Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001626.1

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Reverse (-)

24005 .. 27476

Gene Structure 3472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001626.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggcatcgtcggtgtggaggttggatgggtggtggtcgacgtggagtaagtggtcagaggccaaatcgtggcggcggtataccatggatcgtatgccgctgacttctaatctacggtgggtcgctagacagagatggcagctgtggtggatttgggttttcaaggtggtgggcttggcagaggcaaggcatggtgagtttttcatcgatttcttggtgatagatttgctgtggtttgctgtatggttcagcaggcaccttcgacttggggagattgaagacatggggctgcggtggtggcttgtcggtgggtcatctgacgacaagggcttgggtcaaattgatgtaccatggatgtggtgtcttgcctggggacgagttggtgtaatttcggttttatcttatggtcaatgtgctaacaagcgatccttgcacgtggtctggtttcattgggacgcggtgtggaagagggcgctggtttctctggcggttgcctatggggtgttatcgagtttctcggggttatctgtagcctggcgagtattttgcaagaaagggtgtgacactgatggagagacttgggaagaatgcttggaggagtgcaatgagatatgttacaaggatcctgtcttaaaggatcaacaatggagtgcttgcattgaccgttctcctggagttgaaaggtactcagaggaatgttttcacgcttgtgtatctggctgtggttacaagtttgacaaacctccagacatagctgataaagttcgcccaaacaggccacctaagcctccccctgtaccaaagccagcctcaccaattgttgaatccaaagcaacggccgaagacatacttgggacttctgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

33.27

Weight (kDa)

7.5

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	69
AccI	GTMKAC	2 cut(s)	38, 80
AccII	CGCG	1 cut(s)	458
AciI	CCGC	6 cut(s)	73, 76, 98, 292, 458, 488
AclWI	GGATC	5 cut(s)	96, 420, 617, 630, 645
AcoI	YGGCCR	1 cut(s)	837
AcvI	CACGTG	1 cut(s)	436
AfaI	GTAC	3 cut(s)	348, 686, 798
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	4 cut(s)	163, 278, 680, 824
AjiI	CACGTC	1 cut(s)	42
AjnI	CCWGG	3 cut(s)	368, 533, 670
AjuI	GAANNNNNNNTTGG	2 cut(s)	834, 866
AleI	CACNNNNGTG	1 cut(s)	708
AluBI	AGCT	2 cut(s)	142, 755
AluI	AGCT	2 cut(s)	142, 755
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	5 cut(s)	96, 420, 617, 630, 645
Ama87I	CYCGRG	1 cut(s)	517
AoxI	GGCC	3 cut(s)	60, 776, 837
ApeKI	GCWGC	2 cut(s)	139, 289
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	1 cut(s)	475
AsuHPI	GGTGA	3 cut(s)	206, 229, 804
AvaI	CYCGRG	1 cut(s)	517
BamHI	GGATCC	1 cut(s)	622
BanI	GGYRCC	1 cut(s)	255
BbrPI	CACGTG	1 cut(s)	436
BbsI	GAAGAC	2 cut(s)	285, 849
BbvI	GCAGC	2 cut(s)	151, 276
BccI	CCATC	3 cut(s)	20, 129, 563
BceAI	ACGGC	1 cut(s)	852
BcgI	CGANNNNNNTGC	2 cut(s)	528, 562
BciT130I	CCWGG	3 cut(s)	370, 535, 672
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	476
BisI	GCNGC	4 cut(s)	74, 98, 140, 290
BlsI	GCNGC	4 cut(s)	75, 99, 141, 291
Bme1390I	CCNGG	3 cut(s)	370, 535, 672
BmeT110I	CYCGRG	1 cut(s)	517
BmgBI	CACGTC	1 cut(s)	42
BmiI	GGNNCC	2 cut(s)	257, 624
BmrFI	CCNGG	3 cut(s)	370, 535, 672
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	2 cut(s)	285, 849
BpmI	CTGGAG	2 cut(s)	693, 729
Bpu10I	CCTNAGC	1 cut(s)	783
Bsa29I	ATCGAT	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	436
BsaJI	CCNNGG	3 cut(s)	84, 350, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	610
BseBI	CCWGG	3 cut(s)	370, 535, 672
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	84, 350, 369
BseGI	GGATG	2 cut(s)	31, 360
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	610
BseMII	CTCAG	1 cut(s)	702
BseRI	GAGGAG	1 cut(s)	611
BseX3I	CGGCCG	1 cut(s)	837
BseXI	GCAGC	2 cut(s)	151, 276
Bsh1236I	CGCG	1 cut(s)	458
Bsh1285I	CGRYCG	1 cut(s)	840
BshFI	GGCC	3 cut(s)	62, 778, 839
BshNI	GGYRCC	1 cut(s)	255
BshVI	ATCGAT	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	840
BsiHKCI	CYCGRG	1 cut(s)	517
BslFI	GGGAC	2 cut(s)	387, 467
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	569
BsmFI	GGGAC	2 cut(s)	387, 467
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	3 cut(s)	62, 778, 839
BsoBI	CYCGRG	1 cut(s)	517
Bsp143I	GATC	4 cut(s)	88, 425, 622, 637
Bsp19I	CCATGG	2 cut(s)	84, 350
BspACI	CCGC	6 cut(s)	73, 76, 98, 292, 458, 488
BspANI	GGCC	3 cut(s)	62, 778, 839
BspCNI	CTCAG	1 cut(s)	701
BspDI	ATCGAT	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	458
BspLI	GGNNCC	2 cut(s)	257, 624
BspPI	GGATC	5 cut(s)	96, 420, 617, 630, 645
BspT107I	GGYRCC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	610
BssECI	CCNNGG	3 cut(s)	84, 350, 369
BssMI	GATC	4 cut(s)	88, 425, 622, 637
BssNAI	GTATAC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	84, 350
Bst1107I	GTATAC	1 cut(s)	81
Bst2UI	CCWGG	3 cut(s)	370, 535, 672
Bst4CI	ACNGT	2 cut(s)	117, 665
Bst6I	CTCTTC	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	436
BstC8I	GCNNGC	3 cut(s)	254, 655, 807
BstDEI	CTNAG	2 cut(s)	688, 783
BstDSI	CCRYGG	2 cut(s)	84, 350
BstF5I	GGATG	2 cut(s)	31, 360
BstFNI	CGCG	1 cut(s)	458
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	4 cut(s)	91, 428, 625, 640
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	4 cut(s)	88, 425, 622, 637
BstMCI	CGRYCG	1 cut(s)	840
BstMWI	GCNNNNNNNGC	3 cut(s)	298, 430, 784
BstNI	CCWGG	3 cut(s)	370, 535, 672
BstSCI	CCNGG	3 cut(s)	368, 533, 670
BstSFI	CTRYAG	1 cut(s)	528
BstUI	CGCG	1 cut(s)	458
BstV1I	GCAGC	2 cut(s)	151, 276
BstV2I	GAAGAC	2 cut(s)	285, 849
BstX2I	RGATCY	1 cut(s)	622
BstXI	CCANNNNNNTGG	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	622
BstZ17I	GTATAC	1 cut(s)	81
BstZI	CGGCCG	1 cut(s)	837
Bsu15I	ATCGAT	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	62, 778, 839
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	2 cut(s)	84, 350
BtrI	CACGTC	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	31, 360
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	3 cut(s)	254, 655, 807
CfoI	GCGC	1 cut(s)	475
ClaI	ATCGAT	1 cut(s)	207
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	3 cut(s)	347, 685, 797
CviAII	CATG	4 cut(s)	85, 191, 283, 351
CviQI	GTAC	3 cut(s)	347, 685, 797
DdeI	CTNAG	2 cut(s)	688, 783
DpnI	GATC	4 cut(s)	90, 427, 624, 639
DpnII	GATC	4 cut(s)	88, 425, 622, 637
EaeI	YGGCCR	1 cut(s)	837
EagI	CGGCCG	1 cut(s)	837
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
EclXI	CGGCCG	1 cut(s)	837
Eco130I	CCWWGG	2 cut(s)	84, 350
Eco52I	CGGCCG	1 cut(s)	837
Eco72I	CACGTG	1 cut(s)	436
Eco88I	CYCGRG	1 cut(s)	517
EcoRII	CCWGG	3 cut(s)	368, 533, 670
EcoT14I	CCWWGG	2 cut(s)	84, 350
ErhI	CCWWGG	2 cut(s)	84, 350
FaeI	CATG	4 cut(s)	88, 194, 286, 354
FalI	AAGNNNNNCTT	4 cut(s)	413, 445, 834, 866
FaqI	GGGAC	2 cut(s)	387, 467
FatI	CATG	4 cut(s)	84, 190, 282, 350
FblI	GTMKAC	2 cut(s)	38, 80
Fnu4HI	GCNGC	4 cut(s)	74, 98, 140, 290
FokI	GGATG	2 cut(s)	38, 367
Fsp4HI	GCNGC	4 cut(s)	74, 98, 140, 290
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	4 cut(s)	74, 98, 140, 290
GsuI	CTGGAG	2 cut(s)	693, 729
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	3 cut(s)	62, 778, 839
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	4 cut(s)	88, 194, 286, 354
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	1 cut(s)	824
HphI	GGTGA	3 cut(s)	206, 229, 804
Hpy166II	GTNNAC	2 cut(s)	39, 81
Hpy188I	TCNGA	3 cut(s)	58, 319, 691
Hpy188III	TCNNGA	1 cut(s)	746
Hpy8I	GTNNAC	2 cut(s)	39, 81
Hpy99I	CGWCG	2 cut(s)	13, 43
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	2 cut(s)	117, 665
HpyCH4IV	ACGT	2 cut(s)	41, 435
HpyCH4V	TGCA	5 cut(s)	433, 549, 603, 657, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	298, 430, 784
HpyF3I	CTNAG	2 cut(s)	688, 783
HpySE526I	ACGT	2 cut(s)	41, 435
Hsp92II	CATG	4 cut(s)	88, 194, 286, 354
HspAI	GCGC	1 cut(s)	473
Kzo9I	GATC	4 cut(s)	88, 425, 622, 637
Lsp1109I	GCAGC	2 cut(s)	151, 276
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	2 cut(s)	41, 435
MaeIII	GTNAC	3 cut(s)	560, 614, 725
MalI	GATC	4 cut(s)	90, 427, 624, 639
MboI	GATC	4 cut(s)	88, 425, 622, 637
MboII	GAAGA	4 cut(s)	290, 478, 596, 854
MfeI	CAATTG	1 cut(s)	816
MflI	RGATCY	1 cut(s)	622
MluCI	AATT	3 cut(s)	339, 387, 816
MnlI	CCTC	9 cut(s)	12, 52, 175, 462, 589, 685, 753, 798, 820
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	1 cut(s)	632
MslI	CAYNNNNRTG	2 cut(s)	355, 708
MspA1I	CMGCKG	2 cut(s)	100, 142
MspR9I	CCNGG	3 cut(s)	370, 535, 672
MunI	CAATTG	1 cut(s)	816
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	3 cut(s)	370, 535, 672
MvnI	CGCG	1 cut(s)	458
MwoI	GCNNNNNNNGC	3 cut(s)	298, 430, 784
NcoI	CCATGG	2 cut(s)	84, 350
NdeII	GATC	4 cut(s)	88, 425, 622, 637
NlaIII	CATG	4 cut(s)	88, 194, 286, 354
NlaIV	GGNNCC	2 cut(s)	257, 624
NmuCI	GTSAC	1 cut(s)	560
OliI	CACNNNNGTG	1 cut(s)	708
PctI	GAATGC	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	1 cut(s)	824
PflMI	CCANNNNNTGG	1 cut(s)	69
PfoI	TCCNGGA	1 cut(s)	670
PkrI	GCNGC	4 cut(s)	75, 99, 141, 291
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	436
Psp6I	CCWGG	3 cut(s)	368, 533, 670
PspCI	CACGTG	1 cut(s)	436
PspGI	CCWGG	3 cut(s)	368, 533, 670
PspN4I	GGNNCC	2 cut(s)	257, 624
PsuI	RGATCY	1 cut(s)	622
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	3 cut(s)	348, 686, 798
RsaNI	GTAC	3 cut(s)	347, 685, 797
RseI	CAYNNNNRTG	2 cut(s)	355, 708
SalI	GTCGAC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	632
SatI	GCNGC	4 cut(s)	74, 98, 140, 290
Sau3AI	GATC	4 cut(s)	88, 425, 622, 637
ScrFI	CCNGG	3 cut(s)	370, 535, 672
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	528
SmiMI	CAYNNNNRTG	2 cut(s)	355, 708
Sse9I	AATT	3 cut(s)	339, 387, 816
SsiI	CCGC	6 cut(s)	73, 76, 98, 292, 458, 488
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	3 cut(s)	368, 533, 670
StyI	CCWWGG	2 cut(s)	84, 350
TaaI	ACNGT	2 cut(s)	117, 665
TaiI	ACGT	2 cut(s)	44, 438
TaqI	TCGA	4 cut(s)	38, 207, 262, 509
TasI	AATT	3 cut(s)	339, 387, 816
TauI	GCSGC	2 cut(s)	76, 100
TfiI	GAWTC	1 cut(s)	824
Tru1I	TTAA	1 cut(s)	632
Tru9I	TTAA	1 cut(s)	632
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	2 cut(s)	139, 289
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	2 cut(s)	193, 437
TspRI	CASTG	1 cut(s)	571
Van91I	CCANNNNNTGG	1 cut(s)	69
XmiI	GTMKAC	2 cut(s)	38, 80
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.