Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Forward (+)

8743708 .. 8746641

Gene Structure 2934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGTTAAACTCACCTCAGTCTTTGTCAGTCAGTCACTGTTCACTGTGTCCGGGCAGCCCTATAAATATGGGGTGGTTAGTCCAGACTCCTTTAGATTAGCGATTAAGGAAGCAGAGACTCCCCGGTCGTCCCAATTCCCAAAGGCCAAAAGAATAGCTTTGAGTTTGAAGGAGCTTGTTCGGATTACCATGCATCCACAAGCTGCAGTCCTGCCTGCTGATATTGGTCTTCACTGTACCAGTGAGGAGCTCTGTAGTCTTTGGTACTTGATTCGCTCTAATGAGAGCAAAGATACAAATCTTGGATACTGGAGGCCCAAAGAGGAGGCATGTAAAATATTCTCAGACTTTACCATCACTGGTTGGAGAACTACCCTTGAATTCTATGAAGGCCGAGCACCTCATGAACAAAAAACCAATTGGGTAATGCAAGAATACTGGATAACTTACAAGAAAGTTTCCGAAGACAGCAAGATAAAGGAAGCCAGTTTGCTTTGCAGAGTCCAATCTATTGGTGCTGAACCGAAATCAAACTGCAAAAACCTCGAGAAAAAGGTTACTTCTGATGTTGCTAATCACTTCACACAACCAGTTGTTCCACTCGTGGAGAAACGTACTGGACACGCTTCCACAAGCAAGCCTCAGGTGATCAAGGATAATGAAACTGGAACGTTAACTGTTACAGAAAGGCTTCCAGATCATCAAATAGAAATCATGCCCGAGACTGAGATAGATTTTCCTTTCGGAGATGACTACATAGAATTGCTGGATCTTGATAGACCAGCATCATTTTCTTCTAGTTCAGATTCAAGTTGCTTGACAATATCATCAGATGAATGCTTTGATTCCCTGGCTTTGTTGGAAGAACTAGAACCCAAAACTTGTCAAGACCATGCAAATAAGAATGCAGGCTGCAAATTCAGTATTTCTGTATCTCAAAAGCCAGATGAGTTGGTTATGTATGCAGCTGCCGCTTCCTCAGGATCTTTGAACAAATCTCCAACTGAAGAAAGGGTCAAAAGTCATTCTTCAATTCCCAGTTCAACAGTCTGCGTTAACAGTCAAGACAAGACTACAAAGAAACTCAGCAGAAATCCAAAACCAGACCAGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

372

Amino Acids

41.63

Weight (kDa)

5.99

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	95 - 146	1.3e-08	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	124
AciI	CCGC	1 cut(s)	972
AclI	AACGTT	1 cut(s)	671
AclWI	GGATC	2 cut(s)	777, 991
AcsI	RAATTY	2 cut(s)	380, 917
AcuI	CTGAAG	1 cut(s)	1026
AfaI	GTAC	3 cut(s)	238, 266, 616
AgsI	TTSAA	6 cut(s)	169, 380, 810, 991, 1032, 1044
AjnI	CCWGG	1 cut(s)	849
AluBI	AGCT	5 cut(s)	158, 175, 203, 250, 968
AluI	AGCT	5 cut(s)	158, 175, 203, 250, 968
Alw21I	GWGCWC	2 cut(s)	252, 400
Alw26I	GTCTC	2 cut(s)	110, 716
AlwI	GGATC	2 cut(s)	777, 991
AlwNI	CAGNNNCTG	1 cut(s)	37
Ama87I	CYCGRG	2 cut(s)	545, 719
AoxI	GGCC	3 cut(s)	144, 314, 391
ApeKI	GCWGC	5 cut(s)	55, 203, 912, 965, 968
ApoI	RAATTY	2 cut(s)	380, 917
Asp700I	GAANNNNTTC	1 cut(s)	690
AspS9I	GGNCC	1 cut(s)	315
AsuC2I	CCSGG	2 cut(s)	52, 124
AsuHPI	GGTGA	2 cut(s)	4, 658
AvaI	CYCGRG	2 cut(s)	545, 719
AxyI	CCTNAGG	2 cut(s)	642, 979
BanII	GRGCYC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	602
BbsI	GAAGAC	2 cut(s)	221, 471
Bbv12I	GWGCWC	2 cut(s)	252, 400
BbvI	GCAGC	5 cut(s)	67, 190, 899, 955, 977
BccI	CCATC	1 cut(s)	362
BcgI	CGANNNNNNTGC	2 cut(s)	526, 560
BciT130I	CCWGG	1 cut(s)	851
BciVI	GTATCC	1 cut(s)	299
BclI	TGATCA	1 cut(s)	648
BcnI	CCSGG	2 cut(s)	52, 124
BcoDI	GTCTC	2 cut(s)	110, 716
BfaI	CTAG	2 cut(s)	798, 869
BfmI	CTRYAG	2 cut(s)	204, 253
BfuI	GTATCC	1 cut(s)	299
BisI	GCNGC	6 cut(s)	56, 204, 913, 966, 969, 972
BlsI	GCNGC	6 cut(s)	57, 205, 914, 967, 970, 973
Bme1390I	CCNGG	3 cut(s)	52, 124, 851
BmeT110I	CYCGRG	2 cut(s)	545, 719
BmgT120I	GGNCC	1 cut(s)	315
BmrFI	CCNGG	3 cut(s)	52, 124, 851
BmrI	ACTGGG	1 cut(s)	1032
BmsI	GCATC	2 cut(s)	202, 794
BmuI	ACTGGG	1 cut(s)	1032
BpiI	GAAGAC	2 cut(s)	221, 471
BpmI	CTGGAG	1 cut(s)	331
BpuMI	CCSGG	2 cut(s)	52, 124
BsaBI	GATNNNNATC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	122, 849
Bse1I	ACTGG	9 cut(s)	240, 314, 364, 443, 486, 590, 622, 670, 1038
Bse21I	CCTNAGG	2 cut(s)	642, 979
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	851
BseDI	CCNNGG	2 cut(s)	122, 849
BseGI	GGATG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	297
BseMII	CTCAG	6 cut(s)	30, 357, 656, 717, 993, 1099
BseNI	ACTGG	9 cut(s)	240, 314, 364, 443, 486, 590, 622, 670, 1038
BseRI	GAGGAG	2 cut(s)	260, 338
BseXI	GCAGC	5 cut(s)	67, 190, 899, 955, 977
Bsh1285I	CGRYCG	1 cut(s)	128
BshFI	GGCC	3 cut(s)	146, 316, 393
BsiEI	CGRYCG	1 cut(s)	128
BsiHKAI	GWGCWC	2 cut(s)	252, 400
BsiHKCI	CYCGRG	2 cut(s)	545, 719
BsiSI	CCGG	2 cut(s)	51, 124
BslFI	GGGAC	1 cut(s)	115
BsmAI	GTCTC	2 cut(s)	110, 716
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	2 cut(s)	842, 910
BsnI	GGCC	3 cut(s)	146, 316, 393
BsoBI	CYCGRG	2 cut(s)	545, 719
Bsp1286I	GDGCHC	2 cut(s)	252, 400
Bsp143I	GATC	4 cut(s)	648, 697, 769, 983
BspACI	CCGC	1 cut(s)	972
BspANI	GGCC	3 cut(s)	146, 316, 393
BspCNI	CTCAG	6 cut(s)	29, 356, 655, 718, 992, 1098
BspHI	TCATGA	1 cut(s)	403
BspMAI	CTGCAG	1 cut(s)	208
BspPI	GGATC	2 cut(s)	777, 991
BsrI	ACTGG	9 cut(s)	240, 314, 364, 443, 486, 590, 622, 670, 1038
BssECI	CCNNGG	2 cut(s)	122, 849
BssMI	GATC	4 cut(s)	648, 697, 769, 983
BssSI	CACGAG	1 cut(s)	602
Bst2BI	CACGAG	1 cut(s)	602
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	6 cut(s)	39, 46, 236, 679, 1048, 1061
BstC8I	GCNNGC	3 cut(s)	216, 638, 910
BstDEI	CTNAG	6 cut(s)	16, 343, 642, 726, 979, 1085
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	4 cut(s)	651, 700, 772, 986
BstMAI	GTCTC	2 cut(s)	110, 716
BstMBI	GATC	4 cut(s)	648, 697, 769, 983
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	971
BstNI	CCWGG	1 cut(s)	851
BstNSI	RCATGY	1 cut(s)	333
BstSCI	CCNGG	3 cut(s)	50, 122, 849
BstSFI	CTRYAG	2 cut(s)	204, 253
BstV1I	GCAGC	5 cut(s)	67, 190, 899, 955, 977
BstV2I	GAAGAC	2 cut(s)	221, 471
BstX2I	RGATCY	2 cut(s)	769, 983
BstXI	CCANNNNNNTGG	1 cut(s)	512
BstYI	RGATCY	2 cut(s)	769, 983
Bsu36I	CCTNAGG	2 cut(s)	642, 979
BsuI	GTATCC	1 cut(s)	299
BsuRI	GGCC	3 cut(s)	146, 316, 393
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	5 cut(s)	35, 42, 232, 247, 357
Cac8I	GCNNGC	3 cut(s)	216, 638, 910
CaiI	CAGNNNCTG	1 cut(s)	37
CciI	TCATGA	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	315
Csp6I	GTAC	3 cut(s)	237, 265, 615
CviAII	CATG	5 cut(s)	190, 330, 404, 715, 893
CviQI	GTAC	3 cut(s)	237, 265, 615
DdeI	CTNAG	6 cut(s)	16, 343, 642, 726, 979, 1085
DpnI	GATC	4 cut(s)	650, 699, 771, 985
DpnII	GATC	4 cut(s)	648, 697, 769, 983
DrdI	GACNNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	1026
Eco81I	CCTNAGG	2 cut(s)	642, 979
Eco88I	CYCGRG	2 cut(s)	545, 719
EcoICRI	GAGCTC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	849
EcoT22I	ATGCAT	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	5 cut(s)	193, 333, 407, 718, 896
FalI	AAGNNNNNCTT	4 cut(s)	142, 174, 1012, 1044
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	5 cut(s)	189, 329, 403, 714, 892
FbaI	TGATCA	1 cut(s)	648
Fnu4HI	GCNGC	6 cut(s)	56, 204, 913, 966, 969, 972
FokI	GGATG	1 cut(s)	180
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	6 cut(s)	56, 204, 913, 966, 969, 972
FspBI	CTAG	2 cut(s)	798, 869
GluI	GCNGC	6 cut(s)	56, 204, 913, 966, 969, 972
GsuI	CTGGAG	1 cut(s)	331
HaeIII	GGCC	3 cut(s)	146, 316, 393
HapII	CCGG	2 cut(s)	51, 124
Hin1II	CATG	5 cut(s)	193, 333, 407, 718, 896
HincII	GTYRAC	2 cut(s)	675, 1057
HindII	GTYRAC	2 cut(s)	675, 1057
HinfI	GANTC	6 cut(s)	86, 118, 271, 501, 806, 845
HpaI	GTTAAC	2 cut(s)	675, 1057
HpaII	CCGG	2 cut(s)	51, 124
HphI	GGTGA	2 cut(s)	4, 658
Hpy166II	GTNNAC	3 cut(s)	42, 675, 1057
Hpy188I	TCNGA	7 cut(s)	183, 346, 463, 565, 746, 805, 832
Hpy188III	TCNNGA	8 cut(s)	83, 404, 547, 695, 773, 887, 981, 1064
Hpy8I	GTNNAC	3 cut(s)	42, 675, 1057
HpyAV	CCTTC	3 cut(s)	163, 383, 1105
HpyCH4III	ACNGT	6 cut(s)	39, 46, 236, 679, 1048, 1061
HpyCH4IV	ACGT	2 cut(s)	613, 671
HpyCH4V	TGCA	9 cut(s)	193, 206, 430, 498, 537, 896, 908, 915, 965
HpyF10VI	GCNNNNNNNGC	1 cut(s)	971
HpyF3I	CTNAG	6 cut(s)	16, 343, 642, 726, 979, 1085
HpySE526I	ACGT	2 cut(s)	613, 671
Hsp92II	CATG	5 cut(s)	193, 333, 407, 718, 896
Ksp22I	TGATCA	1 cut(s)	648
KspAI	GTTAAC	2 cut(s)	675, 1057
Kzo9I	GATC	4 cut(s)	648, 697, 769, 983
LmnI	GCTCC	2 cut(s)	172, 247
Lsp1109I	GCAGC	5 cut(s)	67, 190, 899, 955, 977
LweI	GCATC	2 cut(s)	202, 794
MaeI	CTAG	2 cut(s)	798, 869
MaeII	ACGT	2 cut(s)	613, 671
MaeIII	GTNAC	3 cut(s)	33, 556, 679
MalI	GATC	4 cut(s)	650, 699, 771, 985
MboI	GATC	4 cut(s)	648, 697, 769, 983
MboII	GAAGA	6 cut(s)	221, 476, 786, 875, 1019, 1020
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	2 cut(s)	769, 983
MhlI	GDGCHC	2 cut(s)	252, 400
MluCI	AATT	6 cut(s)	134, 380, 418, 761, 917, 1032
MlyI	GAGTC	3 cut(s)	80, 112, 510
MmeI	TCCRAC	3 cut(s)	344, 840, 1025
MnlI	CCTC	9 cut(s)	25, 238, 306, 316, 319, 411, 554, 651, 988
Mph1103I	ATGCAT	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	4 cut(s)	6, 105, 674, 1056
MspA1I	CMGCKG	1 cut(s)	968
MspI	CCGG	2 cut(s)	51, 124
MspR9I	CCNGG	3 cut(s)	52, 124, 851
MunI	CAATTG	1 cut(s)	418
Mva1269I	GAATGC	2 cut(s)	842, 910
MvaI	CCWGG	1 cut(s)	851
MwoI	GCNNNNNNNGC	1 cut(s)	971
NciI	CCSGG	2 cut(s)	52, 124
NdeII	GATC	4 cut(s)	648, 697, 769, 983
NlaIII	CATG	5 cut(s)	193, 333, 407, 718, 896
NmeAIII	GCCGAG	1 cut(s)	419
NmuCI	GTSAC	1 cut(s)	33
NsiI	ATGCAT	1 cut(s)	195
NspI	RCATGY	1 cut(s)	333
PaeR7I	CTCGAG	1 cut(s)	545
PagI	TCATGA	1 cut(s)	403
PctI	GAATGC	2 cut(s)	842, 910
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	3 cut(s)	271, 806, 845
PkrI	GCNGC	6 cut(s)	57, 205, 914, 967, 970, 973
PleI	GAGTC	3 cut(s)	80, 112, 509
PpsI	GAGTC	3 cut(s)	80, 112, 509
Psp124BI	GAGCTC	1 cut(s)	252
Psp1406I	AACGTT	1 cut(s)	671
Psp6I	CCWGG	1 cut(s)	849
PspGI	CCWGG	1 cut(s)	849
PspPI	GGNCC	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	37
PsuI	RGATCY	2 cut(s)	769, 983
PvuII	CAGCTG	1 cut(s)	968
RsaI	GTAC	3 cut(s)	238, 266, 616
RsaNI	GTAC	3 cut(s)	237, 265, 615
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	4 cut(s)	6, 105, 674, 1056
SatI	GCNGC	6 cut(s)	56, 204, 913, 966, 969, 972
Sau3AI	GATC	4 cut(s)	648, 697, 769, 983
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	3 cut(s)	80, 112, 510
ScrFI	CCNGG	3 cut(s)	52, 124, 851
SduI	GDGCHC	2 cut(s)	252, 400
SfaNI	GCATC	2 cut(s)	202, 794
SfcI	CTRYAG	2 cut(s)	204, 253
Sfr274I	CTCGAG	1 cut(s)	545
SlaI	CTCGAG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	6 cut(s)	134, 380, 418, 761, 917, 1032
SsiI	CCGC	1 cut(s)	972
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	2 cut(s)	798, 869
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	3 cut(s)	50, 122, 849
TaaI	ACNGT	6 cut(s)	39, 46, 236, 679, 1048, 1061
TaiI	ACGT	2 cut(s)	616, 674
TaqI	TCGA	1 cut(s)	546
TasI	AATT	6 cut(s)	134, 380, 418, 761, 917, 1032
TauI	GCSGC	1 cut(s)	974
TfiI	GAWTC	3 cut(s)	271, 806, 845
Tru1I	TTAA	4 cut(s)	6, 105, 674, 1056
Tru9I	TTAA	4 cut(s)	6, 105, 674, 1056
TscAI	CASTG	5 cut(s)	42, 49, 239, 247, 364
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	5 cut(s)	55, 203, 912, 965, 968
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	4 cut(s)	402, 420, 675, 849
TspRI	CASTG	5 cut(s)	42, 49, 239, 247, 364
XapI	RAATTY	2 cut(s)	380, 917
XceI	RCATGY	1 cut(s)	333
XhoI	CTCGAG	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	2 cut(s)	798, 869
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.