Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008660

Physical Location & Seq

Genomic Coordinates Reverse (-)

60629432 .. 60632876

Gene Structure 3445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG409300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCTTCATGCAATGGAGAGCTCCGTCAACAATGGCGGTTTCTCGCAGTTTCAGAGCTGCGGCGACAGTAGCGAAGAGGAGCTCTCGGTGCTGCCACGTCACACCAAGGTGGTGGTTACCGGCAATAACAGAACCAAGTCCGTTCTCGTTGGTCTCCAAGGCGTCGTAAAGAAGGCCGTAGGGTTAGGCGGATGGCATTGGCTGGTCCTTACAAATGGCATAGAAGTAAAGCTTCAGAGGAATGCCCTTAGTGTAATTGAAGCTCCTACTGGTAATGAGGATGATGATGACCTTGATTTTGAGACTGTCCAGTGGAATGGATCAGACATGGCATCCGATGATACCCAAAAATCTCAAAGATCAAGGCATAGAGTGCATAAATCATGTGGATCATCTCACAAGACTACATGCAGATCTTTCTCTTGTGACTCACAATCTAAGGGCTCTGTTTCTACTCCGCGAGGGTCAGGATCAACAAAAATTGACCTTGGGAAACTGGAGATGGCTGCTCTATGGAGATATTGGCGTCATTTCAATCTTGTGAGTACTCAAAACTTAACAGGTGTACCTGCCGAGATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP30_Sin3_bdg

Protein Analysis

194

Amino Acids

21.22

Weight (kDa)

6.65

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19330 AT1G19330 AT1G19330 AT1G75060 AT1G75060 AT1G75060
fragaria_vesca	FvH4_2g40250 FvH4_2g40250
malus_domestica	MD15G1032300.v1.1
prunus_persica	Prupe.1G383300_v2.0.a1
pyrus_communis	pycom15g02800
rosa_chinensis	RchiOBHm_Chr6g0300511
rosa_laevigata	RLG00000011328
rosa_multiflora	Rmu_sc0001476.1_g000018 Rmu_sc0006386.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167710
rosa_rugosa	Rorug06G0296600 Rorug06G0296600
rosa_samantha	Rh6AG409300 Rh6BG416500 Rh6CG424200 Rh6DG409800
rosa_wichuraiana	Rw6G035810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	577
AccII	CGCG	1 cut(s)	460
AciI	CCGC	4 cut(s)	36, 60, 189, 458
AclWI	GGATC	3 cut(s)	328, 397, 478
AcuI	CTGAAG	1 cut(s)	218
AcyI	GRCGYC	2 cut(s)	162, 526
AfaI	GTAC	2 cut(s)	547, 567
AgsI	TTSAA	3 cut(s)	260, 535, 581
AjiI	CACGTC	1 cut(s)	98
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	5 cut(s)	21, 57, 82, 232, 263
AluI	AGCT	5 cut(s)	21, 57, 82, 232, 263
Alw21I	GWGCWC	2 cut(s)	23, 84
Alw26I	GTCTC	2 cut(s)	158, 296
AlwI	GGATC	3 cut(s)	328, 397, 478
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	3 cut(s)	57, 91, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspS9I	GGNCC	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	205
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BanII	GRGCYC	3 cut(s)	23, 84, 446
Bbv12I	GWGCWC	2 cut(s)	23, 84
BbvI	GCAGC	3 cut(s)	44, 78, 493
BccI	CCATC	2 cut(s)	186, 496
BceAI	ACGGC	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	158, 296
BfuAI	ACCTGC	1 cut(s)	577
BglII	AGATCT	1 cut(s)	413
BisI	GCNGC	4 cut(s)	58, 61, 92, 507
BlsI	GCNGC	4 cut(s)	59, 62, 93, 508
BmcAI	AGTACT	1 cut(s)	547
Bme18I	GGWCC	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	205
BmsI	GCATC	1 cut(s)	341
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	518
BsaHI	GRCGYC	2 cut(s)	162, 526
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	105, 157, 487
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	3 cut(s)	274, 310, 501
Bse3DI	GCAATG	1 cut(s)	18
BseDI	CCNNGG	3 cut(s)	105, 157, 487
BseGI	GGATG	3 cut(s)	197, 286, 332
BseMI	GCAATG	1 cut(s)	18
BseNI	ACTGG	3 cut(s)	274, 310, 501
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	44, 78, 493
Bsh1236I	CGCG	1 cut(s)	460
BshFI	GGCC	1 cut(s)	176
BsiHKAI	GWGCWC	2 cut(s)	23, 84
BsiSI	CCGG	1 cut(s)	120
BsmAI	GTCTC	2 cut(s)	158, 296
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	3 cut(s)	23, 84, 446
Bsp143I	GATC	5 cut(s)	320, 359, 389, 413, 470
BspACI	CCGC	4 cut(s)	36, 60, 189, 458
BspANI	GGCC	1 cut(s)	176
BspFNI	CGCG	1 cut(s)	460
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	3 cut(s)	328, 397, 478
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	3 cut(s)	274, 310, 501
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	105, 157, 487
BssMI	GATC	5 cut(s)	320, 359, 389, 413, 470
BssNI	GRCGYC	2 cut(s)	162, 526
BssT1I	CCWWGG	3 cut(s)	105, 157, 487
Bst4CI	ACNGT	2 cut(s)	68, 307
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	2 cut(s)	162, 526
BstAPI	GCANNNNNTGC	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	248, 438
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	197, 286, 332
BstFNI	CGCG	1 cut(s)	460
BstKTI	GATC	5 cut(s)	323, 362, 392, 416, 473
BstMAI	GTCTC	2 cut(s)	158, 296
BstMBI	GATC	5 cut(s)	320, 359, 389, 413, 470
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 88, 373
BstNSI	RCATGY	1 cut(s)	411
BstPI	GGTNACC	1 cut(s)	115
BstUI	CGCG	1 cut(s)	460
BstV1I	GCAGC	3 cut(s)	44, 78, 493
BstX2I	RGATCY	1 cut(s)	413
BstXI	CCANNNNNNTGG	2 cut(s)	112, 317
BstYI	RGATCY	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	176
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	3 cut(s)	197, 286, 332
BtsIMutI	CAGTG	1 cut(s)	317
BveI	ACCTGC	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	2 cut(s)	151, 515
Csp6I	GTAC	2 cut(s)	546, 566
CviAII	CATG	4 cut(s)	8, 328, 384, 408
CviJI	RGCY	9 cut(s)	21, 57, 82, 176, 202, 232, 263, 444, 506
CviKI_1	RGCY	9 cut(s)	21, 57, 82, 176, 202, 232, 263, 444, 506
CviQI	GTAC	2 cut(s)	546, 566
DdeI	CTNAG	2 cut(s)	248, 438
DpnI	GATC	5 cut(s)	322, 361, 391, 415, 472
DpnII	GATC	5 cut(s)	320, 359, 389, 413, 470
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	204
Ecl136II	GAGCTC	2 cut(s)	21, 82
Eco130I	CCWWGG	3 cut(s)	105, 157, 487
Eco24I	GRGCYC	3 cut(s)	23, 84, 446
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	205
Eco53kI	GAGCTC	2 cut(s)	21, 82
Eco57I	CTGAAG	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	115
EcoICRI	GAGCTC	2 cut(s)	21, 82
EcoO65I	GGTNACC	1 cut(s)	115
EcoT14I	CCWWGG	3 cut(s)	105, 157, 487
EcoT38I	GRGCYC	3 cut(s)	23, 84, 446
ErhI	CCWWGG	3 cut(s)	105, 157, 487
FaeI	CATG	4 cut(s)	11, 331, 387, 411
FaiI	YATR	8 cut(s)	9, 221, 329, 369, 378, 385, 409, 514
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	4 cut(s)	7, 327, 383, 407
Fnu4HI	GCNGC	4 cut(s)	58, 61, 92, 507
FokI	GGATG	3 cut(s)	204, 293, 319
FriOI	GRGCYC	3 cut(s)	23, 84, 446
Fsp4HI	GCNGC	4 cut(s)	58, 61, 92, 507
GluI	GCNGC	4 cut(s)	58, 61, 92, 507
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	1 cut(s)	120
HgaI	GACGC	2 cut(s)	151, 515
Hin1I	GRCGYC	2 cut(s)	162, 526
Hin1II	CATG	4 cut(s)	11, 331, 387, 411
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	1 cut(s)	120
Hpy166II	GTNNAC	2 cut(s)	28, 566
Hpy188I	TCNGA	4 cut(s)	54, 237, 325, 337
Hpy188III	TCNNGA	1 cut(s)	468
Hpy8I	GTNNAC	2 cut(s)	28, 566
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	68, 307
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	3 cut(s)	11, 376, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 88, 373
HpyF3I	CTNAG	2 cut(s)	248, 438
HpySE526I	ACGT	1 cut(s)	97
Hsp92I	GRCGYC	2 cut(s)	162, 526
Hsp92II	CATG	4 cut(s)	11, 331, 387, 411
Kzo9I	GATC	5 cut(s)	320, 359, 389, 413, 470
LmnI	GCTCC	3 cut(s)	26, 79, 268
LpnPI	CCDG	7 cut(s)	133, 188, 255, 323, 453, 482, 546
Lsp1109I	GCAGC	3 cut(s)	44, 78, 493
LweI	GCATC	1 cut(s)	341
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	3 cut(s)	98, 115, 425
MalI	GATC	5 cut(s)	322, 361, 391, 415, 472
MboI	GATC	5 cut(s)	320, 359, 389, 413, 470
MboII	GAAGA	1 cut(s)	86
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	3 cut(s)	23, 84, 446
MluCI	AATT	2 cut(s)	255, 480
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	4 cut(s)	70, 231, 271, 455
MseI	TTAA	1 cut(s)	557
MslI	CAYNNNNRTG	1 cut(s)	107
MspI	CCGG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	247
MvnI	CGCG	1 cut(s)	460
MwoI	GCNNNNNNNGC	3 cut(s)	69, 88, 373
NdeII	GATC	5 cut(s)	320, 359, 389, 413, 470
NlaIII	CATG	4 cut(s)	11, 331, 387, 411
NmuCI	GTSAC	2 cut(s)	98, 425
NspI	RCATGY	1 cut(s)	411
OliI	CACNNNNGTG	1 cut(s)	107
PctI	GAATGC	1 cut(s)	247
PkrI	GCNGC	4 cut(s)	59, 62, 93, 508
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
Psp124BI	GAGCTC	2 cut(s)	23, 84
PspEI	GGTNACC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	413
RsaI	GTAC	2 cut(s)	547, 567
RsaNI	GTAC	2 cut(s)	546, 566
RseI	CAYNNNNRTG	1 cut(s)	107
SacI	GAGCTC	2 cut(s)	23, 84
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	4 cut(s)	58, 61, 92, 507
Sau3AI	GATC	5 cut(s)	320, 359, 389, 413, 470
Sau96I	GGNCC	1 cut(s)	205
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	1 cut(s)	422
SduI	GDGCHC	3 cut(s)	23, 84, 446
SfaNI	GCATC	1 cut(s)	341
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	255, 480
SsiI	CCGC	4 cut(s)	36, 60, 189, 458
SstI	GAGCTC	2 cut(s)	23, 84
StyI	CCWWGG	3 cut(s)	105, 157, 487
TaaI	ACNGT	2 cut(s)	68, 307
TaiI	ACGT	1 cut(s)	100
TasI	AATT	2 cut(s)	255, 480
TatI	WGTACW	1 cut(s)	545
TauI	GCSGC	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	1 cut(s)	317
TseFI	GTSAC	2 cut(s)	98, 425
TseI	GCWGC	3 cut(s)	57, 91, 506
Tsp45I	GTSAC	2 cut(s)	98, 425
TspGWI	ACGGA	2 cut(s)	13, 130
TspRI	CASTG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	205
XceI	RCATGY	1 cut(s)	411
ZrmI	AGTACT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.