AT1G19330

Sin3 binding region of histone deacetylase complex subunit SAP30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008660
Physical Location & Seq
Reverse (-)
6680423 .. 6683559
3137 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19330.1

Sequence Viewer

Length: 744 bp
ATGCTGGAAGCTGTAGATAGCTCAGGAGTGGTGAATGGAGGATTCCCGCAGATTCAGAGCTTTTACGGCGATTGCAGTAGTGAAGAAGAGTTATCGGTATTGCCACGTCATACAAAAGTGGTGGTCACCGGAAACAACCGGACGAAATCGGTGCTTGTTGGTCTTCAAGGTGTTGTCAAAAAAGCTGTCGGTCTCGGTGGTTGGCATTGGCTGGTTTTGACAAATGGAATAGAAGTAAAGTTGCAGAGGAATGCGCTTAGTGTCCTTGAACCTCCTACTGGAAACGAAGAAGACGATGATCTTGATTTCGAAAACACACAGAGGAATGGCTCTGATATGATTGTTTCTTTTCCAGCATCTGAGGACACACTGAAGCCTCATAAGTCGAAGCTAAGAGGGCAGAGATCATCTCGGTCATCTCACAAGACGATGAGCAGGTCTCTATCATCTGACTCGCAATCAAAAAGTTCGGGTTTTACTCCTCCTGAAAACATGAAGGTTGATCTTAGCAAATTGGAAATGCCTGCTTTACTGAATTATTGGCGACATTTTAACCTTGTGGATGCAATTCCAAATCCATCAAAGGAGCAACTAATTGACATTGTTCAAAGGCACTTCATGTCTCAGCAAATGGATGAGCTTCAGGTTATTGTGGGGTTTGTCCAAGCTGCAAAGAGAATGAAGAAGGCTTGCAAGTTTCAATCCAAAGAATCCAGAAACACTGATCTTAACTGCATCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAP30_Sin3_bdg

Protein Analysis

247

Amino Acids

27.46

Weight (kDa)

7.74

Isoelectric Point (pI)

57.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP30_Sin3_bdg PF13867 172 - 225 1.8e-18 Sin3 binding region of histone deacetylase complex subunit SAP30
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 426
AciI CCGC 1 cut(s) 47
AcuI CTGAAG 2 cut(s) 392, 626
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 4 cut(s) 167, 269, 608, 701
AjiI CACGTC 1 cut(s) 107
AluBI AGCT 8 cut(s) 11, 21, 60, 185, 391, 640, 668, 741
AluI AGCT 8 cut(s) 11, 21, 60, 185, 391, 640, 668, 741
Alw26I GTCTC 3 cut(s) 197, 444, 627
AlwNI CAGNNNCTG 1 cut(s) 359
ApeKI GCWGC 1 cut(s) 668
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspLEI GCGC 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 43, 118
AsuII TTCGAA 1 cut(s) 309
BbsI GAAGAC 2 cut(s) 155, 297
BbvI GCAGC 1 cut(s) 655
BccI CCATC 1 cut(s) 586
BceAI ACGGC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BcoDI GTCTC 3 cut(s) 197, 444, 627
BfmI CTRYAG 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 426
BisI GCNGC 1 cut(s) 669
BlsI GCNGC 1 cut(s) 670
BmgBI CACGTC 1 cut(s) 107
BmsI GCATC 2 cut(s) 365, 553
BpiI GAAGAC 2 cut(s) 155, 297
BplI GAGNNNNNCTC 4 cut(s) 394, 426, 424, 456
Bpu10I CCTNAGC 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 309
BsaI GGTCTC 2 cut(s) 197, 444
BsaWI WCCGGW 2 cut(s) 128, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 283
BseGI GGATG 2 cut(s) 568, 640
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMII CTCAG 3 cut(s) 36, 351, 638
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 1 cut(s) 655
BsiSI CCGG 2 cut(s) 129, 139
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 3 cut(s) 197, 444, 627
BsmI GAATGC 1 cut(s) 256
Bso31I GGTCTC 2 cut(s) 197, 444
Bsp119I TTCGAA 1 cut(s) 309
Bsp143I GATC 4 cut(s) 298, 404, 502, 724
BspACI CCGC 1 cut(s) 47
BspCNI CTCAG 3 cut(s) 35, 352, 637
BspMI ACCTGC 1 cut(s) 426
BspT104I TTCGAA 1 cut(s) 309
BspTNI GGTCTC 2 cut(s) 197, 444
BsrI ACTGG 1 cut(s) 283
BssMI GATC 4 cut(s) 298, 404, 502, 724
Bst6I CTCTTC 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 525, 691
BstDEI CTNAG 6 cut(s) 22, 257, 360, 392, 506, 624
BstEII GGTNACC 1 cut(s) 124
BstF5I GGATG 2 cut(s) 568, 640
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 4 cut(s) 301, 407, 505, 727
BstMAI GTCTC 3 cut(s) 197, 444, 627
BstMBI GATC 4 cut(s) 298, 404, 502, 724
BstMWI GCNNNNNNNGC 2 cut(s) 66, 397
BstPI GGTNACC 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 655
BstV2I GAAGAC 2 cut(s) 155, 297
BtrI CACGTC 1 cut(s) 107
BtsCI GGATG 2 cut(s) 568, 640
BtsIMutI CAGTG 2 cut(s) 368, 720
BveI ACCTGC 1 cut(s) 426
Cac8I GCNNGC 2 cut(s) 525, 691
CaiI CAGNNNCTG 1 cut(s) 359
CfoI GCGC 1 cut(s) 256
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 2 cut(s) 493, 619
DdeI CTNAG 6 cut(s) 22, 257, 360, 392, 506, 624
DpnI GATC 4 cut(s) 300, 406, 504, 726
DpnII GATC 4 cut(s) 298, 404, 502, 724
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco31I GGTCTC 2 cut(s) 197, 444
Eco57I CTGAAG 2 cut(s) 392, 626
Eco91I GGTNACC 1 cut(s) 124
EcoO65I GGTNACC 1 cut(s) 124
FaeI CATG 2 cut(s) 496, 622
FaiI YATR 5 cut(s) 111, 338, 381, 494, 620
FatI CATG 2 cut(s) 492, 618
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 669
FokI GGATG 2 cut(s) 575, 647
Fsp4HI GCNGC 1 cut(s) 669
GlaI GCGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 669
HapII CCGG 2 cut(s) 129, 139
HhaI GCGC 1 cut(s) 256
Hin1II CATG 2 cut(s) 496, 622
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 4 cut(s) 42, 52, 452, 710
HpaII CCGG 2 cut(s) 129, 139
HphI GGTGA 2 cut(s) 43, 118
Hpy188I TCNGA 4 cut(s) 57, 334, 361, 451
Hpy188III TCNNGA 4 cut(s) 24, 302, 485, 714
HpyAV CCTTC 2 cut(s) 490, 679
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 6 cut(s) 75, 244, 566, 671, 693, 735
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 397
HpyF3I CTNAG 6 cut(s) 22, 257, 360, 392, 506, 624
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 2 cut(s) 496, 622
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 4 cut(s) 298, 404, 502, 724
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 1 cut(s) 655
LweI GCATC 2 cut(s) 365, 553
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 124
MalI GATC 4 cut(s) 300, 406, 504, 726
MboI GATC 4 cut(s) 298, 404, 502, 724
MboII GAAGA 6 cut(s) 95, 98, 155, 299, 302, 694
MluCI AATT 4 cut(s) 512, 535, 567, 594
MlyI GAGTC 1 cut(s) 446
MnlI CCTC 8 cut(s) 32, 240, 282, 315, 355, 387, 389, 492
MseI TTAA 2 cut(s) 552, 729
MspI CCGG 2 cut(s) 129, 139
Mva1269I GAATGC 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 66, 397
NdeII GATC 4 cut(s) 298, 404, 502, 724
NlaIII CATG 2 cut(s) 496, 622
NmuCI GTSAC 1 cut(s) 124
NspV TTCGAA 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 3 cut(s) 42, 52, 710
PkrI GCNGC 1 cut(s) 670
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PspEI GGTNACC 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 359
SaqAI TTAA 2 cut(s) 552, 729
SatI GCNGC 1 cut(s) 669
Sau3AI GATC 4 cut(s) 298, 404, 502, 724
SchI GAGTC 1 cut(s) 446
SfaNI GCATC 2 cut(s) 365, 553
SfcI CTRYAG 1 cut(s) 12
SfuI TTCGAA 1 cut(s) 309
Sse9I AATT 4 cut(s) 512, 535, 567, 594
SsiI CCGC 1 cut(s) 47
TaiI ACGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 309, 386
TaqII GACCGA 2 cut(s) 179, 402
TasI AATT 4 cut(s) 512, 535, 567, 594
TfiI GAWTC 3 cut(s) 42, 52, 710
Tru1I TTAA 2 cut(s) 552, 729
Tru9I TTAA 2 cut(s) 552, 729
TscAI CASTG 2 cut(s) 375, 727
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 668
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 509, 607, 695
TspRI CASTG 2 cut(s) 375, 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.