Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Reverse (-)

59623589 .. 59626889

Gene Structure 3301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG409900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGATTCAGTAGTTAGCTATTGTACATTCCCTCTAATCAGACCCTATATATATGCAGGTAGTCTTTGGTACTTGATTTGCTCTAATGAAAGCAAAGATACAAATCTTGGATACTGGAGGCCCAAAGAGGAGGCATGTAAAATATTCTCAGACTCTACCATCACTGGTTGGAGAACTACCCTTGAATTCTATGAAGGCCGAGCACCTCATGAACGAAAAACCAATTGGGTAATGCAAGAATACTGGATAACTTACGAGAAAGTTTCCGAAAACAGCAAGATAAAGGAAGCCGGTTTGCTTTGCAGAGTCCAATCTATTGGTGCTGAACCGAAATCAAACTGCAAAAACCTCGAGAAAAAGGTTACTTCTGATGTTGCTAATCACTTCACACAACCAGTTGTTCCACTCGTGGAGAAACGTACTGGACACGCTTCCACAAGCAAGCCTCAGGTGATCAAGGATAATGAAACAGGAACGTTAACTGTTACAGAAAGGCTTCCAGATCATCAAATAGAATTCATGCCCGAGACTGAGAGAGATTTTCCTTTCGGAGATGACTACATAGAATTGCTGGATCTTGATAGACCAGCATCATTTTCTTCTAGTTCAGATTCAAGTTGCTTGACAATATCATCAGACGAATGCTTCGATTCCCTGGCTTTGTTGGAAGAACTAGAAACCAAAACTAGTCAAGACCGTGCAAATAAGAATGCAGGCTGCAAATTCAGTATTTCAGTATCTCAAAGACCAGATGAGTTGGTTATGTATGCAGCTGCCGCTTCCTCAGGATCTTTGAACAAATCTCCAAGTGAAGAAATGGTCAAAAGTCATTCTTCAGTTCCCAGTTCAACAGTCTGCGTTAAGAGTAAAGAAAAGACTACAATGAAACTGAGCAGAAATCAAAAACCAGACCAAAGGAATGAAGGTTTCTCGAATTCGCATACGACAACACCTCCAGCAGGAAAGAAGGCTACTGTTGTCAAAACTAAGAAGCTTAAGAAAAAGTATCTTTGCTGCTTGCCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

342

Amino Acids

38.39

Weight (kDa)

7.47

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	23 - 81	1e-08	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AciI	CCGC	1 cut(s)	777
AclI	AACGTT	1 cut(s)	476
AclWI	GGATC	2 cut(s)	582, 796
AcsI	RAATTY	4 cut(s)	185, 515, 722, 934
AcuI	CTGAAG	1 cut(s)	819
AfaI	GTAC	3 cut(s)	25, 71, 421
AfiI	CCNNNNNNNGG	1 cut(s)	959
AflII	CTTAAG	1 cut(s)	995
AgsI	TTSAA	4 cut(s)	185, 615, 796, 849
AhlI	ACTAGT	1 cut(s)	686
AjnI	CCWGG	1 cut(s)	654
AjuI	GAANNNNNNNTTGG	2 cut(s)	208, 240
AluBI	AGCT	3 cut(s)	18, 773, 994
AluI	AGCT	3 cut(s)	18, 773, 994
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	2 cut(s)	582, 796
Ama87I	CYCGRG	2 cut(s)	350, 524
AoxI	GGCC	2 cut(s)	119, 196
ApeKI	GCWGC	4 cut(s)	717, 770, 773, 1014
ApoI	RAATTY	4 cut(s)	185, 515, 722, 934
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
Asp700I	GAANNNNTTC	1 cut(s)	495
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	463
AvaI	CYCGRG	2 cut(s)	350, 524
AxyI	CCTNAGG	2 cut(s)	447, 784
BauI	CACGAG	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	4 cut(s)	704, 760, 782, 1001
BccI	CCATC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciT130I	CCWGG	1 cut(s)	656
BciVI	GTATCC	1 cut(s)	104
BclI	TGATCA	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	521
BcuI	ACTAGT	1 cut(s)	686
BfaI	CTAG	3 cut(s)	603, 674, 687
BfrI	CTTAAG	1 cut(s)	995
BfuAI	ACCTGC	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	104
BisI	GCNGC	5 cut(s)	718, 771, 774, 777, 1015
BlsI	GCNGC	5 cut(s)	719, 772, 775, 778, 1016
Bme1390I	CCNGG	1 cut(s)	656
BmeT110I	CYCGRG	2 cut(s)	350, 524
BmgT120I	GGNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	656
BmrI	ACTGGG	1 cut(s)	837
BmsI	GCATC	1 cut(s)	599
BmuI	ACTGGG	1 cut(s)	837
BpmI	CTGGAG	2 cut(s)	136, 939
BsaBI	GATNNNNATC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	654
BsaXI	ACNNNNNCTCC	2 cut(s)	937, 967
Bsc4I	CCNNNNNNNGG	1 cut(s)	959
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	6 cut(s)	119, 169, 248, 395, 427, 843
Bse21I	CCTNAGG	2 cut(s)	447, 784
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	656
BseDI	CCNNGG	1 cut(s)	654
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	959
BseMII	CTCAG	5 cut(s)	162, 461, 522, 798, 881
BseNI	ACTGG	6 cut(s)	119, 169, 248, 395, 427, 843
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	4 cut(s)	704, 760, 782, 1001
BshFI	GGCC	2 cut(s)	121, 198
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	2 cut(s)	350, 524
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	959
BsmAI	GTCTC	1 cut(s)	521
BsmI	GAATGC	2 cut(s)	647, 715
BsnI	GGCC	2 cut(s)	121, 198
BsoBI	CYCGRG	2 cut(s)	350, 524
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp1407I	TGTACA	1 cut(s)	23
Bsp143I	GATC	4 cut(s)	453, 502, 574, 788
BspACI	CCGC	1 cut(s)	777
BspANI	GGCC	2 cut(s)	121, 198
BspCNI	CTCAG	5 cut(s)	161, 460, 523, 797, 882
BspHI	TCATGA	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	2 cut(s)	582, 796
BspTI	CTTAAG	1 cut(s)	995
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	23
BsrI	ACTGG	6 cut(s)	119, 169, 248, 395, 427, 843
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	654
BssMI	GATC	4 cut(s)	453, 502, 574, 788
BssSI	CACGAG	1 cut(s)	407
Bst2BI	CACGAG	1 cut(s)	407
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	4 cut(s)	484, 698, 853, 976
BstAFI	CTTAAG	1 cut(s)	995
BstAUI	TGTACA	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	443, 715, 1019
BstDEI	CTNAG	6 cut(s)	148, 447, 531, 784, 890, 987
BstENI	CCTNNNNNAGG	1 cut(s)	957
BstKTI	GATC	4 cut(s)	456, 505, 577, 791
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	4 cut(s)	453, 502, 574, 788
BstMWI	GCNNNNNNNGC	1 cut(s)	776
BstNI	CCWGG	1 cut(s)	656
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	654
BstV1I	GCAGC	4 cut(s)	704, 760, 782, 1001
BstX2I	RGATCY	2 cut(s)	574, 788
BstXI	CCANNNNNNTGG	1 cut(s)	317
BstYI	RGATCY	2 cut(s)	574, 788
Bsu36I	CCTNAGG	2 cut(s)	447, 784
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	121, 198
BtsIMutI	CAGTG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	3 cut(s)	443, 715, 1019
CciI	TCATGA	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	120
Csp6I	GTAC	3 cut(s)	24, 70, 420
CviAII	CATG	4 cut(s)	135, 209, 520, 1023
CviQI	GTAC	3 cut(s)	24, 70, 420
DdeI	CTNAG	6 cut(s)	148, 447, 531, 784, 890, 987
DpnI	GATC	4 cut(s)	455, 504, 576, 790
DpnII	GATC	4 cut(s)	453, 502, 574, 788
Eco57I	CTGAAG	1 cut(s)	819
Eco81I	CCTNAGG	2 cut(s)	447, 784
Eco88I	CYCGRG	2 cut(s)	350, 524
EcoNI	CCTNNNNNAGG	1 cut(s)	957
EcoRI	GAATTC	3 cut(s)	185, 515, 934
EcoRII	CCWGG	1 cut(s)	654
FaeI	CATG	4 cut(s)	138, 212, 523, 1026
FalI	AAGNNNNNCTT	2 cut(s)	817, 849
FatI	CATG	4 cut(s)	134, 208, 519, 1022
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	5 cut(s)	718, 771, 774, 777, 1015
Fsp4HI	GCNGC	5 cut(s)	718, 771, 774, 777, 1015
FspBI	CTAG	3 cut(s)	603, 674, 687
GluI	GCNGC	5 cut(s)	718, 771, 774, 777, 1015
GsuI	CTGGAG	2 cut(s)	136, 939
HaeIII	GGCC	2 cut(s)	121, 198
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	4 cut(s)	138, 212, 523, 1026
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	992
HinfI	GANTC	5 cut(s)	5, 152, 306, 611, 650
HpaI	GTTAAC	1 cut(s)	480
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	7 cut(s)	41, 151, 268, 370, 551, 610, 637
Hpy188III	TCNNGA	7 cut(s)	209, 352, 500, 578, 692, 786, 931
Hpy8I	GTNNAC	1 cut(s)	480
HpyAV	CCTTC	3 cut(s)	188, 917, 961
HpyCH4III	ACNGT	4 cut(s)	484, 698, 853, 976
HpyCH4IV	ACGT	2 cut(s)	418, 476
HpyCH4V	TGCA	8 cut(s)	56, 235, 303, 342, 701, 713, 720, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	776
HpyF3I	CTNAG	6 cut(s)	148, 447, 531, 784, 890, 987
HpySE526I	ACGT	2 cut(s)	418, 476
Hsp92II	CATG	4 cut(s)	138, 212, 523, 1026
Ksp22I	TGATCA	1 cut(s)	453
KspAI	GTTAAC	1 cut(s)	480
Kzo9I	GATC	4 cut(s)	453, 502, 574, 788
Lsp1109I	GCAGC	4 cut(s)	704, 760, 782, 1001
LweI	GCATC	1 cut(s)	599
MaeI	CTAG	3 cut(s)	603, 674, 687
MaeII	ACGT	2 cut(s)	418, 476
MaeIII	GTNAC	2 cut(s)	361, 484
MalI	GATC	4 cut(s)	455, 504, 576, 790
MboI	GATC	4 cut(s)	453, 502, 574, 788
MboII	GAAGA	4 cut(s)	591, 680, 824, 825
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	2 cut(s)	574, 788
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	6 cut(s)	185, 223, 515, 566, 722, 934
MlyI	GAGTC	2 cut(s)	146, 315
MmeI	TCCRAC	2 cut(s)	149, 645
MnlI	CCTC	9 cut(s)	42, 111, 121, 124, 216, 359, 456, 793, 963
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	3 cut(s)	479, 861, 996
MspA1I	CMGCKG	1 cut(s)	773
MspCI	CTTAAG	1 cut(s)	995
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	656
MunI	CAATTG	1 cut(s)	223
Mva1269I	GAATGC	2 cut(s)	647, 715
MvaI	CCWGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	1 cut(s)	776
NdeII	GATC	4 cut(s)	453, 502, 574, 788
NlaIII	CATG	4 cut(s)	138, 212, 523, 1026
NmeAIII	GCCGAG	1 cut(s)	224
NspI	RCATGY	1 cut(s)	138
PaeR7I	CTCGAG	1 cut(s)	350
PagI	TCATGA	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PctI	GAATGC	2 cut(s)	647, 715
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	3 cut(s)	5, 611, 650
PkrI	GCNGC	5 cut(s)	719, 772, 775, 778, 1016
PleI	GAGTC	2 cut(s)	146, 314
PpsI	GAGTC	2 cut(s)	146, 314
Psp1406I	AACGTT	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	654
PspPI	GGNCC	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	574, 788
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	3 cut(s)	25, 71, 421
RsaNI	GTAC	3 cut(s)	24, 70, 420
SaqAI	TTAA	3 cut(s)	479, 861, 996
SatI	GCNGC	5 cut(s)	718, 771, 774, 777, 1015
Sau3AI	GATC	4 cut(s)	453, 502, 574, 788
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	2 cut(s)	146, 315
ScrFI	CCNGG	1 cut(s)	656
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	1 cut(s)	599
Sfr274I	CTCGAG	1 cut(s)	350
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	350, 995
SmoI	CTYRAG	2 cut(s)	350, 995
SpeI	ACTAGT	1 cut(s)	686
Sse9I	AATT	6 cut(s)	185, 223, 515, 566, 722, 934
SsiI	CCGC	1 cut(s)	777
SspI	AATATT	1 cut(s)	144
SspMI	CTAG	3 cut(s)	603, 674, 687
StyD4I	CCNGG	1 cut(s)	654
TaaI	ACNGT	4 cut(s)	484, 698, 853, 976
TaiI	ACGT	2 cut(s)	421, 479
TaqI	TCGA	3 cut(s)	351, 648, 932
TasI	AATT	6 cut(s)	185, 223, 515, 566, 722, 934
TatI	WGTACW	1 cut(s)	23
TauI	GCSGC	1 cut(s)	779
TfiI	GAWTC	3 cut(s)	5, 611, 650
Tru1I	TTAA	3 cut(s)	479, 861, 996
Tru9I	TTAA	3 cut(s)	479, 861, 996
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	4 cut(s)	717, 770, 773, 1014
TspDTI	ATGAA	7 cut(s)	102, 207, 225, 480, 508, 899, 936
TspRI	CASTG	1 cut(s)	169
Vha464I	CTTAAG	1 cut(s)	995
XagI	CCTNNNNNAGG	1 cut(s)	957
XapI	RAATTY	4 cut(s)	185, 515, 722, 934
XceI	RCATGY	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	3 cut(s)	603, 674, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.