Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Reverse (-)

3393649 .. 3394327

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36147

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCAGCTGTGGTGGATCTGGGTTTTCAAGGTGGTGGGCATGGCAGAGGCAAGGCACAGCACCTTCGACTTGGGGAGATTGAAGACATGAGGCTGCGGTGGTGGCTTGCCGGCGGGTCATCTGACGACAAGGGTGAGGAGCACTGTGGCGGCGACTTCTTTCCTTTGGTTAAAGTCTTGGTTTTAGTTAGGTTGCTTTTTAGTTTACTTTGGTTATTGGTTAGTTTACTTTGGTCAATAGTTGGTCCCTACTCGTTTGAGCTAGGGTTGGGTCAAATTGATGTGCCATGGATGTGGTGTCTTTCCTGGGGACGAGATGGTGTAATTTCGGTTTTATCTTATGGTCAATGTGCTAACAAGCGATCCTTGCACGTGGTCTGGTTTCATTGGGGCGCGGTGTGGAAGAGGGCGCTGGTTTCTCTGGCGGTTGTCTATGGGGTGTTATCAAGTTTCTCGGGGTTATCTGTAGCCTGTGAGGTTGGGCGAAATAGGTGGTTAGGGGTTGGGCTCTTTTGGCTCATGGATGTCATCCTGGATGACGGACCAGTAACTAGTTCGGTTTTTAGGGAGGAGAGTGGGGAGTTCTTGTCCACCACCGGTCATTCCCATATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.72

Weight (kDa)

6.14

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	395
AciI	CCGC	5 cut(s)	97, 114, 150, 395, 425
AclWI	GGATC	2 cut(s)	24, 357
AcvI	CACGTG	1 cut(s)	373
AgeI	ACCGGT	1 cut(s)	596
AgsI	TTSAA	2 cut(s)	29, 83
AhlI	ACTAGT	1 cut(s)	551
AjnI	CCWGG	2 cut(s)	305, 531
AluBI	AGCT	2 cut(s)	8, 262
AluI	AGCT	2 cut(s)	8, 262
Alw21I	GWGCWC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	24, 357
Ama87I	CYCGRG	1 cut(s)	454
ApeKI	GCWGC	2 cut(s)	5, 94
AsiGI	ACCGGT	1 cut(s)	596
AspLEI	GCGC	2 cut(s)	395, 412
AspS9I	GGNCC	2 cut(s)	245, 542
AsuHPI	GGTGA	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	454
AvaII	GGWCC	2 cut(s)	245, 542
BanII	GRGCYC	1 cut(s)	510
BbrPI	CACGTG	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	17, 81
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	2 cut(s)	307, 533
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	2 cut(s)	263, 552
BfmI	CTRYAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	413
BisI	GCNGC	3 cut(s)	6, 95, 151
BlsI	GCNGC	3 cut(s)	7, 96, 152
Bme1390I	CCNGG	2 cut(s)	307, 533
Bme18I	GGWCC	2 cut(s)	245, 542
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	2 cut(s)	245, 542
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	307, 533
BpiI	GAAGAC	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	287, 306
BsaWI	WCCGGW	1 cut(s)	596
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bse118I	RCCGGY	2 cut(s)	110, 596
Bse1I	ACTGG	1 cut(s)	545
BseBI	CCWGG	2 cut(s)	307, 533
BseDI	CCNNGG	2 cut(s)	287, 306
BseGI	GGATG	4 cut(s)	297, 528, 529, 541
BseNI	ACTGG	1 cut(s)	545
BseRI	GAGGAG	2 cut(s)	152, 584
BseXI	GCAGC	2 cut(s)	17, 81
Bsh1236I	CGCG	1 cut(s)	395
BshTI	ACCGGT	1 cut(s)	596
BsiHKAI	GWGCWC	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	111, 597
BslFI	GGGAC	2 cut(s)	231, 324
BsmFI	GGGAC	2 cut(s)	231, 324
BsoBI	CYCGRG	1 cut(s)	454
Bsp1286I	GDGCHC	2 cut(s)	144, 510
Bsp143I	GATC	2 cut(s)	16, 362
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	5 cut(s)	97, 114, 150, 395, 425
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	2 cut(s)	24, 357
BsrFI	RCCGGY	2 cut(s)	110, 596
BsrI	ACTGG	1 cut(s)	545
BssAI	RCCGGY	2 cut(s)	110, 596
BssECI	CCNNGG	2 cut(s)	287, 306
BssMI	GATC	2 cut(s)	16, 362
BssT1I	CCWWGG	1 cut(s)	287
Bst2UI	CCWGG	2 cut(s)	307, 533
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	2 cut(s)	108, 112
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	4 cut(s)	297, 528, 529, 541
BstFNI	CGCG	1 cut(s)	395
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	2 cut(s)	395, 412
BstKTI	GATC	2 cut(s)	19, 365
BstMBI	GATC	2 cut(s)	16, 362
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 367, 514
BstNI	CCWGG	2 cut(s)	307, 533
BstSCI	CCNGG	2 cut(s)	305, 531
BstSFI	CTRYAG	1 cut(s)	465
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	17, 81
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	16
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	4 cut(s)	297, 528, 529, 541
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	108, 112
CfoI	GCGC	2 cut(s)	395, 412
Cfr10I	RCCGGY	2 cut(s)	110, 596
Cfr13I	GGNCC	2 cut(s)	245, 542
CspAI	ACCGGT	1 cut(s)	596
CviAII	CATG	4 cut(s)	41, 88, 288, 520
CviJI	RGCY	7 cut(s)	8, 94, 106, 262, 470, 508, 517
CviKI_1	RGCY	7 cut(s)	8, 94, 106, 262, 470, 508, 517
DpnI	GATC	2 cut(s)	18, 364
DpnII	GATC	2 cut(s)	16, 362
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	510
Eco47I	GGWCC	2 cut(s)	245, 542
Eco72I	CACGTG	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	305, 531
EcoT14I	CCWWGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	4 cut(s)	44, 91, 291, 523
FaiI	YATR	8 cut(s)	42, 89, 289, 342, 435, 521, 609, 614
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FaqI	GGGAC	2 cut(s)	231, 324
FatI	CATG	4 cut(s)	40, 87, 287, 519
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	3 cut(s)	6, 95, 151
FokI	GGATG	4 cut(s)	304, 515, 536, 548
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	3 cut(s)	6, 95, 151
FspBI	CTAG	2 cut(s)	263, 552
GlaI	GCGC	2 cut(s)	394, 411
GluI	GCNGC	3 cut(s)	6, 95, 151
HaeII	RGCGCY	1 cut(s)	413
HapII	CCGG	2 cut(s)	111, 597
HhaI	GCGC	2 cut(s)	395, 412
Hin1II	CATG	4 cut(s)	44, 91, 291, 523
Hin6I	GCGC	2 cut(s)	393, 410
HinP1I	GCGC	2 cut(s)	393, 410
HpaII	CCGG	2 cut(s)	111, 597
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	3 cut(s)	206, 227, 591
Hpy188I	TCNGA	1 cut(s)	124
Hpy8I	GTNNAC	3 cut(s)	206, 227, 591
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 367, 514
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	4 cut(s)	44, 91, 291, 523
HspAI	GCGC	2 cut(s)	393, 410
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	16, 362
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	2 cut(s)	17, 81
MaeI	CTAG	2 cut(s)	263, 552
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	2 cut(s)	18, 364
MboI	GATC	2 cut(s)	16, 362
MboII	GAAGA	2 cut(s)	95, 415
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	144, 510
MluCI	AATT	2 cut(s)	276, 324
MnlI	CCTC	6 cut(s)	41, 84, 130, 399, 469, 562
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	292
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	2 cut(s)	111, 597
MspR9I	CCNGG	2 cut(s)	307, 533
MvaI	CCWGG	2 cut(s)	307, 533
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	3 cut(s)	103, 367, 514
NaeI	GCCGGC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	2 cut(s)	16, 362
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	4 cut(s)	44, 91, 291, 523
NlaIV	GGNNCC	1 cut(s)	247
PdiI	GCCGGC	1 cut(s)	112
PfoI	TCCNGGA	1 cut(s)	531
PinAI	ACCGGT	1 cut(s)	596
PkrI	GCNGC	3 cut(s)	7, 96, 152
PmaCI	CACGTG	1 cut(s)	373
PmlI	CACGTG	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	373
Psp6I	CCWGG	2 cut(s)	305, 531
PspCI	CACGTG	1 cut(s)	373
PspGI	CCWGG	2 cut(s)	305, 531
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	2 cut(s)	245, 542
PsuI	RGATCY	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	3 cut(s)	6, 95, 151
Sau3AI	GATC	2 cut(s)	16, 362
Sau96I	GGNCC	2 cut(s)	245, 542
ScrFI	CCNGG	2 cut(s)	307, 533
SduI	GDGCHC	2 cut(s)	144, 510
SetI	ASST	8 cut(s)	10, 34, 66, 194, 264, 375, 480, 494
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	2 cut(s)	245, 542
SmiMI	CAYNNNNRTG	1 cut(s)	292
SpeI	ACTAGT	1 cut(s)	551
Sse9I	AATT	2 cut(s)	276, 324
SsiI	CCGC	5 cut(s)	97, 114, 150, 395, 425
SspMI	CTAG	2 cut(s)	263, 552
StyD4I	CCNGG	2 cut(s)	305, 531
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	1 cut(s)	67
TasI	AATT	2 cut(s)	276, 324
TauI	GCSGC	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	149
TseI	GCWGC	2 cut(s)	5, 94
TspDTI	ATGAA	1 cut(s)	374
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	245, 542
XspI	CTAG	2 cut(s)	263, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.