, 265
LmnI	GCTCC	2 cut(s)	74, 107
LpnPI	CCDG	6 cut(s)	58, 79, 85, 90, 90, 224
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	82, 168
MalI	GATC	3 cut(s)	17, 133, 267
MboI	GATC	3 cut(s)	15, 131, 265
MflI	RGATCY	2 cut(s)	15, 131
MluCI	AATT	1 cut(s)	60
MnlI	CCTC	2 cut(s)	48, 288
MspA1I	CMGCKG	2 cut(s)	129, 151
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	73
Mva1269I	GAATGC	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	73
NdeII	GATC	3 cut(s)	15, 131, 265
NlaIII	CATG	1 cut(s)	272
NmuCI	GTSAC	2 cut(s)	82, 168
PceI	AGGCCT	1 cut(s)	76
PctI	GAATGC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	150, 195
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	15, 131
PvuII	CAGCTG	1 cut(s)	151
SatI	GCNGC	2 cut(s)	149, 194
Sau3AI	GATC	3 cut(s)	15, 131, 265
ScrFI	CCNGG	1 cut(s)	73
SetI	ASST	9 cut(s)	9, 71, 153, 187, 206, 221, 236, 280, 287
SfaNI	GCATC	1 cut(s)	119
SfcI	CTRYAG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	60
SseBI	AGGCCT	1 cut(s)	76
SsiI	CCGC	2 cut(s)	129, 193
SspMI	CTAG	1 cut(s)	21
StuI	AGGCCT	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	71
TaqI	TCGA	2 cut(s)	249, 261
TasI	AATT	1 cut(s)	60
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	154
TseFI	GTSAC	2 cut(s)	82, 168
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	2 cut(s)	82, 168
TspDTI	ATGAA	2 cut(s)	17, 218
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.