Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Forward (+)

28704092 .. 28707210

Gene Structure 3119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40240.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCGTCCACAAGCTGTCCTGCCTGCTGATATTGGTGTTCACTGTACCGATAAGGAGCTTTGTATGTTTTTACAGAAACTTACGAGTGGATCACCACTTCCAAGAAATGTGATCAATGATGTGAACCCTTACAATTACATGCCCTCAAATTTACCACCTGGTAGTTTTTGGTACTTGATTCGCTCTAATGAGAGCAAAGATACAAGTCTTGGATACTGGAGCCCCACAGAGGAGGCATGTAAAATATTCACAGACTCTGTCATCACTGGTTGGAGAAATACTCTTGAATTCTATGAAGGCCAAGCACCTCATGAATATAAAACCAATTGGAGAATGCAAGAGTACAGGATAACTTACCATAAAGTTTCAGAAAATAGCAAGACAAAGGAAGCCAATTTGCTTTGCAGAGTCCAGTCTGTTGGTGCTGAATGTAAAAACCCTATTGCTAATTGCTTCTCACAACCAGTTGTTTCTCTTGCCGAGACATGTACTGGACATGCTTCCACAAGCAAACCTCAGGTCATCAAGGATAATGAAACAGGGACCTTAACTGTTACAGAAAGGCTTCCAGATCATCAAGTCGAAATCATGCCTGAGATTGAGATAGATTTTCCTTTTGGAGATGACTACATTGAATTGCGGGATCTTGATAGACCAGCATCATTTTCTTCTAGTTCAAATTCAAGTTGCTTGACAATGTCATCAGACGAATGCTTTGATTCCCTGGCTTTGTTGGAAGAACTAGAACCCAAAACTAGTCAAGACCAGGCTAATAAGAATGCAGGCTGCAAATACAGTATTTCTGTATCTCAAAAACCAGATGAGTTGGTTATGTATGCAGCAGCCTCTTCCTCAGGATCTTTGAACAAATCTCCAAATGAAGAAAAGGTCAAAAGTCATTCTTCTAAGATTCCCAGTTCAGCAGTCTGCGTTAAGAATAAAGAAAAGACAACAAAGAAACTGAGCAGAAATGAAATGCCAGACCAAGGGAATGAAGCTATCTCAAATTCACATACGGCAACACCTCCAGGGGGAAAGAAGGCTACTGTTGTCAAAACCAAGAAGCTGAAGAAAAGGTATCTTTGCTTCATGCCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

367

Amino Acids

40.74

Weight (kDa)

6.42

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 117	5.7e-16	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	640
AclWI	GGATC	3 cut(s)	97, 651, 865
AcsI	RAATTY	4 cut(s)	148, 287, 679, 1006
AcuI	CTGAAG	1 cut(s)	1088
AfaI	GTAC	4 cut(s)	46, 173, 344, 490
AfiI	CCNNNNNNNGG	3 cut(s)	229, 986, 1031
AflIII	ACRYGT	1 cut(s)	485
AgsI	TTSAA	5 cut(s)	287, 635, 678, 684, 865
AhlI	ACTAGT	1 cut(s)	755
AjnI	CCWGG	4 cut(s)	157, 723, 765, 1027
AluBI	AGCT	4 cut(s)	14, 58, 998, 1066
AluI	AGCT	4 cut(s)	14, 58, 998, 1066
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	3 cut(s)	97, 651, 865
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	3 cut(s)	786, 839, 842
ApoI	RAATTY	4 cut(s)	148, 287, 679, 1006
ArsI	GACNNNNNNTTYG	4 cut(s)	504, 536, 698, 730
Asp700I	GAANNNNTTC	1 cut(s)	564
AspS9I	GGNCC	1 cut(s)	543
AsuHPI	GGTGA	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	543
AxyI	CCTNAGG	2 cut(s)	516, 853
BanII	GRGCYC	1 cut(s)	224
BarI	GAAGNNNNNNTAC	1 cut(s)	1070
BbvI	GCAGC	3 cut(s)	773, 851, 854
BceAI	ACGGC	1 cut(s)	1032
BciT130I	CCWGG	4 cut(s)	159, 725, 767, 1029
BciVI	GTATCC	1 cut(s)	206
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	476
BcuI	ACTAGT	1 cut(s)	755
BfaI	CTAG	3 cut(s)	672, 743, 756
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	3 cut(s)	787, 840, 843
BlsI	GCNGC	3 cut(s)	788, 841, 844
Bme1390I	CCNGG	4 cut(s)	159, 725, 767, 1029
Bme18I	GGWCC	1 cut(s)	543
BmgT120I	GGNCC	1 cut(s)	543
BmiI	GGNNCC	2 cut(s)	221, 544
BmrFI	CCNGG	4 cut(s)	159, 725, 767, 1029
BmrI	ACTGGG	1 cut(s)	909
BmsI	GCATC	1 cut(s)	668
BmuI	ACTGGG	1 cut(s)	909
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BpmI	CTGGAG	2 cut(s)	238, 1011
BsaJI	CCNNGG	3 cut(s)	723, 985, 1028
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 986, 1031
Bse1I	ACTGG	6 cut(s)	221, 271, 412, 464, 496, 915
Bse21I	CCTNAGG	2 cut(s)	516, 853
BseBI	CCWGG	4 cut(s)	159, 725, 767, 1029
BseDI	CCNNGG	3 cut(s)	723, 985, 1028
BseLI	CCNNNNNNNGG	3 cut(s)	229, 986, 1031
BseMII	CTCAG	4 cut(s)	530, 585, 867, 953
BseNI	ACTGG	6 cut(s)	221, 271, 412, 464, 496, 915
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	773, 851, 854
BshFI	GGCC	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	3 cut(s)	229, 986, 1031
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	556
BsmI	GAATGC	3 cut(s)	339, 716, 784
BsnI	GGCC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	5 cut(s)	89, 111, 571, 643, 857
BspACI	CCGC	1 cut(s)	640
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	4 cut(s)	529, 586, 866, 954
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	221, 544
BspPI	GGATC	3 cut(s)	97, 651, 865
BsrI	ACTGG	6 cut(s)	221, 271, 412, 464, 496, 915
BssECI	CCNNGG	3 cut(s)	723, 985, 1028
BssMI	GATC	5 cut(s)	89, 111, 571, 643, 857
BssT1I	CCWWGG	1 cut(s)	985
Bst2UI	CCWGG	4 cut(s)	159, 725, 767, 1029
Bst4CI	ACNGT	4 cut(s)	44, 553, 797, 1048
Bst6I	CTCTTC	1 cut(s)	853
BstC8I	GCNNGC	2 cut(s)	24, 784
BstDEI	CTNAG	5 cut(s)	516, 594, 853, 906, 962
BstKTI	GATC	5 cut(s)	92, 114, 574, 646, 860
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	5 cut(s)	89, 111, 571, 643, 857
BstNI	CCWGG	4 cut(s)	159, 725, 767, 1029
BstNSI	RCATGY	4 cut(s)	142, 240, 489, 500
BstSCI	CCNGG	4 cut(s)	157, 723, 765, 1027
BstV1I	GCAGC	3 cut(s)	773, 851, 854
BstX2I	RGATCY	2 cut(s)	643, 857
BstXI	CCANNNNNNTGG	1 cut(s)	419
BstYI	RGATCY	2 cut(s)	643, 857
Bsu36I	CCTNAGG	2 cut(s)	516, 853
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	40, 264
Cac8I	GCNNGC	2 cut(s)	24, 784
CaiI	CAGNNNCTG	1 cut(s)	257
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	543
CsiI	ACCWGGT	1 cut(s)	157
Csp6I	GTAC	4 cut(s)	45, 172, 343, 489
CviAII	CATG	8 cut(s)	139, 237, 311, 486, 497, 589, 1090, 1095
CviQI	GTAC	4 cut(s)	45, 172, 343, 489
DdeI	CTNAG	5 cut(s)	516, 594, 853, 906, 962
DpnI	GATC	5 cut(s)	91, 113, 573, 645, 859
DpnII	GATC	5 cut(s)	89, 111, 571, 643, 857
Eam1104I	CTCTTC	1 cut(s)	853
EarI	CTCTTC	1 cut(s)	853
Eco130I	CCWWGG	1 cut(s)	985
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	1088
Eco81I	CCTNAGG	2 cut(s)	516, 853
EcoO109I	RGGNCCY	1 cut(s)	543
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	4 cut(s)	157, 723, 765, 1027
EcoT14I	CCWWGG	1 cut(s)	985
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	985
FaeI	CATG	8 cut(s)	142, 240, 314, 489, 500, 592, 1093, 1098
FalI	AAGNNNNNCTT	2 cut(s)	886, 918
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	8 cut(s)	138, 236, 310, 485, 496, 588, 1089, 1094
FauI	CCCGC	1 cut(s)	633
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	787, 840, 843
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	3 cut(s)	787, 840, 843
FspBI	CTAG	3 cut(s)	672, 743, 756
GluI	GCNGC	3 cut(s)	787, 840, 843
GsuI	CTGGAG	2 cut(s)	238, 1011
HaeIII	GGCC	1 cut(s)	300
Hin1II	CATG	8 cut(s)	142, 240, 314, 489, 500, 592, 1093, 1098
HinfI	GANTC	5 cut(s)	178, 254, 408, 719, 910
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	3 cut(s)	8, 40, 124
Hpy188I	TCNGA	2 cut(s)	370, 706
Hpy188III	TCNNGA	6 cut(s)	284, 311, 569, 647, 761, 855
Hpy8I	GTNNAC	3 cut(s)	8, 40, 124
HpyAV	CCTTC	2 cut(s)	290, 1033
HpyCH4III	ACNGT	4 cut(s)	44, 553, 797, 1048
HpyCH4V	TGCA	5 cut(s)	337, 405, 782, 789, 839
HpyF3I	CTNAG	5 cut(s)	516, 594, 853, 906, 962
Hsp92II	CATG	8 cut(s)	142, 240, 314, 489, 500, 592, 1093, 1098
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	5 cut(s)	89, 111, 571, 643, 857
LmnI	GCTCC	2 cut(s)	55, 219
Lsp1109I	GCAGC	3 cut(s)	773, 851, 854
LweI	GCATC	1 cut(s)	668
MabI	ACCWGGT	1 cut(s)	157
MaeI	CTAG	3 cut(s)	672, 743, 756
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	5 cut(s)	91, 113, 573, 645, 859
MboI	GATC	5 cut(s)	89, 111, 571, 643, 857
MboII	GAAGA	6 cut(s)	660, 749, 840, 893, 894, 1081
MfeI	CAATTG	1 cut(s)	325
MflI	RGATCY	2 cut(s)	643, 857
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	9 cut(s)	133, 148, 287, 325, 394, 448, 635, 679, 1006
MlyI	GAGTC	2 cut(s)	248, 417
MmeI	TCCRAC	2 cut(s)	251, 714
MnlI	CCTC	8 cut(s)	154, 223, 226, 318, 525, 856, 862, 1035
MroXI	GAANNNNTTC	1 cut(s)	564
MseI	TTAA	2 cut(s)	548, 933
MspR9I	CCNGG	4 cut(s)	159, 725, 767, 1029
MunI	CAATTG	1 cut(s)	325
Mva1269I	GAATGC	3 cut(s)	339, 716, 784
MvaI	CCWGG	4 cut(s)	159, 725, 767, 1029
NdeII	GATC	5 cut(s)	89, 111, 571, 643, 857
NlaIII	CATG	8 cut(s)	142, 240, 314, 489, 500, 592, 1093, 1098
NlaIV	GGNNCC	2 cut(s)	221, 544
NmeAIII	GCCGAG	1 cut(s)	505
NspI	RCATGY	4 cut(s)	142, 240, 489, 500
PagI	TCATGA	1 cut(s)	310
PciI	ACATGT	1 cut(s)	485
PctI	GAATGC	3 cut(s)	339, 716, 784
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	3 cut(s)	178, 719, 910
PflFI	GACNNNGTC	2 cut(s)	257, 697
PkrI	GCNGC	3 cut(s)	788, 841, 844
PleI	GAGTC	2 cut(s)	248, 416
PpsI	GAGTC	2 cut(s)	248, 416
PpuMI	RGGWCCY	1 cut(s)	543
PscI	ACATGT	1 cut(s)	485
Psp5II	RGGWCCY	1 cut(s)	543
Psp6I	CCWGG	4 cut(s)	157, 723, 765, 1027
PspGI	CCWGG	4 cut(s)	157, 723, 765, 1027
PspN4I	GGNNCC	2 cut(s)	221, 544
PspPI	GGNCC	1 cut(s)	543
PspPPI	RGGWCCY	1 cut(s)	543
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	643, 857
PsyI	GACNNNGTC	2 cut(s)	257, 697
RsaI	GTAC	4 cut(s)	46, 173, 344, 490
RsaNI	GTAC	4 cut(s)	45, 172, 343, 489
SaqAI	TTAA	2 cut(s)	548, 933
SatI	GCNGC	3 cut(s)	787, 840, 843
Sau3AI	GATC	5 cut(s)	89, 111, 571, 643, 857
Sau96I	GGNCC	1 cut(s)	543
SchI	GAGTC	2 cut(s)	248, 417
ScrFI	CCNGG	4 cut(s)	159, 725, 767, 1029
SduI	GDGCHC	1 cut(s)	224
SexAI	ACCWGGT	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	668
SinI	GGWCC	1 cut(s)	543
SpeI	ACTAGT	1 cut(s)	755
Sse9I	AATT	9 cut(s)	133, 148, 287, 325, 394, 448, 635, 679, 1006
SsiI	CCGC	1 cut(s)	640
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	3 cut(s)	672, 743, 756
StyD4I	CCNGG	4 cut(s)	157, 723, 765, 1027
StyI	CCWWGG	1 cut(s)	985
TaaI	ACNGT	4 cut(s)	44, 553, 797, 1048
TaqI	TCGA	1 cut(s)	582
TasI	AATT	9 cut(s)	133, 148, 287, 325, 394, 448, 635, 679, 1006
TatI	WGTACW	2 cut(s)	342, 488
TfiI	GAWTC	3 cut(s)	178, 719, 910
Tru1I	TTAA	2 cut(s)	548, 933
Tru9I	TTAA	2 cut(s)	548, 933
TscAI	CASTG	2 cut(s)	47, 271
TseI	GCWGC	3 cut(s)	786, 839, 842
TspDTI	ATGAA	7 cut(s)	309, 327, 549, 894, 987, 1008, 1078
TspRI	CASTG	2 cut(s)	47, 271
Tth111I	GACNNNGTC	2 cut(s)	257, 697
VpaK11BI	GGWCC	1 cut(s)	543
XapI	RAATTY	4 cut(s)	148, 287, 679, 1006
XceI	RCATGY	4 cut(s)	142, 240, 489, 500
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	3 cut(s)	672, 743, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.