Rh6CG424300
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005177
Physical Location & Seq
Reverse (-)
60704024 .. 60707165
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG424300.1

Sequence Viewer

Length: 906 bp
ATGCATCCACAAGCTGCACTCCTGCCTGCTGATATTGGTCTTCACTATACTGATGAGGAGCTCCGTATGTTTATGTTTTTACATAACCTTATAAATGGATCACCACCTCCAGCAAATGTGATCAATGGTGTAAATCCTTACCAATACATGCCCTCAAATTTACCGCCTGGTAGTCTTTGGTACTTGATTCGCTCTAATGAGAGCAAAGATACAAATCTTGGATACTGGAGGCCCAAAGAGGAGGCATGTAAAATATTCACAGACTCTACCATCACTGGTTGGAGAACTACCCTTGAATTCTATGAAGGCCGAGCACCTCATGAACAAAAAACCAATTGGGTAATGCAAGAATACTGGATAACTTACAAGAAAGTTTCCGAAAACAGCAAGATAAAGGAAGCCAGTTTGCTTTGCAGAGTCCAATCTATTGGTGCTGAACCGAAATCAAACTGCAAAAACCTCGAGAAAAAGGTTACTTCTGATGTTGCTAATCACTTCACACAACCAGTTGGTCCACTCGTGGAGAAACGTACTGGACACGCTTCCACAAGCAAGCCTCAGGTGATCAAGGATAATGAAACAGGAACGTTAACTGTGACAGAAAGGCTTCCAGATCATCAAATAGAAATCATGCCCGAGACTGAGATAGATTTTCCTTTCGGAGATGACTACATAGAATTGCTGGATCTTGATAGACCAGCATCATTTTCTTCTAGTTCAGATTCAAGTTGCTTGACAATATCATCAGACGAATGCTTCGATTCCCTGGCTTTGTTGGAAGAACTAGAATCCAAAACTAGTCAAGACCGTGCAAATAAGAATGCAGGCTGCAAATTCAGTATTTCAGTATCTCAAAGACCAGATGAGTTGGTTATGTATGCAGCGGCCGCTTCCTCAGGTACATAA

Protein Analysis

301

Amino Acids

33.75

Weight (kDa)

5.04

Isoelectric Point (pI)

55.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 118 3e-15 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 92
AciI CCGC 3 cut(s) 164, 884, 888
AclI AACGTT 1 cut(s) 587
AclWI GGATC 2 cut(s) 106, 693
AcoI YGGCCR 1 cut(s) 885
AcsI RAATTY 3 cut(s) 157, 296, 833
AfaI GTAC 3 cut(s) 182, 532, 901
AgsI TTSAA 2 cut(s) 296, 726
AhlI ACTAGT 1 cut(s) 797
AjnI CCWGG 2 cut(s) 166, 765
AluBI AGCT 2 cut(s) 14, 61
AluI AGCT 2 cut(s) 14, 61
Alw21I GWGCWC 2 cut(s) 63, 316
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 2 cut(s) 106, 693
Ama87I CYCGRG 2 cut(s) 461, 635
AoxI GGCC 3 cut(s) 230, 307, 885
ApeKI GCWGC 3 cut(s) 14, 828, 881
ApoI RAATTY 3 cut(s) 157, 296, 833
ArsI GACNNNNNNTTYG 2 cut(s) 740, 772
Asp700I GAANNNNTTC 1 cut(s) 606
AspS9I GGNCC 2 cut(s) 231, 512
AsuHPI GGTGA 2 cut(s) 93, 574
AvaI CYCGRG 2 cut(s) 461, 635
AvaII GGWCC 1 cut(s) 512
AxyI CCTNAGG 2 cut(s) 558, 895
BanII GRGCYC 1 cut(s) 63
BauI CACGAG 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 32
Bbv12I GWGCWC 2 cut(s) 63, 316
BbvI GCAGC 2 cut(s) 815, 893
BccI CCATC 1 cut(s) 278
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BciT130I CCWGG 2 cut(s) 168, 767
BciVI GTATCC 1 cut(s) 215
BclI TGATCA 2 cut(s) 120, 564
BcoDI GTCTC 1 cut(s) 632
BcuI ACTAGT 1 cut(s) 797
BfaI CTAG 3 cut(s) 714, 785, 798
BfuI GTATCC 1 cut(s) 215
BisI GCNGC 5 cut(s) 15, 829, 882, 885, 888
BlsI GCNGC 5 cut(s) 16, 830, 883, 886, 889
Bme1390I CCNGG 2 cut(s) 168, 767
Bme18I GGWCC 1 cut(s) 512
BmeT110I CYCGRG 2 cut(s) 461, 635
BmgT120I GGNCC 2 cut(s) 231, 512
BmrFI CCNGG 2 cut(s) 168, 767
BmsI GCATC 2 cut(s) 13, 710
BpiI GAAGAC 1 cut(s) 32
BpmI CTGGAG 2 cut(s) 93, 247
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 765
Bse1I ACTGG 6 cut(s) 230, 280, 359, 402, 506, 538
Bse21I CCTNAGG 2 cut(s) 558, 895
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 2 cut(s) 168, 767
BseDI CCNNGG 1 cut(s) 765
BseGI GGATG 1 cut(s) 4
BseJI GATNNNNATC 1 cut(s) 213
BseMII CTCAG 2 cut(s) 572, 633
BseNI ACTGG 6 cut(s) 230, 280, 359, 402, 506, 538
BseRI GAGGAG 2 cut(s) 71, 254
BseX3I CGGCCG 1 cut(s) 885
BseXI GCAGC 2 cut(s) 815, 893
Bsh1285I CGRYCG 1 cut(s) 888
BshFI GGCC 3 cut(s) 232, 309, 887
BsiEI CGRYCG 1 cut(s) 888
BsiHKAI GWGCWC 2 cut(s) 63, 316
BsiHKCI CYCGRG 2 cut(s) 461, 635
BsmAI GTCTC 1 cut(s) 632
BsmI GAATGC 2 cut(s) 758, 826
BsnI GGCC 3 cut(s) 232, 309, 887
BsoBI CYCGRG 2 cut(s) 461, 635
Bsp1286I GDGCHC 2 cut(s) 63, 316
Bsp143I GATC 5 cut(s) 98, 120, 564, 613, 685
BspACI CCGC 3 cut(s) 164, 884, 888
BspANI GGCC 3 cut(s) 232, 309, 887
BspCNI CTCAG 2 cut(s) 571, 634
BspHI TCATGA 1 cut(s) 319
BspPI GGATC 2 cut(s) 106, 693
BsrI ACTGG 6 cut(s) 230, 280, 359, 402, 506, 538
BssECI CCNNGG 1 cut(s) 765
BssMI GATC 5 cut(s) 98, 120, 564, 613, 685
BssSI CACGAG 1 cut(s) 518
Bst2BI CACGAG 1 cut(s) 518
Bst2UI CCWGG 2 cut(s) 168, 767
Bst4CI ACNGT 2 cut(s) 595, 809
BstC8I GCNNGC 3 cut(s) 27, 554, 826
BstDEI CTNAG 3 cut(s) 558, 642, 895
BstF5I GGATG 1 cut(s) 4
BstKTI GATC 5 cut(s) 101, 123, 567, 616, 688
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 5 cut(s) 98, 120, 564, 613, 685
BstMCI CGRYCG 1 cut(s) 888
BstMWI GCNNNNNNNGC 1 cut(s) 887
BstNI CCWGG 2 cut(s) 168, 767
BstNSI RCATGY 2 cut(s) 151, 249
BstSCI CCNGG 2 cut(s) 166, 765
BstV1I GCAGC 2 cut(s) 815, 893
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 685
BstXI CCANNNNNNTGG 1 cut(s) 428
BstYI RGATCY 1 cut(s) 685
BstZI CGGCCG 1 cut(s) 885
Bsu36I CCTNAGG 2 cut(s) 558, 895
BsuI GTATCC 1 cut(s) 215
BsuRI GGCC 3 cut(s) 232, 309, 887
BtsCI GGATG 1 cut(s) 4
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 3 cut(s) 27, 554, 826
CciI TCATGA 1 cut(s) 319
CciNI GCGGCCGC 1 cut(s) 885
Cfr13I GGNCC 2 cut(s) 231, 512
Csp6I GTAC 3 cut(s) 181, 531, 900
CviAII CATG 4 cut(s) 148, 246, 320, 631
CviQI GTAC 3 cut(s) 181, 531, 900
DdeI CTNAG 3 cut(s) 558, 642, 895
DpnI GATC 5 cut(s) 100, 122, 566, 615, 687
DpnII GATC 5 cut(s) 98, 120, 564, 613, 685
EaeI YGGCCR 1 cut(s) 885
EagI CGGCCG 1 cut(s) 885
Ecl136II GAGCTC 1 cut(s) 61
EclXI CGGCCG 1 cut(s) 885
Eco24I GRGCYC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 512
Eco52I CGGCCG 1 cut(s) 885
Eco53kI GAGCTC 1 cut(s) 61
Eco81I CCTNAGG 2 cut(s) 558, 895
Eco88I CYCGRG 2 cut(s) 461, 635
EcoICRI GAGCTC 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 296
EcoRII CCWGG 2 cut(s) 166, 765
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 63
FaeI CATG 4 cut(s) 151, 249, 323, 634
FatI CATG 4 cut(s) 147, 245, 319, 630
FbaI TGATCA 2 cut(s) 120, 564
Fnu4HI GCNGC 5 cut(s) 15, 829, 882, 885, 888
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 5 cut(s) 15, 829, 882, 885, 888
FspBI CTAG 3 cut(s) 714, 785, 798
GluI GCNGC 5 cut(s) 15, 829, 882, 885, 888
GsuI CTGGAG 2 cut(s) 93, 247
HaeIII GGCC 3 cut(s) 232, 309, 887
Hin1II CATG 4 cut(s) 151, 249, 323, 634
HincII GTYRAC 1 cut(s) 591
HindII GTYRAC 1 cut(s) 591
HinfI GANTC 6 cut(s) 187, 263, 417, 722, 761, 788
HpaI GTTAAC 1 cut(s) 591
HphI GGTGA 2 cut(s) 93, 574
Hpy166II GTNNAC 2 cut(s) 515, 591
Hpy188I TCNGA 5 cut(s) 379, 481, 662, 721, 748
Hpy188III TCNNGA 5 cut(s) 320, 463, 611, 689, 803
Hpy8I GTNNAC 2 cut(s) 515, 591
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 2 cut(s) 595, 809
HpyCH4IV ACGT 2 cut(s) 529, 587
HpyCH4V TGCA 9 cut(s) 4, 17, 346, 414, 453, 812, 824, 831, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 887
HpyF3I CTNAG 3 cut(s) 558, 642, 895
HpySE526I ACGT 2 cut(s) 529, 587
Hsp92II CATG 4 cut(s) 151, 249, 323, 634
Ksp22I TGATCA 2 cut(s) 120, 564
KspAI GTTAAC 1 cut(s) 591
Kzo9I GATC 5 cut(s) 98, 120, 564, 613, 685
LmnI GCTCC 2 cut(s) 58, 66
Lsp1109I GCAGC 2 cut(s) 815, 893
LweI GCATC 2 cut(s) 13, 710
MaeI CTAG 3 cut(s) 714, 785, 798
MaeII ACGT 2 cut(s) 529, 587
MaeIII GTNAC 2 cut(s) 472, 595
MalI GATC 5 cut(s) 100, 122, 566, 615, 687
MboI GATC 5 cut(s) 98, 120, 564, 613, 685
MboII GAAGA 3 cut(s) 32, 702, 791
MfeI CAATTG 1 cut(s) 334
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 2 cut(s) 63, 316
MluCI AATT 5 cut(s) 157, 296, 334, 677, 833
MlyI GAGTC 2 cut(s) 257, 426
MmeI TCCRAC 2 cut(s) 260, 756
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 606
MseI TTAA 1 cut(s) 590
MspA1I CMGCKG 1 cut(s) 884
MspR9I CCNGG 2 cut(s) 168, 767
MunI CAATTG 1 cut(s) 334
Mva1269I GAATGC 2 cut(s) 758, 826
MvaI CCWGG 2 cut(s) 168, 767
MwoI GCNNNNNNNGC 1 cut(s) 887
NdeII GATC 5 cut(s) 98, 120, 564, 613, 685
NlaIII CATG 4 cut(s) 151, 249, 323, 634
NmeAIII GCCGAG 1 cut(s) 335
NmuCI GTSAC 1 cut(s) 595
NotI GCGGCCGC 1 cut(s) 885
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 151, 249
PaeR7I CTCGAG 1 cut(s) 461
PagI TCATGA 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 756
PctI GAATGC 2 cut(s) 758, 826
PdmI GAANNNNTTC 1 cut(s) 606
PfeI GAWTC 4 cut(s) 187, 722, 761, 788
PkrI GCNGC 5 cut(s) 16, 830, 883, 886, 889
PleI GAGTC 2 cut(s) 257, 425
PpsI GAGTC 2 cut(s) 257, 425
PsiI TTATAA 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 63
Psp1406I AACGTT 1 cut(s) 587
Psp6I CCWGG 2 cut(s) 166, 765
PspGI CCWGG 2 cut(s) 166, 765
PspPI GGNCC 2 cut(s) 231, 512
PsuI RGATCY 1 cut(s) 685
RsaI GTAC 3 cut(s) 182, 532, 901
RsaNI GTAC 3 cut(s) 181, 531, 900
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 590
SatI GCNGC 5 cut(s) 15, 829, 882, 885, 888
Sau3AI GATC 5 cut(s) 98, 120, 564, 613, 685
Sau96I GGNCC 2 cut(s) 231, 512
SchI GAGTC 2 cut(s) 257, 426
ScrFI CCNGG 2 cut(s) 168, 767
SduI GDGCHC 2 cut(s) 63, 316
SfaNI GCATC 2 cut(s) 13, 710
Sfr274I CTCGAG 1 cut(s) 461
SinI GGWCC 1 cut(s) 512
SlaI CTCGAG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
SpeI ACTAGT 1 cut(s) 797
Sse9I AATT 5 cut(s) 157, 296, 334, 677, 833
SsiI CCGC 3 cut(s) 164, 884, 888
SspI AATATT 1 cut(s) 255
SspMI CTAG 3 cut(s) 714, 785, 798
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 2 cut(s) 166, 765
TaaI ACNGT 2 cut(s) 595, 809
TaiI ACGT 2 cut(s) 532, 590
TaqI TCGA 2 cut(s) 462, 759
TasI AATT 5 cut(s) 157, 296, 334, 677, 833
TauI GCSGC 2 cut(s) 887, 890
TfiI GAWTC 4 cut(s) 187, 722, 761, 788
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 3 cut(s) 14, 828, 881
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 3 cut(s) 318, 336, 591
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 512
XapI RAATTY 3 cut(s) 157, 296, 833
XceI RCATGY 2 cut(s) 151, 249
XhoI CTCGAG 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 606
XspI CTAG 3 cut(s) 714, 785, 798
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.