Rorug06G0296600
NAC Family

Sin3 binding region of histone deacetylase complex subunit SAP30

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
44961194 .. 44963848
2655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0296600.1

Sequence Viewer

Length: 1368 bp
ATGGGTTGCTTTCTTGCATGTTTTGGTTCTTCCAAAGATAAAAGCCGCAGGAATCAACAGAGGTACAGGGTTCAGCACCGAGAACAAAGATATACAAGTTTTGAGCCTGTTCAATCTGCTGTGTCTTCTGTGCCGGTTTGGGAAAACCCCATTAGCCCTGAATTGAAATATGAAAAACCCATCAGCCCAGAATTGAAAGATGAAAAACCCATCAGCGTGGAATTGAAGGAAGAAAAACCCCGTAGCCCAGAATTGGAAGAAGTTAGGGATAAGCCGGTGGATCAACTGAGCTTCATTACTAGAAAGAAAGTTACTTTTGATTCTAATGTCCAAACCTATGAGCATGTTGCAATCAACGAATCCACGGATCTTTTATTCGATAGTAAAGAGTGTCAGAAAGAGGAGGGGAAAATCTTGAAAGAATCAAGCCAATCCAAGACTTCGTCTGAAGATGGTTCCATCACTTCTAGCTCAGGGTCATACCCTCCTAATCATAGGTACCAGAATTGCAGGGACAGTGACGATGAAGATGAACCATTAGACTATGATGAGGACAGTGATCTCGATGATGATGTTCTTGAGGATGACACTGATGATAATGGGGAACTAGAGTATGAAGATGAAATTGTAGACTCGAAGAGAGGGACACAAGTAATGACTGAGGATTCTGATAGTGCAATGCCGAAAAAGCCAACTGGGCTAAACTACAGTGCTCGTGATAGGAGTGGTTATGTTCATGCTGTGCTTAACCCGGTTGAAAATCTCACACAATGGAAAGCTGTGAAAGCCAAAAAGACAACAGTAATGAAGCCTCAGAAGGAGAATGTCACCCTGGCTGATGAACCCCGGATTTCGTTCAGTTCAGAGCCAAGTTTTAAGGAAGTATCGTCGAGTTTCAAGTCACTTAAGAGGCAATCTGGTCAGGCCAGGAATTCTAACCAAGAAATGGCAGTTGATGCTAGCCTGTCAAATTGGTTGGGTTCATCAGAAGCTACACCTGTTAACAAGACTAGCACAATATCTCTGGACACTGCTACACCTGAGAAAAGCATGTCCTACGGATCACCACACTCAGCAACAAGCCACGAAGATAGACCAATTTTAGGTGCATTAACAGTTGAAGAGCTGAGACAGTTTTCAGCTTCATCTTCACCGCGGAAGTCACCCAGTAGAAGCCCTGATGAGATGGCCATAATTGGGACTGTTGGGAGCTACTGGAATGATCACACTGGTCCTGCCAAGGGTTCTGGCGCCTCCTCTTACAAAGGAATACCAAACACGACCAGCAAGTACAGAGAGGTACGCGTGAAGATAGAAGAGTCAACTGGCACTCTACCCCATTTGAGACACGGTTGGAAAGAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

50.92

Weight (kDa)

5.1

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 498
AccB1I GGYRCC 2 cut(s) 498, 1250
AccB7I CCANNNNNTGG 1 cut(s) 946
AccI GTMKAC 1 cut(s) 630
AccII CGCG 2 cut(s) 1156, 1305
AciI CCGC 3 cut(s) 46, 1154, 1156
AclWI GGATC 3 cut(s) 288, 375, 1069
AcoI YGGCCR 1 cut(s) 1188
AcsI RAATTY 1 cut(s) 931
AcuI CTGAAG 1 cut(s) 468
AcyI GRCGYC 1 cut(s) 1251
AfaI GTAC 4 cut(s) 65, 500, 1292, 1302
AfiI CCNNNNNNNGG 5 cut(s) 253, 946, 1103, 1197, 1241
AflII CTTAAG 1 cut(s) 905
AflIII ACRYGT 1 cut(s) 1303
AgsI TTSAA 8 cut(s) 113, 166, 196, 226, 418, 758, 898, 1121
AjnI CCWGG 2 cut(s) 831, 926
AluBI AGCT 8 cut(s) 291, 471, 779, 992, 1126, 1142, 1212, 1363
AluI AGCT 8 cut(s) 291, 471, 779, 992, 1126, 1142, 1212, 1363
Alw21I GWGCWC 1 cut(s) 715
Alw26I GTCTC 2 cut(s) 1123, 1339
AlwI GGATC 3 cut(s) 288, 375, 1069
AoxI GGCC 2 cut(s) 924, 1188
ApoI RAATTY 1 cut(s) 931
Asp718I GGTACC 1 cut(s) 498
AspLEI GCGC 1 cut(s) 1253
AspS9I GGNCC 1 cut(s) 1232
AsuC2I CCSGG 2 cut(s) 752, 847
AsuHPI GGTGA 4 cut(s) 820, 1056, 1143, 1155
AsuNHI GCTAGC 1 cut(s) 959
AvaII GGWCC 1 cut(s) 1232
BalI TGGCCA 1 cut(s) 1190
BanI GGYRCC 2 cut(s) 498, 1250
BauI CACGAG 1 cut(s) 714
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 715
BccI CCATC 5 cut(s) 188, 218, 446, 467, 1180
BciT130I CCWGG 2 cut(s) 833, 928
BclI TGATCA 1 cut(s) 1222
BcnI CCSGG 2 cut(s) 752, 847
BcoDI GTCTC 2 cut(s) 1123, 1339
BfaI CTAG 5 cut(s) 300, 468, 608, 960, 1011
BfmI CTRYAG 1 cut(s) 706
BfoI RGCGCY 1 cut(s) 1254
BfrI CTTAAG 1 cut(s) 905
BglI GCCNNNNNGGC 1 cut(s) 697
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
Bme1390I CCNGG 4 cut(s) 752, 833, 847, 928
Bme18I GGWCC 1 cut(s) 1232
BmgT120I GGNCC 1 cut(s) 1232
BmiI GGNNCC 3 cut(s) 457, 500, 1252
BmrFI CCNGG 4 cut(s) 752, 833, 847, 928
BmrI ACTGGG 2 cut(s) 705, 1161
BmsI GCATC 1 cut(s) 946
BmtI GCTAGC 1 cut(s) 963
BmuI ACTGGG 2 cut(s) 705, 1161
BpiI GAAGAC 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 472
BpuEI CTTGAG 1 cut(s) 599
BpuMI CCSGG 2 cut(s) 752, 847
BsaHI GRCGYC 1 cut(s) 1251
BsaJI CCNNGG 5 cut(s) 363, 831, 845, 1154, 1239
Bsc4I CCNNNNNNNGG 5 cut(s) 253, 946, 1103, 1197, 1241
Bse118I RCCGGY 2 cut(s) 133, 274
Bse1I ACTGG 5 cut(s) 700, 1167, 1220, 1234, 1330
Bse3DI GCAATG 1 cut(s) 684
BseBI CCWGG 2 cut(s) 833, 928
BseDI CCNNGG 5 cut(s) 363, 831, 845, 1154, 1239
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 5 cut(s) 253, 946, 1103, 1197, 1241
BseMI GCAATG 1 cut(s) 684
BseMII CTCAG 7 cut(s) 278, 486, 651, 827, 1032, 1086, 1118
BseNI ACTGG 5 cut(s) 700, 1167, 1220, 1234, 1330
BseRI GAGGAG 2 cut(s) 416, 1246
Bsh1236I CGCG 2 cut(s) 1156, 1305
BshFI GGCC 2 cut(s) 926, 1190
BshNI GGYRCC 2 cut(s) 498, 1250
BsiHKAI GWGCWC 1 cut(s) 715
BsiSI CCGG 4 cut(s) 134, 275, 752, 847
BslFI GGGAC 3 cut(s) 527, 658, 1213
BslI CCNNNNNNNGG 5 cut(s) 253, 946, 1103, 1197, 1241
BsmAI GTCTC 2 cut(s) 1123, 1339
BsmFI GGGAC 3 cut(s) 527, 658, 1213
BsnI GGCC 2 cut(s) 926, 1190
Bsp1286I GDGCHC 1 cut(s) 715
Bsp143I GATC 5 cut(s) 280, 367, 559, 1061, 1222
BspACI CCGC 3 cut(s) 46, 1154, 1156
BspANI GGCC 2 cut(s) 926, 1190
BspCNI CTCAG 7 cut(s) 279, 485, 652, 826, 1033, 1085, 1119
BspFNI CGCG 2 cut(s) 1156, 1305
BspLI GGNNCC 3 cut(s) 457, 500, 1252
BspOI GCTAGC 1 cut(s) 963
BspPI GGATC 3 cut(s) 288, 375, 1069
BspQI GCTCTTC 1 cut(s) 1116
BspT107I GGYRCC 2 cut(s) 498, 1250
BspTI CTTAAG 1 cut(s) 905
BsrDI GCAATG 1 cut(s) 684
BsrFI RCCGGY 2 cut(s) 133, 274
BsrI ACTGG 5 cut(s) 700, 1167, 1220, 1234, 1330
BssAI RCCGGY 2 cut(s) 133, 274
BssECI CCNNGG 5 cut(s) 363, 831, 845, 1154, 1239
BssMI GATC 5 cut(s) 280, 367, 559, 1061, 1222
BssNI GRCGYC 1 cut(s) 1251
BssSI CACGAG 1 cut(s) 714
BssT1I CCWWGG 1 cut(s) 1239
Bst2BI CACGAG 1 cut(s) 714
Bst2UI CCWGG 2 cut(s) 833, 928
Bst4CI ACNGT 8 cut(s) 518, 557, 710, 802, 1117, 1134, 1204, 1352
Bst6I CTCTTC 3 cut(s) 632, 1116, 1311
BstACI GRCGYC 1 cut(s) 1251
BstAFI CTTAAG 1 cut(s) 905
BstAPI GCANNNNNTGC 1 cut(s) 956
BstC8I GCNNGC 1 cut(s) 961
BstDEI CTNAG 7 cut(s) 287, 472, 660, 813, 1041, 1072, 1127
BstDSI CCRYGG 2 cut(s) 363, 1154
BstF5I GGATG 1 cut(s) 589
BstFNI CGCG 2 cut(s) 1156, 1305
BstH2I RGCGCY 1 cut(s) 1254
BstHHI GCGC 1 cut(s) 1253
BstKTI GATC 5 cut(s) 283, 370, 562, 1064, 1225
BstMAI GTCTC 2 cut(s) 1123, 1339
BstMBI GATC 5 cut(s) 280, 367, 559, 1061, 1222
BstMWI GCNNNNNNNGC 4 cut(s) 688, 697, 785, 956
BstNI CCWGG 2 cut(s) 833, 928
BstNSI RCATGY 3 cut(s) 21, 347, 1054
BstSCI CCNGG 4 cut(s) 750, 831, 845, 926
BstSFI CTRYAG 1 cut(s) 706
BstUI CGCG 2 cut(s) 1156, 1305
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 367
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 2 cut(s) 926, 1190
BtgI CCRYGG 2 cut(s) 363, 1154
BtsCI GGATG 1 cut(s) 589
BtsI GCAGTG 1 cut(s) 1029
BtsIMutI CAGTG 6 cut(s) 523, 562, 588, 715, 1029, 1227
Cac8I GCNNGC 1 cut(s) 961
CfoI GCGC 1 cut(s) 1253
Cfr10I RCCGGY 2 cut(s) 133, 274
Cfr13I GGNCC 1 cut(s) 1232
Cfr42I CCGCGG 1 cut(s) 1157
Csp6I GTAC 4 cut(s) 64, 499, 1291, 1301
CviAII CATG 4 cut(s) 18, 344, 737, 1051
CviQI GTAC 4 cut(s) 64, 499, 1291, 1301
DdeI CTNAG 7 cut(s) 287, 472, 660, 813, 1041, 1072, 1127
DinI GGCGCC 1 cut(s) 1252
DpnI GATC 5 cut(s) 282, 369, 561, 1063, 1224
DpnII GATC 5 cut(s) 280, 367, 559, 1061, 1222
EaeI YGGCCR 1 cut(s) 1188
Eam1104I CTCTTC 3 cut(s) 632, 1116, 1311
EarI CTCTTC 3 cut(s) 632, 1116, 1311
Eco130I CCWWGG 1 cut(s) 1239
Eco47I GGWCC 1 cut(s) 1232
Eco57I CTGAAG 1 cut(s) 468
EcoRI GAATTC 1 cut(s) 931
EcoRII CCWGG 2 cut(s) 831, 926
EcoT14I CCWWGG 1 cut(s) 1239
EgeI GGCGCC 1 cut(s) 1252
EheI GGCGCC 1 cut(s) 1252
ErhI CCWWGG 1 cut(s) 1239
FaeI CATG 4 cut(s) 21, 347, 740, 1054
FaqI GGGAC 3 cut(s) 527, 658, 1213
FatI CATG 4 cut(s) 17, 343, 736, 1050
FbaI TGATCA 1 cut(s) 1222
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 1 cut(s) 46
FokI GGATG 1 cut(s) 596
Fsp4HI GCNGC 1 cut(s) 46
FspBI CTAG 5 cut(s) 300, 468, 608, 960, 1011
GlaI GCGC 1 cut(s) 1252
GluI GCNGC 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 1254
HaeIII GGCC 2 cut(s) 926, 1190
HapII CCGG 4 cut(s) 134, 275, 752, 847
HhaI GCGC 1 cut(s) 1253
Hin1I GRCGYC 1 cut(s) 1251
Hin1II CATG 4 cut(s) 21, 347, 740, 1054
Hin6I GCGC 1 cut(s) 1251
HinP1I GCGC 1 cut(s) 1251
HincII GTYRAC 2 cut(s) 1003, 1323
HindII GTYRAC 2 cut(s) 1003, 1323
HinfI GANTC 7 cut(s) 52, 320, 359, 422, 632, 665, 1319
HpaI GTTAAC 1 cut(s) 1003
HpaII CCGG 4 cut(s) 134, 275, 752, 847
HphI GGTGA 4 cut(s) 820, 1056, 1143, 1155
Hpy166II GTNNAC 3 cut(s) 631, 1003, 1323
Hpy188I TCNGA 6 cut(s) 396, 448, 670, 816, 865, 988
Hpy188III TCNNGA 5 cut(s) 415, 563, 578, 716, 1025
Hpy8I GTNNAC 3 cut(s) 631, 1003, 1323
Hpy99I CGWCG 1 cut(s) 892
HpyAV CCTTC 2 cut(s) 220, 811
HpyCH4III ACNGT 8 cut(s) 518, 557, 710, 802, 1117, 1134, 1204, 1352
HpyCH4V TGCA 5 cut(s) 17, 350, 510, 677, 1109
HpyF10VI GCNNNNNNNGC 4 cut(s) 688, 697, 785, 956
HpyF3I CTNAG 7 cut(s) 287, 472, 660, 813, 1041, 1072, 1127
Hsp92I GRCGYC 1 cut(s) 1251
Hsp92II CATG 4 cut(s) 21, 347, 740, 1054
HspAI GCGC 1 cut(s) 1251
KasI GGCGCC 1 cut(s) 1250
KpnI GGTACC 1 cut(s) 502
Ksp22I TGATCA 1 cut(s) 1222
KspAI GTTAAC 1 cut(s) 1003
KspI CCGCGG 1 cut(s) 1157
Kzo9I GATC 5 cut(s) 280, 367, 559, 1061, 1222
LguI GCTCTTC 1 cut(s) 1116
LmnI GCTCC 1 cut(s) 1209
LweI GCATC 1 cut(s) 946
MaeI CTAG 5 cut(s) 300, 468, 608, 960, 1011
MaeIII GTNAC 5 cut(s) 310, 518, 826, 900, 1161
MalI GATC 5 cut(s) 282, 369, 561, 1063, 1224
MboI GATC 5 cut(s) 280, 367, 559, 1061, 1222
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 715
MlsI TGGCCA 1 cut(s) 1190
MluI ACGCGT 1 cut(s) 1303
MluNI TGGCCA 1 cut(s) 1190
Mly113I GGCGCC 1 cut(s) 1251
MlyI GAGTC 2 cut(s) 626, 1328
MmeI TCCRAC 1 cut(s) 1334
Mox20I TGGCCA 1 cut(s) 1190
MscI TGGCCA 1 cut(s) 1190
MseI TTAA 5 cut(s) 747, 876, 906, 1002, 1112
MslI CAYNNNNRTG 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 1190
MspA1I CMGCKG 1 cut(s) 1156
MspCI CTTAAG 1 cut(s) 905
MspI CCGG 4 cut(s) 134, 275, 752, 847
MspR9I CCNGG 4 cut(s) 752, 833, 847, 928
MvaI CCWGG 2 cut(s) 833, 928
MvnI CGCG 2 cut(s) 1156, 1305
MwoI GCNNNNNNNGC 4 cut(s) 688, 697, 785, 956
NarI GGCGCC 1 cut(s) 1251
NciI CCSGG 2 cut(s) 752, 847
NdeII GATC 5 cut(s) 280, 367, 559, 1061, 1222
NheI GCTAGC 1 cut(s) 959
NlaIII CATG 4 cut(s) 21, 347, 740, 1054
NlaIV GGNNCC 3 cut(s) 457, 500, 1252
NmuCI GTSAC 4 cut(s) 518, 826, 900, 1161
NspI RCATGY 3 cut(s) 21, 347, 1054
PciSI GCTCTTC 1 cut(s) 1116
PfeI GAWTC 5 cut(s) 52, 320, 359, 422, 665
PflFI GACNNNGTC 1 cut(s) 442
PflMI CCANNNNNTGG 1 cut(s) 946
PkrI GCNGC 1 cut(s) 47
PleI GAGTC 2 cut(s) 626, 1327
PluTI GGCGCC 1 cut(s) 1254
PpsI GAGTC 2 cut(s) 626, 1327
Psp6I CCWGG 2 cut(s) 831, 926
PspGI CCWGG 2 cut(s) 831, 926
PspN4I GGNNCC 3 cut(s) 457, 500, 1252
PspPI GGNCC 1 cut(s) 1232
PsuI RGATCY 1 cut(s) 367
PsyI GACNNNGTC 1 cut(s) 442
RsaI GTAC 4 cut(s) 65, 500, 1292, 1302
RsaNI GTAC 4 cut(s) 64, 499, 1291, 1301
RseI CAYNNNNRTG 1 cut(s) 215
SacII CCGCGG 1 cut(s) 1157
SapI GCTCTTC 1 cut(s) 1116
SaqAI TTAA 5 cut(s) 747, 876, 906, 1002, 1112
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 5 cut(s) 280, 367, 559, 1061, 1222
Sau96I GGNCC 1 cut(s) 1232
SchI GAGTC 2 cut(s) 626, 1328
ScrFI CCNGG 4 cut(s) 752, 833, 847, 928
SduI GDGCHC 1 cut(s) 715
SfaNI GCATC 1 cut(s) 946
SfcI CTRYAG 1 cut(s) 706
SfoI GGCGCC 1 cut(s) 1252
Sfr303I CCGCGG 1 cut(s) 1157
SgrBI CCGCGG 1 cut(s) 1157
SinI GGWCC 1 cut(s) 1232
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 2 cut(s) 578, 905
SmoI CTYRAG 2 cut(s) 578, 905
SsiI CCGC 3 cut(s) 46, 1154, 1156
SspDI GGCGCC 1 cut(s) 1250
SspMI CTAG 5 cut(s) 300, 468, 608, 960, 1011
StyD4I CCNGG 4 cut(s) 750, 831, 845, 926
StyI CCWWGG 1 cut(s) 1239
TaaI ACNGT 8 cut(s) 518, 557, 710, 802, 1117, 1134, 1204, 1352
TaqI TCGA 4 cut(s) 378, 564, 635, 890
TatI WGTACW 1 cut(s) 1290
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 5 cut(s) 52, 320, 359, 422, 665
Tru1I TTAA 5 cut(s) 747, 876, 906, 1002, 1112
Tru9I TTAA 5 cut(s) 747, 876, 906, 1002, 1112
TscAI CASTG 6 cut(s) 523, 562, 595, 715, 1036, 1234
TseFI GTSAC 4 cut(s) 518, 826, 900, 1161
Tsp45I GTSAC 4 cut(s) 518, 826, 900, 1161
TspGWI ACGGA 2 cut(s) 380, 1074
TspRI CASTG 6 cut(s) 523, 562, 595, 715, 1036, 1234
Tth111I GACNNNGTC 1 cut(s) 442
Van91I CCANNNNNTGG 1 cut(s) 946
Vha464I CTTAAG 1 cut(s) 905
VpaK11BI GGWCC 1 cut(s) 1232
XapI RAATTY 1 cut(s) 931
XceI RCATGY 3 cut(s) 21, 347, 1054
XmiI GTMKAC 1 cut(s) 630
XspI CTAG 5 cut(s) 300, 468, 608, 960, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.