Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001476.1

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Reverse (-)

80827 .. 86217

Gene Structure 5391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001476.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2079 bp

ctgttagtcagtcactgttcactagtgtccgggcagccctataaatatggggtggttagtccggagtccagaccctttagattagcgattaaggaagcagagactccccggtcgtcccaaaggccaaaagttaccatgcatccacaagctgcactcctgcctgctgatattggtcttcactgtaccgatgaggagctctgtatgtttacgtttttacataaacttataaatggatcaccacctccaacaaatgtgatcaatgatgtaaatccttaccaatacaagccctcaaatttaccacctggtagtctttggtacttgattcgctctaatgagagcaaagataataatcttggatactggaggcccaaagaggaggcatgtaaaatattcacagactctaccatcactggttggagaactacccttgaattctatgaacgccaagcaactcatgaacaaaaaaccaattgggtaatgcaagaatactggataacttacgagaaagtttccgaaaacagcaagataaaggaagccagtttgctttgcagagtccagtctattggtgctgaaccgaaatcaaactgcaaaaacctcaagaaaaaggttacttctgatgttgctaatcacttcacacaaccagttggtccactcgtggagaaacgtactggacacgcttcctcaagcaagcctcaggtgatcaaggataatgaaacaggaacgttaactgtgacagaaaggcttccagatcatcaaatagaaatcatgcccgagactgagatagattttcctttcggagatgactacatagaattgctggatcttgatagaccagcatcattttcttctagttcagattcaagttgcttgacaatatcatcagacgaatgcttcgattccctggctttgttggaagaactagaacccaaaactggtcaagaccgtgcaaataagaatgcaggctgcaaattcagtatttcagtatctcaaaaaccagatgagctggttatgtatgcagctgccgcttcctcaggatctttgaacaaatctccaagtgaagaaaggggtcggagagagttagaactagggttggagagagttaacaactatcctcagcctgtccggcggctcccccgcgtaggccgtggctccctgcttcatcgacgagtggcaggtgttgccggacgggatcttgggatctcaggggtccacctctgctgttcgcttggctggtcaaggtttggtacttctcttcgtttctttcatatggtatcgtcggtatggaggtcggatgggtggtggtcggcgtggtgtaagtggtcagaggccagatcatggcggcggtataccatggattgtatggcgctgacttctaatctacggtgggtcgctagacggagatggcagctatggtggatctgggttttcaaggtgataggcatggcagaggcaaggtacactgagtctttcatcgatttattggtgatagatttgttgtggtttgctgtatggtttagcaggcaccttcgacttggggagattgaagacatggggctgaggtggtggcctgccggtgggtcatctgacgacaagggtgaggagtactgtggcggcgacttttttcttttggttaaagtcttggttttagttaggttgcttgttagtttactttggttgttggttagtttactttggtcaatagttggtccctactcgtttgagctagggttgggtcagattgatgtgtcatggatgtggtgtctttcctggggacgagttggtgtaatttcggttttatcttatggtcaatgtgctaacaggcgatccttgcacgtgatttggtttcattggaacgcggtgtggaagagggcgctggtttctctggcggttgtctatggggtgttatcgagtttctcagggttatctgtagcttgtgaggttgggcgaaataggtggttaggggttgggctcttttggctcatggatgtcattctggatgacggacccgtaactagttcagtttttatggaggagagtggggaattcttgtccaccaccggtcatttccatattatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

692

Amino Acids

78.63

Weight (kDa)

7.02

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AarI	CACCTGC	1 cut(s)	1163
AasI	GACNNNNNNGTC	1 cut(s)	109
Acc36I	ACCTGC	1 cut(s)	1163
AccB1I	GGYRCC	1 cut(s)	1521
AccB7I	CCANNNNNTGG	1 cut(s)	1335
AccI	GTMKAC	1 cut(s)	1346
AccII	CGCG	2 cut(s)	1137, 1856
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	8 cut(s)	1023, 1126, 1135, 1339, 1342, 1611, 1856, 1886
AclI	AACGTT	1 cut(s)	722
AclWI	GGATC	7 cut(s)	241, 828, 1042, 1197, 1205, 1424, 1818
AcsI	RAATTY	4 cut(s)	292, 431, 968, 2042
AcvI	CACGTG	1 cut(s)	1834
AfaI	GTAC	6 cut(s)	184, 317, 667, 1246, 1457, 1604
AfiI	CCNNNNNNNGG	4 cut(s)	932, 1139, 1335, 1574
AgeI	ACCGGT	1 cut(s)	2057
AgsI	TTSAA	5 cut(s)	431, 861, 1042, 1429, 1544
AhlI	ACTAGT	2 cut(s)	22, 2012
AjnI	CCWGG	3 cut(s)	301, 900, 1766
AluBI	AGCT	7 cut(s)	149, 196, 1003, 1019, 1408, 1723, 1931
AluI	AGCT	7 cut(s)	149, 196, 1003, 1019, 1408, 1723, 1931
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	2 cut(s)	95, 767
AlwI	GGATC	7 cut(s)	241, 828, 1042, 1197, 1205, 1424, 1818
AlwNI	CAGNNNCTG	1 cut(s)	15
Ama87I	CYCGRG	1 cut(s)	770
Aor13HI	TCCGGA	1 cut(s)	61
AoxI	GGCC	5 cut(s)	122, 365, 1141, 1326, 1565
ApeKI	GCWGC	6 cut(s)	34, 149, 963, 1016, 1019, 1405
ApoI	RAATTY	4 cut(s)	292, 431, 968, 2042
ArsI	GACNNNNNNTTYG	2 cut(s)	875, 907
AsiGI	ACCGGT	1 cut(s)	2057
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	2 cut(s)	1366, 1873
AspS9I	GGNCC	5 cut(s)	366, 647, 1207, 1706, 2003
AsuC2I	CCSGG	2 cut(s)	31, 109
AsuHPI	GGTGA	5 cut(s)	228, 709, 1444, 1495, 1607
AvaI	CYCGRG	1 cut(s)	770
AvaII	GGWCC	4 cut(s)	647, 1207, 1706, 2003
AxyI	CCTNAGG	2 cut(s)	693, 1030
BanI	GGYRCC	1 cut(s)	1521
BanII	GRGCYC	2 cut(s)	198, 1971
BauI	CACGAG	1 cut(s)	653
BbrPI	CACGTG	1 cut(s)	1834
BbsI	GAAGAC	2 cut(s)	167, 1551
Bbv12I	GWGCWC	1 cut(s)	198
BbvCI	CCTCAGC	2 cut(s)	1113, 1556
BbvI	GCAGC	6 cut(s)	46, 136, 950, 1006, 1028, 1417
BccI	CCATC	3 cut(s)	413, 1286, 1395
BceAI	ACGGC	1 cut(s)	1128
BciT130I	CCWGG	3 cut(s)	303, 902, 1768
BciVI	GTATCC	1 cut(s)	350
BclI	TGATCA	2 cut(s)	255, 699
BcnI	CCSGG	2 cut(s)	31, 109
BcoDI	GTCTC	2 cut(s)	95, 767
BcuI	ACTAGT	2 cut(s)	22, 2012
BfaI	CTAG	7 cut(s)	23, 849, 920, 1085, 1392, 1724, 2013
BfmI	CTRYAG	1 cut(s)	1926
BfoI	RGCGCY	2 cut(s)	1367, 1874
BfuAI	ACCTGC	1 cut(s)	1163
BfuI	GTATCC	1 cut(s)	350
BglI	GCCNNNNNGGC	1 cut(s)	1123
BmcAI	AGTACT	1 cut(s)	1604
Bme1390I	CCNGG	5 cut(s)	31, 109, 303, 902, 1768
Bme18I	GGWCC	4 cut(s)	647, 1207, 1706, 2003
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	5 cut(s)	366, 647, 1207, 1706, 2003
BmiI	GGNNCC	6 cut(s)	1130, 1150, 1208, 1523, 1708, 2005
BmrFI	CCNGG	5 cut(s)	31, 109, 303, 902, 1768
BmsI	GCATC	2 cut(s)	148, 845
BpiI	GAAGAC	2 cut(s)	167, 1551
BpmI	CTGGAG	1 cut(s)	382
Bpu10I	CCTNAGC	2 cut(s)	1113, 1556
BpuEI	CTTGAG	2 cut(s)	581, 667
BpuMI	CCSGG	2 cut(s)	31, 109
Bsa29I	ATCGAT	1 cut(s)	1473
BsaAI	YACGTR	1 cut(s)	1834
BsaBI	GATNNNNATC	2 cut(s)	267, 348
BsaJI	CCNNGG	5 cut(s)	107, 900, 1144, 1350, 1767
BsaWI	WCCGGW	2 cut(s)	61, 2057
Bsc4I	CCNNNNNNNGG	4 cut(s)	932, 1139, 1335, 1574
Bse118I	RCCGGY	2 cut(s)	1571, 2057
Bse1I	ACTGG	8 cut(s)	365, 415, 494, 537, 556, 641, 673, 937
Bse21I	CCTNAGG	2 cut(s)	693, 1030
Bse8I	GATNNNNATC	2 cut(s)	267, 348
BseAI	TCCGGA	1 cut(s)	61
BseBI	CCWGG	3 cut(s)	303, 902, 1768
BseCI	ATCGAT	1 cut(s)	1473
BseDI	CCNNGG	5 cut(s)	107, 900, 1144, 1350, 1767
BseGI	GGATG	5 cut(s)	139, 1297, 1758, 1990, 2002
BseJI	GATNNNNATC	2 cut(s)	267, 348
BseLI	CCNNNNNNNGG	4 cut(s)	932, 1139, 1335, 1574
BseMII	CTCAG	8 cut(s)	707, 768, 1044, 1127, 1215, 1452, 1547, 1929
BseNI	ACTGG	8 cut(s)	365, 415, 494, 537, 556, 641, 673, 937
BseRI	GAGGAG	4 cut(s)	206, 389, 1613, 2045
BseXI	GCAGC	6 cut(s)	46, 136, 950, 1006, 1028, 1417
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	2 cut(s)	1137, 1856
Bsh1285I	CGRYCG	1 cut(s)	113
BshFI	GGCC	5 cut(s)	124, 367, 1143, 1328, 1567
BshNI	GGYRCC	1 cut(s)	1521
BshTI	ACCGGT	1 cut(s)	2057
BshVI	ATCGAT	1 cut(s)	1473
BsiEI	CGRYCG	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	770
BsiSI	CCGG	7 cut(s)	30, 62, 109, 1123, 1182, 1572, 2058
BslFI	GGGAC	3 cut(s)	100, 1692, 1785
BslI	CCNNNNNNNGG	4 cut(s)	932, 1139, 1335, 1574
BsmAI	GTCTC	2 cut(s)	95, 767
BsmFI	GGGAC	3 cut(s)	100, 1692, 1785
BsmI	GAATGC	2 cut(s)	893, 961
BsnI	GGCC	5 cut(s)	124, 367, 1143, 1328, 1567
BsoBI	CYCGRG	1 cut(s)	770
Bsp1286I	GDGCHC	2 cut(s)	198, 1971
Bsp13I	TCCGGA	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	1350
BspACI	CCGC	8 cut(s)	1023, 1126, 1135, 1339, 1342, 1611, 1856, 1886
BspANI	GGCC	5 cut(s)	124, 367, 1143, 1328, 1567
BspCNI	CTCAG	8 cut(s)	706, 769, 1043, 1126, 1214, 1453, 1548, 1928
BspDI	ATCGAT	1 cut(s)	1473
BspEI	TCCGGA	1 cut(s)	61
BspFNI	CGCG	2 cut(s)	1137, 1856
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	6 cut(s)	1130, 1150, 1208, 1523, 1708, 2005
BspMI	ACCTGC	1 cut(s)	1163
BspPI	GGATC	7 cut(s)	241, 828, 1042, 1197, 1205, 1424, 1818
BspT107I	GGYRCC	1 cut(s)	1521
BsrFI	RCCGGY	2 cut(s)	1571, 2057
BsrI	ACTGG	8 cut(s)	365, 415, 494, 537, 556, 641, 673, 937
BssAI	RCCGGY	2 cut(s)	1571, 2057
BssECI	CCNNGG	5 cut(s)	107, 900, 1144, 1350, 1767
BssNAI	GTATAC	1 cut(s)	1347
BssSI	CACGAG	1 cut(s)	653
BssT1I	CCWWGG	1 cut(s)	1350
Bst1107I	GTATAC	1 cut(s)	1347
Bst2BI	CACGAG	1 cut(s)	653
Bst2UI	CCWGG	3 cut(s)	303, 902, 1768
Bst4CI	ACNGT	6 cut(s)	17, 182, 730, 944, 1383, 1607
Bst6I	CTCTTC	2 cut(s)	1257, 1859
BstAPI	GCANNNNNTGC	1 cut(s)	1178
BstBAI	YACGTR	1 cut(s)	1834
BstC8I	GCNNGC	5 cut(s)	162, 689, 961, 1520, 1569
BstDEI	CTNAG	8 cut(s)	693, 777, 1030, 1113, 1201, 1461, 1556, 1915
BstDSI	CCRYGG	2 cut(s)	1144, 1350
BstF5I	GGATG	5 cut(s)	139, 1297, 1758, 1990, 2002
BstFNI	CGCG	2 cut(s)	1137, 1856
BstH2I	RGCGCY	2 cut(s)	1367, 1874
BstHHI	GCGC	2 cut(s)	1366, 1873
BstMAI	GTCTC	2 cut(s)	95, 767
BstMCI	CGRYCG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	5 cut(s)	1022, 1123, 1178, 1828, 1975
BstNI	CCWGG	3 cut(s)	303, 902, 1768
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	5 cut(s)	29, 107, 301, 900, 1766
BstSFI	CTRYAG	1 cut(s)	1926
BstUI	CGCG	2 cut(s)	1137, 1856
BstV1I	GCAGC	6 cut(s)	46, 136, 950, 1006, 1028, 1417
BstV2I	GAAGAC	2 cut(s)	167, 1551
BstX2I	RGATCY	5 cut(s)	820, 1034, 1189, 1197, 1416
BstXI	CCANNNNNNTGG	1 cut(s)	563
BstYI	RGATCY	5 cut(s)	820, 1034, 1189, 1197, 1416
BstZ17I	GTATAC	1 cut(s)	1347
Bsu15I	ATCGAT	1 cut(s)	1473
Bsu36I	CCTNAGG	2 cut(s)	693, 1030
BsuI	GTATCC	1 cut(s)	350
BsuRI	GGCC	5 cut(s)	124, 367, 1143, 1328, 1567
BsuTUI	ATCGAT	1 cut(s)	1473
BtgI	CCRYGG	2 cut(s)	1144, 1350
BtsCI	GGATG	5 cut(s)	139, 1297, 1758, 1990, 2002
BtsIMutI	CAGTG	4 cut(s)	13, 178, 408, 1458
BveI	ACCTGC	1 cut(s)	1163
Cac8I	GCNNGC	5 cut(s)	162, 689, 961, 1520, 1569
CaiI	CAGNNNCTG	1 cut(s)	15
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	2 cut(s)	1366, 1873
Cfr10I	RCCGGY	2 cut(s)	1571, 2057
Cfr13I	GGNCC	5 cut(s)	366, 647, 1207, 1706, 2003
ClaI	ATCGAT	1 cut(s)	1473
CsiI	ACCWGGT	1 cut(s)	301
Csp6I	GTAC	6 cut(s)	183, 316, 666, 1245, 1456, 1603
CspAI	ACCGGT	1 cut(s)	2057
CviQI	GTAC	6 cut(s)	183, 316, 666, 1245, 1456, 1603
DdeI	CTNAG	8 cut(s)	693, 777, 1030, 1113, 1201, 1461, 1556, 1915
DrdI	GACNNNNNNGTC	1 cut(s)	109
DseDI	GACNNNNNNGTC	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	1257, 1859
EarI	CTCTTC	2 cut(s)	1257, 1859
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	1350
Eco24I	GRGCYC	2 cut(s)	198, 1971
Eco47I	GGWCC	4 cut(s)	647, 1207, 1706, 2003
Eco53kI	GAGCTC	1 cut(s)	196
Eco72I	CACGTG	1 cut(s)	1834
Eco81I	CCTNAGG	2 cut(s)	693, 1030
Eco88I	CYCGRG	1 cut(s)	770
EcoICRI	GAGCTC	1 cut(s)	196
EcoRI	GAATTC	2 cut(s)	431, 2042
EcoRII	CCWGG	3 cut(s)	301, 900, 1766
EcoT14I	CCWWGG	1 cut(s)	1350
EcoT22I	ATGCAT	1 cut(s)	141
EcoT38I	GRGCYC	2 cut(s)	198, 1971
ErhI	CCWWGG	1 cut(s)	1350
FaqI	GGGAC	3 cut(s)	100, 1692, 1785
FauI	CCCGC	1 cut(s)	1142
FauNDI	CATATG	1 cut(s)	1266
FbaI	TGATCA	2 cut(s)	255, 699
FblI	GTMKAC	1 cut(s)	1346
FokI	GGATG	5 cut(s)	126, 1304, 1765, 1997, 2009
FriOI	GRGCYC	2 cut(s)	198, 1971
FspBI	CTAG	7 cut(s)	23, 849, 920, 1085, 1392, 1724, 2013
GlaI	GCGC	2 cut(s)	1365, 1872
GsuI	CTGGAG	1 cut(s)	382
HaeII	RGCGCY	2 cut(s)	1367, 1874
HaeIII	GGCC	5 cut(s)	124, 367, 1143, 1328, 1567
HapII	CCGG	7 cut(s)	30, 62, 109, 1123, 1182, 1572, 2058
HhaI	GCGC	2 cut(s)	1366, 1873
Hin6I	GCGC	2 cut(s)	1364, 1871
HinP1I	GCGC	2 cut(s)	1364, 1871
HincII	GTYRAC	2 cut(s)	726, 1102
HindII	GTYRAC	2 cut(s)	726, 1102
HinfI	GANTC	8 cut(s)	65, 103, 322, 398, 552, 857, 896, 1463
HpaI	GTTAAC	2 cut(s)	726, 1102
HpaII	CCGG	7 cut(s)	30, 62, 109, 1123, 1182, 1572, 2058
HphI	GGTGA	5 cut(s)	228, 709, 1444, 1495, 1607
Hpy188III	TCNNGA	9 cut(s)	62, 69, 455, 598, 746, 824, 938, 1032, 1994
Hpy99I	CGWCG	2 cut(s)	1167, 1279
HpyAV	CCTTC	1 cut(s)	1535
HpyCH4III	ACNGT	6 cut(s)	17, 182, 730, 944, 1383, 1607
HpyCH4IV	ACGT	4 cut(s)	209, 664, 722, 1833
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1022, 1123, 1178, 1828, 1975
HpyF3I	CTNAG	8 cut(s)	693, 777, 1030, 1113, 1201, 1461, 1556, 1915
HpySE526I	ACGT	4 cut(s)	209, 664, 722, 1833
HspAI	GCGC	2 cut(s)	1364, 1871
Kpn2I	TCCGGA	1 cut(s)	61
Ksp22I	TGATCA	2 cut(s)	255, 699
KspAI	GTTAAC	2 cut(s)	726, 1102
LmnI	GCTCC	3 cut(s)	193, 1134, 1154
Lsp1109I	GCAGC	6 cut(s)	46, 136, 950, 1006, 1028, 1417
LweI	GCATC	2 cut(s)	148, 845
MabI	ACCWGGT	1 cut(s)	301
MaeI	CTAG	7 cut(s)	23, 849, 920, 1085, 1392, 1724, 2013
MaeII	ACGT	4 cut(s)	209, 664, 722, 1833
MaeIII	GTNAC	5 cut(s)	11, 130, 607, 730, 2008
MboII	GAAGA	7 cut(s)	167, 837, 926, 1070, 1244, 1556, 1876
MfeI	CAATTG	1 cut(s)	469
MflI	RGATCY	5 cut(s)	820, 1034, 1189, 1197, 1416
MhlI	GDGCHC	2 cut(s)	198, 1971
MluCI	AATT	7 cut(s)	292, 431, 469, 812, 968, 1785, 2042
MlyI	GAGTC	5 cut(s)	74, 97, 392, 561, 1472
MmeI	TCCRAC	6 cut(s)	269, 395, 891, 1049, 1071, 1269
Mph1103I	ATGCAT	1 cut(s)	141
MroI	TCCGGA	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	741
MseI	TTAA	4 cut(s)	90, 725, 1101, 1632
MslI	CAYNNNNRTG	1 cut(s)	1753
MspA1I	CMGCKG	1 cut(s)	1019
MspI	CCGG	7 cut(s)	30, 62, 109, 1123, 1182, 1572, 2058
MspR9I	CCNGG	5 cut(s)	31, 109, 303, 902, 1768
MunI	CAATTG	1 cut(s)	469
Mva1269I	GAATGC	2 cut(s)	893, 961
MvaI	CCWGG	3 cut(s)	303, 902, 1768
MvnI	CGCG	2 cut(s)	1137, 1856
MwoI	GCNNNNNNNGC	5 cut(s)	1022, 1123, 1178, 1828, 1975
NciI	CCSGG	2 cut(s)	31, 109
NcoI	CCATGG	1 cut(s)	1350
NdeI	CATATG	1 cut(s)	1266
NlaIV	GGNNCC	6 cut(s)	1130, 1150, 1208, 1523, 1708, 2005
NmuCI	GTSAC	2 cut(s)	11, 730
NsiI	ATGCAT	1 cut(s)	141
NspI	RCATGY	1 cut(s)	384
PagI	TCATGA	1 cut(s)	454
PaqCI	CACCTGC	1 cut(s)	1163
PcsI	WCGNNNNNNNCGW	1 cut(s)	891
PctI	GAATGC	2 cut(s)	893, 961
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	3 cut(s)	322, 857, 896
PflMI	CCANNNNNTGG	1 cut(s)	1335
PinAI	ACCGGT	1 cut(s)	2057
PleI	GAGTC	5 cut(s)	73, 97, 392, 560, 1471
PmaCI	CACGTG	1 cut(s)	1834
PmlI	CACGTG	1 cut(s)	1834
PpsI	GAGTC	5 cut(s)	73, 97, 392, 560, 1471
Ppu21I	YACGTR	1 cut(s)	1834
PsiI	TTATAA	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	198
Psp1406I	AACGTT	1 cut(s)	722
Psp6I	CCWGG	3 cut(s)	301, 900, 1766
PspCI	CACGTG	1 cut(s)	1834
PspGI	CCWGG	3 cut(s)	301, 900, 1766
PspN4I	GGNNCC	6 cut(s)	1130, 1150, 1208, 1523, 1708, 2005
PspPI	GGNCC	5 cut(s)	366, 647, 1207, 1706, 2003
PstNI	CAGNNNCTG	1 cut(s)	15
PsuI	RGATCY	5 cut(s)	820, 1034, 1189, 1197, 1416
PvuII	CAGCTG	1 cut(s)	1019
RsaI	GTAC	6 cut(s)	184, 317, 667, 1246, 1457, 1604
RsaNI	GTAC	6 cut(s)	183, 316, 666, 1245, 1456, 1603
RseI	CAYNNNNRTG	1 cut(s)	1753
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	4 cut(s)	90, 725, 1101, 1632
Sau96I	GGNCC	5 cut(s)	366, 647, 1207, 1706, 2003
ScaI	AGTACT	1 cut(s)	1604
SchI	GAGTC	5 cut(s)	74, 97, 392, 561, 1472
ScrFI	CCNGG	5 cut(s)	31, 109, 303, 902, 1768
SduI	GDGCHC	2 cut(s)	198, 1971
SexAI	ACCWGGT	1 cut(s)	301
SfaNI	GCATC	2 cut(s)	148, 845
SfcI	CTRYAG	1 cut(s)	1926
SinI	GGWCC	4 cut(s)	647, 1207, 1706, 2003
SmiMI	CAYNNNNRTG	1 cut(s)	1753
SmlI	CTYRAG	2 cut(s)	596, 682
SmoI	CTYRAG	2 cut(s)	596, 682
SpeI	ACTAGT	2 cut(s)	22, 2012
Sse9I	AATT	7 cut(s)	292, 431, 469, 812, 968, 1785, 2042
SsiI	CCGC	8 cut(s)	1023, 1126, 1135, 1339, 1342, 1611, 1856, 1886
SspI	AATATT	1 cut(s)	390
SspMI	CTAG	7 cut(s)	23, 849, 920, 1085, 1392, 1724, 2013
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	5 cut(s)	29, 107, 301, 900, 1766
StyI	CCWWGG	1 cut(s)	1350
TaaI	ACNGT	6 cut(s)	17, 182, 730, 944, 1383, 1607
TaiI	ACGT	4 cut(s)	212, 667, 725, 1836
TaqI	TCGA	5 cut(s)	894, 1162, 1473, 1528, 1907
TasI	AATT	7 cut(s)	292, 431, 469, 812, 968, 1785, 2042
TatI	WGTACW	1 cut(s)	1602
TauI	GCSGC	4 cut(s)	1025, 1129, 1342, 1614
TfiI	GAWTC	3 cut(s)	322, 857, 896
Tru1I	TTAA	4 cut(s)	90, 725, 1101, 1632
Tru9I	TTAA	4 cut(s)	90, 725, 1101, 1632
TscAI	CASTG	4 cut(s)	20, 185, 415, 1465
TseFI	GTSAC	2 cut(s)	11, 730
TseI	GCWGC	6 cut(s)	34, 149, 963, 1016, 1019, 1405
Tsp45I	GTSAC	2 cut(s)	11, 730
TspDTI	ATGAA	7 cut(s)	453, 471, 726, 1148, 1253, 1459, 1835
TspGWI	ACGGA	2 cut(s)	1411, 2016
TspRI	CASTG	4 cut(s)	20, 185, 415, 1465
Van91I	CCANNNNNTGG	1 cut(s)	1335
VpaK11BI	GGWCC	4 cut(s)	647, 1207, 1706, 2003
XapI	RAATTY	4 cut(s)	292, 431, 968, 2042
XceI	RCATGY	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1357
XmiI	GTMKAC	1 cut(s)	1346
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	7 cut(s)	23, 849, 920, 1085, 1392, 1724, 2013
ZrmI	AGTACT	1 cut(s)	1604
Zsp2I	ATGCAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.