Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Reverse (-)

60642297 .. 60645260

Gene Structure 2964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG409400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCAAGAATACTGGATAACTTACGAGAAAGTTTCCGAAAACAGCAAGATAAAGGAAGCCAGTTTGCTTTGCAGAGTCCAGTCTATTGGTGCTGAACCGAAATCAAACTGCAAAAACCTCGAGAAAAAGGTTACTTCTGATGTTGCTAATCACTTCACACAACCAGTTGGTCCACTCGTGGAGAAACGTACTGGACACGCTTCCTCAAGCAAGCCTCAGGTGATCAAGGATAATGAAACAGGAACGTTAACTGTGACAGAAAGGCTTCCAGATCATCAAATAGAAATCATGCCCGAGACTGAGATAGAGTTTCCTTTCGGAGATGACTACATAGAATTGCTGGATCTTGATAGACCAGCATCATTTTCTTCTAGTTCAGATTCAAGTTGCTTGACAATATCATCAGACGAATGCTTCGATTCCCTGGCTTTGTTGGAAGAACTAGAACCCAAAACTGGTCAAGACCGTGCAAATAAGAATGCAGGCTGCAAATTCAGTATTTCAGTATCTCAAAAACCAGATGAGTTGGTTATGTATGCAGCTGCCGCTTCCTCAGGATCTTTGAACAAATCTCCAAGTGAAGAAAGGGTCAAAAGTCATTCTTCAATTCCCAGTTCAACAGTCTGCGTTAAGAGTAAAGAAAAGACTACAATGAAACTGAGCAGAAATCAAAAACCAGACCAAAGGAATGAAGGTTTCTCGAATTCGCATACAACAACACCTCCAGCAGGAAAGAAGGCTACTGTTGTCAAAACTAAGAAGCTTAAGAAAAAGTATCTTTGCTGCTTGCCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

265

Amino Acids

29.2

Weight (kDa)

7.52

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	546
AclI	AACGTT	1 cut(s)	245
AclWI	GGATC	2 cut(s)	351, 565
AcsI	RAATTY	2 cut(s)	491, 703
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	2 cut(s)	455, 728
AflII	CTTAAG	1 cut(s)	764
AgsI	TTSAA	4 cut(s)	384, 565, 606, 618
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	2 cut(s)	542, 763
AluI	AGCT	2 cut(s)	542, 763
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	2 cut(s)	351, 565
Ama87I	CYCGRG	2 cut(s)	119, 293
ApeKI	GCWGC	4 cut(s)	486, 539, 542, 783
ApoI	RAATTY	2 cut(s)	491, 703
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
Asp700I	GAANNNNTTC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	2 cut(s)	119, 293
AvaII	GGWCC	1 cut(s)	170
AxyI	CCTNAGG	2 cut(s)	216, 553
BauI	CACGAG	1 cut(s)	176
BbvI	GCAGC	4 cut(s)	473, 529, 551, 770
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	1 cut(s)	425
BclI	TGATCA	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	2 cut(s)	372, 443
BfrI	CTTAAG	1 cut(s)	764
BisI	GCNGC	5 cut(s)	487, 540, 543, 546, 784
BlsI	GCNGC	5 cut(s)	488, 541, 544, 547, 785
Bme1390I	CCNGG	1 cut(s)	425
Bme18I	GGWCC	1 cut(s)	170
BmeT110I	CYCGRG	2 cut(s)	119, 293
BmgT120I	GGNCC	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	425
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	1 cut(s)	368
BmuI	ACTGGG	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	706, 736
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 728
Bse1I	ACTGG	7 cut(s)	17, 60, 79, 164, 196, 460, 612
Bse21I	CCTNAGG	2 cut(s)	216, 553
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	455, 728
BseMII	CTCAG	4 cut(s)	230, 291, 567, 650
BseNI	ACTGG	7 cut(s)	17, 60, 79, 164, 196, 460, 612
BseXI	GCAGC	4 cut(s)	473, 529, 551, 770
BsiHKCI	CYCGRG	2 cut(s)	119, 293
BslI	CCNNNNNNNGG	2 cut(s)	455, 728
BsmAI	GTCTC	1 cut(s)	290
BsmI	GAATGC	2 cut(s)	416, 484
BsoBI	CYCGRG	2 cut(s)	119, 293
Bsp143I	GATC	4 cut(s)	222, 271, 343, 557
BspACI	CCGC	1 cut(s)	546
BspCNI	CTCAG	4 cut(s)	229, 292, 566, 651
BspPI	GGATC	2 cut(s)	351, 565
BspTI	CTTAAG	1 cut(s)	764
BsrI	ACTGG	7 cut(s)	17, 60, 79, 164, 196, 460, 612
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	4 cut(s)	222, 271, 343, 557
BssSI	CACGAG	1 cut(s)	176
Bst2BI	CACGAG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	4 cut(s)	253, 467, 622, 745
BstAFI	CTTAAG	1 cut(s)	764
BstC8I	GCNNGC	3 cut(s)	212, 484, 788
BstDEI	CTNAG	5 cut(s)	216, 300, 553, 659, 756
BstENI	CCTNNNNNAGG	1 cut(s)	726
BstKTI	GATC	4 cut(s)	225, 274, 346, 560
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	4 cut(s)	222, 271, 343, 557
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	423
BstV1I	GCAGC	4 cut(s)	473, 529, 551, 770
BstX2I	RGATCY	2 cut(s)	343, 557
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	2 cut(s)	343, 557
Bsu36I	CCTNAGG	2 cut(s)	216, 553
Cac8I	GCNNGC	3 cut(s)	212, 484, 788
Cfr13I	GGNCC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	2 cut(s)	289, 792
CviJI	RGCY	8 cut(s)	59, 214, 265, 428, 486, 542, 740, 763
CviKI_1	RGCY	8 cut(s)	59, 214, 265, 428, 486, 542, 740, 763
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	5 cut(s)	216, 300, 553, 659, 756
DpnI	GATC	4 cut(s)	224, 273, 345, 559
DpnII	GATC	4 cut(s)	222, 271, 343, 557
Eco47I	GGWCC	1 cut(s)	170
Eco81I	CCTNAGG	2 cut(s)	216, 553
Eco88I	CYCGRG	2 cut(s)	119, 293
EcoNI	CCTNNNNNAGG	1 cut(s)	726
EcoRI	GAATTC	1 cut(s)	703
EcoRII	CCWGG	1 cut(s)	423
FaeI	CATG	2 cut(s)	292, 795
FaiI	YATR	6 cut(s)	290, 332, 533, 537, 711, 793
FalI	AAGNNNNNCTT	2 cut(s)	586, 618
FatI	CATG	2 cut(s)	288, 791
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	5 cut(s)	487, 540, 543, 546, 784
Fsp4HI	GCNGC	5 cut(s)	487, 540, 543, 546, 784
FspBI	CTAG	2 cut(s)	372, 443
GluI	GCNGC	5 cut(s)	487, 540, 543, 546, 784
GsuI	CTGGAG	1 cut(s)	708
Hin1II	CATG	2 cut(s)	292, 795
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	3 cut(s)	75, 380, 419
HpaI	GTTAAC	1 cut(s)	249
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	173, 249
Hpy188I	TCNGA	5 cut(s)	37, 139, 320, 379, 406
Hpy188III	TCNNGA	6 cut(s)	121, 269, 347, 461, 555, 700
Hpy8I	GTNNAC	2 cut(s)	173, 249
HpyAV	CCTTC	2 cut(s)	686, 730
HpyCH4III	ACNGT	4 cut(s)	253, 467, 622, 745
HpyCH4IV	ACGT	2 cut(s)	187, 245
HpyCH4V	TGCA	7 cut(s)	4, 72, 111, 470, 482, 489, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	5 cut(s)	216, 300, 553, 659, 756
HpySE526I	ACGT	2 cut(s)	187, 245
Hsp92II	CATG	2 cut(s)	292, 795
Ksp22I	TGATCA	1 cut(s)	222
KspAI	GTTAAC	1 cut(s)	249
Kzo9I	GATC	4 cut(s)	222, 271, 343, 557
Lsp1109I	GCAGC	4 cut(s)	473, 529, 551, 770
LweI	GCATC	1 cut(s)	368
MaeI	CTAG	2 cut(s)	372, 443
MaeII	ACGT	2 cut(s)	187, 245
MaeIII	GTNAC	2 cut(s)	130, 253
MalI	GATC	4 cut(s)	224, 273, 345, 559
MboI	GATC	4 cut(s)	222, 271, 343, 557
MboII	GAAGA	4 cut(s)	360, 449, 593, 594
MflI	RGATCY	2 cut(s)	343, 557
MluCI	AATT	4 cut(s)	335, 491, 606, 703
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	5 cut(s)	128, 214, 225, 562, 732
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	3 cut(s)	248, 630, 765
MspA1I	CMGCKG	1 cut(s)	542
MspCI	CTTAAG	1 cut(s)	764
MspR9I	CCNGG	1 cut(s)	425
Mva1269I	GAATGC	2 cut(s)	416, 484
MvaI	CCWGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	1 cut(s)	545
NdeII	GATC	4 cut(s)	222, 271, 343, 557
NlaIII	CATG	2 cut(s)	292, 795
NmuCI	GTSAC	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	414
PctI	GAATGC	2 cut(s)	416, 484
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	380, 419
PkrI	GCNGC	5 cut(s)	488, 541, 544, 547, 785
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp1406I	AACGTT	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspPI	GGNCC	1 cut(s)	170
PsuI	RGATCY	2 cut(s)	343, 557
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SaqAI	TTAA	3 cut(s)	248, 630, 765
SatI	GCNGC	5 cut(s)	487, 540, 543, 546, 784
Sau3AI	GATC	4 cut(s)	222, 271, 343, 557
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	425
SetI	ASST	9 cut(s)	120, 132, 190, 222, 248, 544, 697, 724, 765
SfaNI	GCATC	1 cut(s)	368
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	3 cut(s)	119, 205, 764
SmoI	CTYRAG	3 cut(s)	119, 205, 764
Sse9I	AATT	4 cut(s)	335, 491, 606, 703
SsiI	CCGC	1 cut(s)	546
SspMI	CTAG	2 cut(s)	372, 443
StyD4I	CCNGG	1 cut(s)	423
TaaI	ACNGT	4 cut(s)	253, 467, 622, 745
TaiI	ACGT	2 cut(s)	190, 248
TaqI	TCGA	3 cut(s)	120, 417, 701
TasI	AATT	4 cut(s)	335, 491, 606, 703
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	2 cut(s)	380, 419
Tru1I	TTAA	3 cut(s)	248, 630, 765
Tru9I	TTAA	3 cut(s)	248, 630, 765
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	4 cut(s)	486, 539, 542, 783
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	3 cut(s)	249, 668, 705
Vha464I	CTTAAG	1 cut(s)	764
VpaK11BI	GGWCC	1 cut(s)	170
XagI	CCTNNNNNAGG	1 cut(s)	726
XapI	RAATTY	2 cut(s)	491, 703
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	2 cut(s)	372, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.