Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Forward (+)

1708956 .. 1710416

Gene Structure 1461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTCCTTAGAGAAAATACTGGACGGATCCCGGCTTCCTGGAAATGTGATTCGAGATGTAAATCCCTACAGATGCGCGCCCTCGAATTTACCCGATGGTTTTTGGTACTTCATTCGCTCGAGTGAGAGCAACCCTACAAATATTGGGCAGTGGAGAGCCAAAGGGGAGGCCAGTAGAATATTCTCAAACTCCTCCGTCTATGGTTGGAGAGCTACCCTTGAATTCTATCAATGCCAAGCCCCTCATGAAACTAAAACCAATTGGGTGATGCAAGAATACTGGATAACTCAGAAGAAATCGTCGGAAAGCAGCAAATTGAAGGATGTCTGGTCGCTTTGCAGAGTCTTTCTTGGGGATGATGAAACACCAAACTCCAAGAAGCTTCAGGAATTGGTGAATTCTGATAGGGCTAGTCACTCAACACATTCAGTTGTTCCGCGTGTTGAGGATCGTGGTTCCACCAGCAAGCCTCGTGTTGAAAATGAGGCAAGCAATGATCGTGAAACGGGAACATTGGTAGTTACAGAAAGGCTTCCAGTTCGAGATGATAATGTGCAAATTATGCACGAGAATGATTACCTCTCGAGAGGCGACTACTTGGAATTGCTGGATCTTGACACACCAGCATCTCATTCATTTAGTTCAGTTTCGAGTTGCTTGACAATGTCCTCGGACGAATGCTTCGATTCTCTGGCATTGTTGGAAGAACTAGAGCCTAAAAGTAAGCAAGAATTGGTGACGAACAACAATGAGTTGGTCGTGTTGGCATCCTCTGCAGGATCTTTCGACAAGTCTCGTGAGGAAGAAAGAACCAGAAATCGTTCTCCGAATCCTGGTTCATCTGTTTGCGCCAAGATTGTCACAGAAAATAGTTCAAAAAATATGAGCAGAAAACAAAAATCAGACGATAGGAATGAAGGGCCATCAAATTCTCAGAATGCTAATGTTGGTGGAACCAAAAGGCTTAAGAGGAAGAAGTATTTCTGCTTCATGCCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

334

Amino Acids

37.68

Weight (kDa)

6.28

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	3 - 93	2.2e-13	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	77, 439
AciI	CCGC	1 cut(s)	437
AclWI	GGATC	5 cut(s)	21, 34, 456, 618, 787
AcsI	RAATTY	4 cut(s)	85, 221, 397, 928
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	833
AflII	CTTAAG	1 cut(s)	965
AgsI	TTSAA	4 cut(s)	221, 319, 479, 876
AjnI	CCWGG	2 cut(s)	37, 832
AluBI	AGCT	2 cut(s)	212, 382
AluI	AGCT	2 cut(s)	212, 382
Alw26I	GTCTC	1 cut(s)	798
AlwI	GGATC	5 cut(s)	21, 34, 456, 618, 787
Ama87I	CYCGRG	2 cut(s)	118, 583
AoxI	GGCC	2 cut(s)	168, 920
ApeKI	GCWGC	1 cut(s)	309
ApoI	RAATTY	4 cut(s)	85, 221, 397, 928
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
Asp700I	GAANNNNTTC	3 cut(s)	531, 820, 980
AspLEI	GCGC	3 cut(s)	77, 79, 851
AspS9I	GGNCC	1 cut(s)	920
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	3 cut(s)	277, 406, 748
AvaI	CYCGRG	2 cut(s)	118, 583
BamHI	GGATCC	1 cut(s)	26
BarI	GAAGNNNNNNTAC	1 cut(s)	971
BauI	CACGAG	3 cut(s)	471, 566, 795
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	2 cut(s)	89, 931
BceAI	ACGGC	1 cut(s)	979
BciT130I	CCWGG	2 cut(s)	39, 834
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	798
BfaI	CTAG	2 cut(s)	411, 710
BfmI	CTRYAG	2 cut(s)	67, 774
BfrI	CTTAAG	1 cut(s)	965
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme1390I	CCNGG	3 cut(s)	31, 39, 834
BmeT110I	CYCGRG	2 cut(s)	118, 583
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	3 cut(s)	28, 457, 955
BmrFI	CCNGG	3 cut(s)	31, 39, 834
BmsI	GCATC	4 cut(s)	62, 258, 635, 776
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	669
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse1I	ACTGG	4 cut(s)	24, 171, 284, 536
Bse3DI	GCAATG	1 cut(s)	499
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	39, 834
BseDI	CCNNGG	1 cut(s)	669
BseGI	GGATG	3 cut(s)	328, 361, 767
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	2 cut(s)	302, 947
BseNI	ACTGG	4 cut(s)	24, 171, 284, 536
BsePI	GCGCGC	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	321
Bsh1236I	CGCG	2 cut(s)	77, 439
BshFI	GGCC	2 cut(s)	170, 922
BsiHKCI	CYCGRG	2 cut(s)	118, 583
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	833
BsmAI	GTCTC	1 cut(s)	798
BsmI	GAATGC	2 cut(s)	683, 943
BsnI	GGCC	2 cut(s)	170, 922
BsoBI	CYCGRG	2 cut(s)	118, 583
Bsp143I	GATC	5 cut(s)	26, 448, 496, 610, 779
BspACI	CCGC	1 cut(s)	437
BspANI	GGCC	2 cut(s)	170, 922
BspCNI	CTCAG	2 cut(s)	301, 946
BspFNI	CGCG	2 cut(s)	77, 439
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	28, 457, 955
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	5 cut(s)	21, 34, 456, 618, 787
BspTI	CTTAAG	1 cut(s)	965
BsrDI	GCAATG	1 cut(s)	499
BsrI	ACTGG	4 cut(s)	24, 171, 284, 536
BssECI	CCNNGG	1 cut(s)	669
BssHII	GCGCGC	1 cut(s)	75
BssMI	GATC	5 cut(s)	26, 448, 496, 610, 779
BssSI	CACGAG	3 cut(s)	471, 566, 795
Bst2BI	CACGAG	3 cut(s)	471, 566, 795
Bst2UI	CCWGG	2 cut(s)	39, 834
BstAFI	CTTAAG	1 cut(s)	965
BstAPI	GCANNNNNTGC	2 cut(s)	562, 773
BstC8I	GCNNGC	3 cut(s)	77, 467, 490
BstDEI	CTNAG	3 cut(s)	7, 288, 933
BstF5I	GGATG	3 cut(s)	328, 361, 767
BstFNI	CGCG	2 cut(s)	77, 439
BstHHI	GCGC	3 cut(s)	77, 79, 851
BstKTI	GATC	5 cut(s)	29, 451, 499, 613, 782
BstMAI	GTCTC	1 cut(s)	798
BstMBI	GATC	5 cut(s)	26, 448, 496, 610, 779
BstMWI	GCNNNNNNNGC	2 cut(s)	562, 773
BstNI	CCWGG	2 cut(s)	39, 834
BstSCI	CCNGG	3 cut(s)	29, 37, 832
BstSFI	CTRYAG	2 cut(s)	67, 774
BstUI	CGCG	2 cut(s)	77, 439
BstV1I	GCAGC	1 cut(s)	321
BstX2I	RGATCY	3 cut(s)	26, 610, 779
BstYI	RGATCY	3 cut(s)	26, 610, 779
BsuRI	GGCC	2 cut(s)	170, 922
BtsCI	GGATG	3 cut(s)	328, 361, 767
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	3 cut(s)	77, 467, 490
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	3 cut(s)	77, 79, 851
Cfr13I	GGNCC	1 cut(s)	920
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	2 cut(s)	245, 991
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	3 cut(s)	7, 288, 933
DpnI	GATC	5 cut(s)	28, 450, 498, 612, 781
DpnII	GATC	5 cut(s)	26, 448, 496, 610, 779
Eco57I	CTGAAG	1 cut(s)	368
Eco88I	CYCGRG	2 cut(s)	118, 583
EcoRI	GAATTC	2 cut(s)	221, 397
EcoRII	CCWGG	2 cut(s)	37, 832
FaeI	CATG	2 cut(s)	248, 994
FaiI	YATR	5 cut(s)	201, 246, 563, 884, 992
FatI	CATG	2 cut(s)	244, 990
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	3 cut(s)	335, 368, 754
Fsp4HI	GCNGC	1 cut(s)	310
FspBI	CTAG	2 cut(s)	411, 710
GlaI	GCGC	3 cut(s)	76, 78, 850
GluI	GCNGC	1 cut(s)	310
HaeIII	GGCC	2 cut(s)	170, 922
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	3 cut(s)	77, 79, 851
Hin1II	CATG	2 cut(s)	248, 994
Hin6I	GCGC	3 cut(s)	75, 77, 849
HinP1I	GCGC	3 cut(s)	75, 77, 849
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	4 cut(s)	49, 342, 686, 829
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	3 cut(s)	277, 406, 748
Hpy188I	TCNGA	7 cut(s)	291, 304, 403, 673, 828, 904, 936
Hpy188III	TCNNGA	9 cut(s)	53, 245, 386, 500, 542, 583, 585, 614, 797
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	313, 911
HpyCH4V	TGCA	5 cut(s)	271, 339, 556, 565, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	562, 773
HpyF3I	CTNAG	3 cut(s)	7, 288, 933
Hsp92II	CATG	2 cut(s)	248, 994
HspAI	GCGC	3 cut(s)	75, 77, 849
Kzo9I	GATC	5 cut(s)	26, 448, 496, 610, 779
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	4 cut(s)	62, 258, 635, 776
MaeI	CTAG	2 cut(s)	411, 710
MaeIII	GTNAC	4 cut(s)	413, 520, 736, 859
MalI	GATC	5 cut(s)	28, 450, 498, 612, 781
MboI	GATC	5 cut(s)	26, 448, 496, 610, 779
MboII	GAAGA	4 cut(s)	304, 716, 815, 985
MfeI	CAATTG	1 cut(s)	259
MflI	RGATCY	3 cut(s)	26, 610, 779
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	3 cut(s)	185, 282, 681
MroXI	GAANNNNTTC	3 cut(s)	531, 820, 980
MseI	TTAA	1 cut(s)	966
MslI	CAYNNNNRTG	1 cut(s)	570
MspCI	CTTAAG	1 cut(s)	965
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	3 cut(s)	31, 39, 834
MunI	CAATTG	1 cut(s)	259
Mva1269I	GAATGC	2 cut(s)	683, 943
MvaI	CCWGG	2 cut(s)	39, 834
MvnI	CGCG	2 cut(s)	77, 439
MwoI	GCNNNNNNNGC	2 cut(s)	562, 773
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	5 cut(s)	26, 448, 496, 610, 779
NlaIII	CATG	2 cut(s)	248, 994
NlaIV	GGNNCC	3 cut(s)	28, 457, 955
NmuCI	GTSAC	3 cut(s)	413, 736, 859
PaeR7I	CTCGAG	2 cut(s)	118, 583
PagI	TCATGA	1 cut(s)	244
PauI	GCGCGC	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	681
PctI	GAATGC	2 cut(s)	683, 943
PdmI	GAANNNNTTC	3 cut(s)	531, 820, 980
PfeI	GAWTC	3 cut(s)	49, 686, 829
PflFI	GACNNNGTC	1 cut(s)	664
PfoI	TCCNGGA	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	311
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	37, 832
PspGI	CCWGG	2 cut(s)	37, 832
PspN4I	GGNNCC	3 cut(s)	28, 457, 955
PspPI	GGNCC	1 cut(s)	920
PspXI	VCTCGAGB	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	778
PsuI	RGATCY	3 cut(s)	26, 610, 779
PsyI	GACNNNGTC	1 cut(s)	664
PteI	GCGCGC	1 cut(s)	75
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	1 cut(s)	966
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	5 cut(s)	26, 448, 496, 610, 779
Sau96I	GGNCC	1 cut(s)	920
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	3 cut(s)	31, 39, 834
SetI	ASST	3 cut(s)	214, 384, 582
SfaNI	GCATC	4 cut(s)	62, 258, 635, 776
SfcI	CTRYAG	2 cut(s)	67, 774
Sfr274I	CTCGAG	2 cut(s)	118, 583
SlaI	CTCGAG	2 cut(s)	118, 583
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	3 cut(s)	118, 583, 965
SmoI	CTYRAG	3 cut(s)	118, 583, 965
SsiI	CCGC	1 cut(s)	437
SspI	AATATT	2 cut(s)	142, 180
SspMI	CTAG	2 cut(s)	411, 710
StyD4I	CCNGG	3 cut(s)	29, 37, 832
TaqI	TCGA	8 cut(s)	52, 83, 119, 541, 584, 650, 684, 786
TfiI	GAWTC	3 cut(s)	49, 686, 829
Tru1I	TTAA	1 cut(s)	966
Tru9I	TTAA	1 cut(s)	966
TscAI	CASTG	1 cut(s)	155
TseFI	GTSAC	3 cut(s)	413, 736, 859
TseI	GCWGC	1 cut(s)	309
Tsp45I	GTSAC	3 cut(s)	413, 736, 859
TspDTI	ATGAA	7 cut(s)	100, 261, 375, 624, 828, 930, 979
TspGWI	ACGGA	2 cut(s)	39, 184
TspRI	CASTG	1 cut(s)	155
Tth111I	GACNNNGTC	1 cut(s)	664
Vha464I	CTTAAG	1 cut(s)	965
XapI	RAATTY	4 cut(s)	85, 221, 397, 928
XhoI	CTCGAG	2 cut(s)	118, 583
XmnI	GAANNNNTTC	3 cut(s)	531, 820, 980
XspI	CTAG	2 cut(s)	411, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.