AT1G75060

Sin3 binding region of histone deacetylase complex subunit SAP30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008660
Physical Location & Seq
Reverse (-)
28181275 .. 28183517
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75060.1

Sequence Viewer

Length: 729 bp
ATGCTGGAAGCTCCGGTGAACAAGTCAAGCATCCTCAATGGAGGAGGAGGAGGATTCTCTCAGCTACAGAGTTGCTTCGGCGATTGCAGTAGCGAAGAAGAATTGTCAGTGTTGCCACGTCATACCAAAGTTGTCGTTACTGGAAACAACCGTACCAAATCTGTTCTCGTCGGTCTTCAAGGCGTCGTTAAGAAAGCCGTCGGACTCGGTGGTTGGCATTGGCTGGTTTTGACTAATGGAATTGAAGTGAAGTTGCAGAGGAATGCGCTTAGTGTTCTTGAACATCCTACAGGGAACGAAGAAGACAATGATCTTGAAGTCGACCATTCTACACAGTGGAATCATCCCTCCGATATGACAACTGAGGACACTTTGAAGCCTCATAAGTCGAAGAAGAGAGGACACAGATCATCGCGGTTATCTCAAAAGGCTTTGTACAGGGAAGTTTCTTGTGACTCACACTCAAAAATCTCGAGTATTACTCCTCGTCTGAACATGAAGGTTGATCTTACCAAGTTGGATATGGCTGCATTACTGAGATATTGGCGACATTTTAACCTCGTGGATGCTCTTCCGAATCCCACAAAGGAGCAACTAATTGACATTATTCAGAGACACTTCATGTCTCAGCAAATGGATGAGCTTCAGGTTATTGTGGGATTCGTTCAGGCTGCAACAGGAATGAAGAAGGCTTGCCAAGTGGAAGACCAAAGAAGCCAGAAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAP30_Sin3_bdg

Protein Analysis

242

Amino Acids

27.06

Weight (kDa)

8.64

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP30_Sin3_bdg PF13867 173 - 225 4.1e-19 Sin3 binding region of histone deacetylase complex subunit SAP30
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 321
AccII CGCG 1 cut(s) 415
AciI CCGC 1 cut(s) 415
AcuI CTGAAG 1 cut(s) 629
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 154, 437
AgsI TTSAA 5 cut(s) 179, 245, 281, 317, 376
AjiI CACGTC 1 cut(s) 119
AluBI AGCT 3 cut(s) 11, 64, 643
AluI AGCT 3 cut(s) 11, 64, 643
Alw26I GTCTC 2 cut(s) 607, 630
Ama87I CYCGRG 1 cut(s) 472
ApeKI GCWGC 2 cut(s) 527, 671
AspLEI GCGC 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 472
BaeI ACNNNNGTAYC 2 cut(s) 136, 169
BauI CACGAG 1 cut(s) 560
BbsI GAAGAC 3 cut(s) 167, 309, 711
BbvI GCAGC 2 cut(s) 514, 658
BceAI ACGGC 1 cut(s) 182
BcoDI GTCTC 2 cut(s) 607, 630
BfmI CTRYAG 2 cut(s) 65, 288
BisI GCNGC 2 cut(s) 528, 672
BlsI GCNGC 2 cut(s) 529, 673
BmeT110I CYCGRG 1 cut(s) 472
BmgBI CACGTC 1 cut(s) 119
BmsI GCATC 2 cut(s) 39, 556
BpiI GAAGAC 3 cut(s) 167, 309, 711
BplI GAGNNNNNCTC 2 cut(s) 466, 498
BsaHI GRCGYC 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 145
BseGI GGATG 5 cut(s) 30, 283, 343, 571, 643
BseMII CTCAG 4 cut(s) 74, 354, 527, 641
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 4 cut(s) 57, 60, 63, 474
BseXI GCAGC 2 cut(s) 514, 658
Bsh1236I CGCG 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 1 cut(s) 14
BsmAI GTCTC 2 cut(s) 607, 630
BsmI GAATGC 1 cut(s) 268
BsoBI CYCGRG 1 cut(s) 472
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 3 cut(s) 310, 407, 505
BspACI CCGC 1 cut(s) 415
BspCNI CTCAG 4 cut(s) 73, 355, 528, 640
BspFNI CGCG 1 cut(s) 415
BspQI GCTCTTC 1 cut(s) 576
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 1 cut(s) 145
BssMI GATC 3 cut(s) 310, 407, 505
BssNI GRCGYC 1 cut(s) 183
BssSI CACGAG 1 cut(s) 560
Bst2BI CACGAG 1 cut(s) 560
Bst4CI ACNGT 2 cut(s) 152, 336
Bst6I CTCTTC 2 cut(s) 389, 576
BstACI GRCGYC 1 cut(s) 183
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 694
BstDEI CTNAG 5 cut(s) 60, 269, 363, 536, 627
BstF5I GGATG 5 cut(s) 30, 283, 343, 571, 643
BstFNI CGCG 1 cut(s) 415
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 3 cut(s) 313, 410, 508
BstMAI GTCTC 2 cut(s) 607, 630
BstMBI GATC 3 cut(s) 310, 407, 505
BstSFI CTRYAG 2 cut(s) 65, 288
BstUI CGCG 1 cut(s) 415
BstV1I GCAGC 2 cut(s) 514, 658
BstV2I GAAGAC 3 cut(s) 167, 309, 711
BtgZI GCGATG 1 cut(s) 396
BtrI CACGTC 1 cut(s) 119
BtsCI GGATG 5 cut(s) 30, 283, 343, 571, 643
BtsIMutI CAGTG 3 cut(s) 114, 341, 724
Cac8I GCNNGC 1 cut(s) 694
CfoI GCGC 1 cut(s) 268
CseI GACGC 1 cut(s) 172
Csp6I GTAC 2 cut(s) 153, 436
CviAII CATG 2 cut(s) 496, 622
CviQI GTAC 2 cut(s) 153, 436
DdeI CTNAG 5 cut(s) 60, 269, 363, 536, 627
DpnI GATC 3 cut(s) 312, 409, 507
DpnII GATC 3 cut(s) 310, 407, 505
Eam1104I CTCTTC 2 cut(s) 389, 576
EarI CTCTTC 2 cut(s) 389, 576
Eco57I CTGAAG 1 cut(s) 629
Eco88I CYCGRG 1 cut(s) 472
FaeI CATG 2 cut(s) 499, 625
FaiI YATR 6 cut(s) 123, 356, 384, 497, 524, 623
FatI CATG 2 cut(s) 495, 621
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 528, 672
FokI GGATG 5 cut(s) 17, 270, 330, 578, 650
Fsp4HI GCNGC 2 cut(s) 528, 672
GlaI GCGC 1 cut(s) 267
GluI GCNGC 2 cut(s) 528, 672
HapII CCGG 1 cut(s) 14
HgaI GACGC 1 cut(s) 172
HhaI GCGC 1 cut(s) 268
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 2 cut(s) 499, 625
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 6 cut(s) 54, 204, 340, 455, 577, 660
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 19, 322
Hpy188I TCNGA 5 cut(s) 203, 352, 492, 576, 612
Hpy188III TCNNGA 3 cut(s) 278, 314, 472
Hpy8I GTNNAC 2 cut(s) 19, 322
Hpy99I CGWCG 3 cut(s) 173, 188, 203
HpyAV CCTTC 2 cut(s) 493, 682
HpyCH4III ACNGT 2 cut(s) 152, 336
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 4 cut(s) 87, 256, 530, 674
HpyF3I CTNAG 5 cut(s) 60, 269, 363, 536, 627
HpySE526I ACGT 1 cut(s) 118
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 2 cut(s) 499, 625
HspAI GCGC 1 cut(s) 266
Kzo9I GATC 3 cut(s) 310, 407, 505
LguI GCTCTTC 1 cut(s) 576
LmnI GCTCC 2 cut(s) 16, 589
LpnPI CCDG 8 cut(s) 27, 126, 209, 276, 424, 632, 653, 663
Lsp1109I GCAGC 2 cut(s) 514, 658
LweI GCATC 2 cut(s) 39, 556
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 2 cut(s) 136, 452
MalI GATC 3 cut(s) 312, 409, 507
MboI GATC 3 cut(s) 310, 407, 505
MluCI AATT 3 cut(s) 101, 240, 597
MlyI GAGTC 2 cut(s) 198, 449
MmeI TCCRAC 2 cut(s) 181, 498
MseI TTAA 2 cut(s) 189, 555
MspI CCGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 268
MvnI CGCG 1 cut(s) 415
NdeII GATC 3 cut(s) 310, 407, 505
NlaIII CATG 2 cut(s) 499, 625
NmuCI GTSAC 1 cut(s) 452
PaeR7I CTCGAG 1 cut(s) 472
PciSI GCTCTTC 1 cut(s) 576
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 4 cut(s) 54, 340, 577, 660
PkrI GCNGC 2 cut(s) 529, 673
PleI GAGTC 2 cut(s) 198, 449
PpsI GAGTC 2 cut(s) 198, 449
RsaI GTAC 2 cut(s) 154, 437
RsaNI GTAC 2 cut(s) 153, 436
SalI GTCGAC 1 cut(s) 320
SapI GCTCTTC 1 cut(s) 576
SaqAI TTAA 2 cut(s) 189, 555
SatI GCNGC 2 cut(s) 528, 672
Sau3AI GATC 3 cut(s) 310, 407, 505
SchI GAGTC 2 cut(s) 198, 449
SetI ASST 7 cut(s) 13, 66, 121, 504, 561, 645, 651
SfaNI GCATC 2 cut(s) 39, 556
SfcI CTRYAG 2 cut(s) 65, 288
Sfr274I CTCGAG 1 cut(s) 472
SlaI CTCGAG 1 cut(s) 472
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
Sse9I AATT 3 cut(s) 101, 240, 597
SsiI CCGC 1 cut(s) 415
TaaI ACNGT 2 cut(s) 152, 336
TaiI ACGT 1 cut(s) 121
TaqI TCGA 3 cut(s) 321, 389, 473
TaqII GACCGA 1 cut(s) 161
TasI AATT 3 cut(s) 101, 240, 597
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 4 cut(s) 54, 340, 577, 660
Tru1I TTAA 2 cut(s) 189, 555
Tru9I TTAA 2 cut(s) 189, 555
TscAI CASTG 2 cut(s) 114, 341
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 2 cut(s) 527, 671
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 3 cut(s) 512, 610, 698
TspRI CASTG 2 cut(s) 114, 341
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
XhoI CTCGAG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.