Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Forward (+)

34813332 .. 34814859

Gene Structure 1528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G390000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTCAATTATCAACCTAAAAATCACTTCAGGCCGTATCTTGTTGAGATCCCACTTGCTGGTTTTGTTCTGGGATTGGTACTTCATTCTCTCTAATGAGAACAAACCTACAGAGCATGGATATTGGAGAGCCAAAGGGGAGGCGTGTAGAATATTCTCGAACTCTTCCATGACTGGTTGGAGAGCTATTATTGAGTTCTATCAAGGCCAATCCCCTCATGAAAGTAAAACTAATTGGGTGATGCAAGAATACTGGATAACTCAGAAGAAGTTGTCTAAAGACAGCAAGCCAAAGACCAGGTTTATGCCTGAAATCGATTACGTTTCCAGAGATTCAAGTTGCTTGACTATGTCATCGGATGAGTGCTTCGATTCTCTGGCTTTGTTAGAAGAACTAGAGCCTAAAAATAGCCCATACTTGGTAAATAATAATGCAGGTTGCAAGTTCAGTATCTCTGCACCTCTAAGAGCAGATGAGTTGGTCATGTTTGCAGCCTCTTCAGGATCTTTCAGCAAGTCTCCAAGTGAAGAAAGAATCAAAACTCATTCTCCAATTCATGGTGCTGTTTGTGGCAAGATCTCAGGAAAGACTTCAAATAATATGAGCAGAATTCAGAAACCAGAGTATAGGAATGAAGGAGGCCCATCAACTTTTCATAATGTTGCAGTCTCACCCAGGAGGAAAAAGGAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

232

Amino Acids

26.26

Weight (kDa)

9.15

Isoelectric Point (pI)

59.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	425
AccB7I	CCANNNNNTGG	2 cut(s)	58, 557
AclWI	GGATC	2 cut(s)	42, 511
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	2 cut(s)	12, 483
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	58, 418, 557
AgsI	TTSAA	2 cut(s)	336, 594
AjnI	CCWGG	2 cut(s)	296, 674
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw26I	GTCTC	2 cut(s)	522, 673
AlwI	GGATC	2 cut(s)	42, 511
AoxI	GGCC	3 cut(s)	31, 205, 640
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	1 cut(s)	609
Asp700I	GAANNNNTTC	1 cut(s)	589
AspS9I	GGNCC	1 cut(s)	641
AsuHPI	GGTGA	2 cut(s)	250, 663
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	1 cut(s)	652
BceAI	ACGGC	1 cut(s)	18
BciT130I	CCWGG	2 cut(s)	298, 676
BcoDI	GTCTC	2 cut(s)	522, 673
BfaI	CTAG	2 cut(s)	395, 694
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	425
BglII	AGATCT	1 cut(s)	576
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
Bme1390I	CCNGG	2 cut(s)	298, 676
BmgT120I	GGNCC	1 cut(s)	641
BmrFI	CCNGG	2 cut(s)	298, 676
BmsI	GCATC	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	674
BsaXI	ACNNNNNCTCC	2 cut(s)	532, 562
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 418, 557
Bse1I	ACTGG	2 cut(s)	178, 257
BseBI	CCWGG	2 cut(s)	298, 676
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	674
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	3 cut(s)	58, 418, 557
BseMII	CTCAG	2 cut(s)	275, 594
BseNI	ACTGG	2 cut(s)	178, 257
BseXI	GCAGC	1 cut(s)	503
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	3 cut(s)	33, 207, 642
BshVI	ATCGAT	1 cut(s)	315
BslI	CCNNNNNNNGG	3 cut(s)	58, 418, 557
BsmAI	GTCTC	2 cut(s)	522, 673
BsnI	GGCC	3 cut(s)	33, 207, 642
Bsp143I	GATC	3 cut(s)	47, 503, 576
BspANI	GGCC	3 cut(s)	33, 207, 642
BspCNI	CTCAG	2 cut(s)	274, 593
BspDI	ATCGAT	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	2 cut(s)	42, 511
BsrI	ACTGG	2 cut(s)	178, 257
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	3 cut(s)	47, 503, 576
Bst2UI	CCWGG	2 cut(s)	298, 676
Bst6I	CTCTTC	2 cut(s)	169, 502
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	261, 464, 580
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	3 cut(s)	50, 506, 579
BstMAI	GTCTC	2 cut(s)	522, 673
BstMBI	GATC	3 cut(s)	47, 503, 576
BstNI	CCWGG	2 cut(s)	298, 676
BstSCI	CCNGG	2 cut(s)	296, 674
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	503
BstX2I	RGATCY	3 cut(s)	47, 503, 576
BstYI	RGATCY	3 cut(s)	47, 503, 576
Bsu15I	ATCGAT	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	33, 207, 642
BsuTUI	ATCGAT	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	364
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	1 cut(s)	287
CciI	TCATGA	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	641
ClaI	ATCGAT	1 cut(s)	315
CsiI	ACCWGGT	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	5 cut(s)	116, 169, 218, 484, 557
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	3 cut(s)	261, 464, 580
DpnI	GATC	3 cut(s)	49, 505, 578
DpnII	GATC	3 cut(s)	47, 503, 576
Eam1104I	CTCTTC	2 cut(s)	169, 502
EarI	CTCTTC	2 cut(s)	169, 502
Eco57I	CTGAAG	2 cut(s)	12, 483
EcoRI	GAATTC	1 cut(s)	609
EcoRII	CCWGG	2 cut(s)	296, 674
FaeI	CATG	5 cut(s)	119, 172, 221, 487, 560
FatI	CATG	5 cut(s)	115, 168, 217, 483, 556
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	1 cut(s)	492
FspBI	CTAG	2 cut(s)	395, 694
GluI	GCNGC	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	33, 207, 642
Hin1II	CATG	5 cut(s)	119, 172, 221, 487, 560
HinfI	GANTC	3 cut(s)	332, 371, 534
HphI	GGTGA	2 cut(s)	250, 663
Hpy188I	TCNGA	3 cut(s)	264, 358, 615
Hpy188III	TCNNGA	5 cut(s)	157, 218, 327, 501, 582
HpyAV	CCTTC	1 cut(s)	629
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	6 cut(s)	244, 434, 441, 458, 491, 665
HpyF3I	CTNAG	3 cut(s)	261, 464, 580
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	5 cut(s)	119, 172, 221, 487, 560
Kzo9I	GATC	3 cut(s)	47, 503, 576
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	1 cut(s)	231
MabI	ACCWGGT	1 cut(s)	296
MaeI	CTAG	2 cut(s)	395, 694
MaeII	ACGT	1 cut(s)	321
MalI	GATC	3 cut(s)	49, 505, 578
MboI	GATC	3 cut(s)	47, 503, 576
MboII	GAAGA	5 cut(s)	156, 277, 401, 489, 539
MflI	RGATCY	3 cut(s)	47, 503, 576
MluCI	AATT	4 cut(s)	6, 232, 552, 609
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	7 cut(s)	133, 225, 471, 505, 632, 672, 682
MroXI	GAANNNNTTC	1 cut(s)	589
MspR9I	CCNGG	2 cut(s)	298, 676
MvaI	CCWGG	2 cut(s)	298, 676
NdeII	GATC	3 cut(s)	47, 503, 576
NlaIII	CATG	5 cut(s)	119, 172, 221, 487, 560
PagI	TCATGA	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	589
PfeI	GAWTC	3 cut(s)	332, 371, 534
PflFI	GACNNNGTC	1 cut(s)	349
PflMI	CCANNNNNTGG	2 cut(s)	58, 557
PkrI	GCNGC	1 cut(s)	493
Psp6I	CCWGG	2 cut(s)	296, 674
PspGI	CCWGG	2 cut(s)	296, 674
PspPI	GGNCC	1 cut(s)	641
PsuI	RGATCY	3 cut(s)	47, 503, 576
PsyI	GACNNNGTC	1 cut(s)	349
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	3 cut(s)	47, 503, 576
Sau96I	GGNCC	1 cut(s)	641
ScrFI	CCNGG	2 cut(s)	298, 676
SetI	ASST	7 cut(s)	18, 109, 187, 302, 324, 439, 463
SexAI	ACCWGGT	1 cut(s)	296
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	108
Sse9I	AATT	4 cut(s)	6, 232, 552, 609
SspI	AATATT	1 cut(s)	153
SspMI	CTAG	2 cut(s)	395, 694
StyD4I	CCNGG	2 cut(s)	296, 674
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	3 cut(s)	158, 315, 369
TasI	AATT	4 cut(s)	6, 232, 552, 609
TfiI	GAWTC	3 cut(s)	332, 371, 534
TseI	GCWGC	1 cut(s)	491
TspDTI	ATGAA	5 cut(s)	73, 234, 545, 644, 648
Tth111I	GACNNNGTC	1 cut(s)	349
Van91I	CCANNNNNTGG	2 cut(s)	58, 557
XapI	RAATTY	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	589
XspI	CTAG	2 cut(s)	395, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.