RchiOBHm_Chr4g0414451

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005177
Physical Location & Seq
Reverse (-)
38938322 .. 38939021
700 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38486

Sequence Viewer

Length: 441 bp
ATGGCATCGTCGGTGTGGAGGTCGGATGGGTGGTGGTCGGCGTGGAGTATGTGGTCAGAGGCCAGATCATGGCGGCGGTATACCATGGATCGTATGGCGCTGACTTCTAATCTACGGTGGGTCGCTAGACGGAGATGGCAGCTGTGGTGGAACTGGGTTTTCAAGGTGGTGGGCATGGCAGAGGCAAGGCACAGTGAGTCTTTCATCGATTTCTTGTTGATAGATTGGCTGTGGTTTGCTGTATGGTTTAGCAGGCACCTTCGACTTGGGGAGATTGAAGACATGAGGCTACGGTGGTGGATTGCCGGCGAGTCATCTGACGACAAGGGTGAGGAGTACTGTGGCGGCGACTTCTTTCCTTTGGTTAAAGTCTTGTTTTTAGGTTGGGTCAAATTGATGTGCCATGGATGTGGTGTCTTTCCTGGGGACGAGTTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

17.65

Weight (kDa)

6.83

Isoelectric Point (pI)

65.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 255
AccB7I CCANNNNNTGG 1 cut(s) 69
AccI GTMKAC 1 cut(s) 80
AciI CCGC 3 cut(s) 73, 76, 345
AclWI GGATC 1 cut(s) 96
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 2 cut(s) 163, 278
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
AlwI GGATC 1 cut(s) 96
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 341
BanI GGYRCC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 151
BccI CCATC 2 cut(s) 20, 129
BciT130I CCWGG 1 cut(s) 423
BfaI CTAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 101
BisI GCNGC 3 cut(s) 74, 140, 346
BlsI GCNGC 3 cut(s) 75, 141, 347
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 423
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 423
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 285
Bsa29I ATCGAT 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 84, 403, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 423
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 3 cut(s) 84, 403, 422
BseGI GGATG 2 cut(s) 31, 413
BseLI CCNNNNNNNGG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 151
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 255
BshVI ATCGAT 1 cut(s) 207
BsiSI CCGG 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 69
BsnI GGCC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 65, 88
Bsp19I CCATGG 2 cut(s) 84, 403
BspACI CCGC 3 cut(s) 73, 76, 345
BspANI GGCC 1 cut(s) 62
BspDI ATCGAT 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 257
BspPI GGATC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 305
BsrI ACTGG 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 3 cut(s) 84, 403, 422
BssMI GATC 2 cut(s) 65, 88
BssNAI GTATAC 1 cut(s) 81
BssT1I CCWWGG 2 cut(s) 84, 403
Bst1107I GTATAC 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 4 cut(s) 117, 194, 294, 341
BstC8I GCNNGC 2 cut(s) 254, 307
BstDSI CCRYGG 2 cut(s) 84, 403
BstF5I GGATG 2 cut(s) 31, 413
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 2 cut(s) 68, 91
BstMBI GATC 2 cut(s) 65, 88
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 285
BstXI CCANNNNNNTGG 1 cut(s) 410
BstZ17I GTATAC 1 cut(s) 81
Bsu15I ATCGAT 1 cut(s) 207
BsuRI GGCC 1 cut(s) 62
BsuTUI ATCGAT 1 cut(s) 207
BtgI CCRYGG 2 cut(s) 84, 403
BtsCI GGATG 2 cut(s) 31, 413
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 2 cut(s) 254, 307
CfoI GCGC 1 cut(s) 100
Cfr10I RCCGGY 1 cut(s) 305
ClaI ATCGAT 1 cut(s) 207
Csp6I GTAC 1 cut(s) 337
CviAII CATG 5 cut(s) 69, 85, 175, 283, 404
CviJI RGCY 4 cut(s) 62, 142, 229, 289
CviKI_1 RGCY 4 cut(s) 62, 142, 229, 289
CviQI GTAC 1 cut(s) 337
DpnI GATC 2 cut(s) 67, 90
DpnII GATC 2 cut(s) 65, 88
Eco130I CCWWGG 2 cut(s) 84, 403
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 2 cut(s) 84, 403
ErhI CCWWGG 2 cut(s) 84, 403
FaeI CATG 5 cut(s) 72, 88, 178, 286, 407
FaiI YATR 9 cut(s) 50, 70, 81, 86, 95, 176, 244, 284, 405
FatI CATG 5 cut(s) 68, 84, 174, 282, 403
FblI GTMKAC 1 cut(s) 80
Fnu4HI GCNGC 3 cut(s) 74, 140, 346
FokI GGATG 2 cut(s) 38, 420
Fsp4HI GCNGC 3 cut(s) 74, 140, 346
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 99
GluI GCNGC 3 cut(s) 74, 140, 346
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 306
HhaI GCGC 1 cut(s) 100
Hin1II CATG 5 cut(s) 72, 88, 178, 286, 407
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 2 cut(s) 197, 311
HpaII CCGG 1 cut(s) 306
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 3 cut(s) 25, 58, 319
Hpy8I GTNNAC 1 cut(s) 81
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 4 cut(s) 117, 194, 294, 341
Hsp92II CATG 5 cut(s) 72, 88, 178, 286, 407
HspAI GCGC 1 cut(s) 98
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 65, 88
LpnPI CCDG 6 cut(s) 76, 139, 238, 319, 408, 435
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 126
MalI GATC 2 cut(s) 67, 90
MboI GATC 2 cut(s) 65, 88
MboII GAAGA 1 cut(s) 290
MluCI AATT 1 cut(s) 392
MlyI GAGTC 2 cut(s) 206, 320
MnlI CCTC 5 cut(s) 12, 52, 175, 279, 325
MroNI GCCGGC 1 cut(s) 305
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 423
NaeI GCCGGC 1 cut(s) 307
NcoI CCATGG 2 cut(s) 84, 403
NdeII GATC 2 cut(s) 65, 88
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 5 cut(s) 72, 88, 178, 286, 407
NlaIV GGNNCC 1 cut(s) 257
PdiI GCCGGC 1 cut(s) 307
PflMI CCANNNNNTGG 1 cut(s) 69
PkrI GCNGC 3 cut(s) 75, 141, 347
PleI GAGTC 2 cut(s) 205, 319
PpsI GAGTC 2 cut(s) 205, 319
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 142
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 3 cut(s) 74, 140, 346
Sau3AI GATC 2 cut(s) 65, 88
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 2 cut(s) 206, 320
ScrFI CCNGG 1 cut(s) 423
SetI ASST 5 cut(s) 23, 144, 168, 261, 385
SfaNI GCATC 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 1 cut(s) 392
SsiI CCGC 3 cut(s) 73, 76, 345
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 2 cut(s) 84, 403
TaaI ACNGT 4 cut(s) 117, 194, 294, 341
TaqI TCGA 2 cut(s) 207, 262
TasI AATT 1 cut(s) 392
TatI WGTACW 1 cut(s) 336
TauI GCSGC 2 cut(s) 76, 348
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 1 cut(s) 199
TseI GCWGC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 193
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 80
XspI CTAG 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.