Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Reverse (-)

87741454 .. 87742367

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54269

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCATCGTCGGTGTGGAGGTCGGACGGGTGGTGGTCGGCGTGGAGTATGTGGTCAGAGGCCAGATCATGGCGGCGGTATACCATGGATCGTATGGCGCTGACTTCTAATCTACGGTGGGTCGCTAGACGGAGATGGCAGCTGTGGTGGATCTGGGTTTTCAAGGTGGTGGGCATGGCAGAGGCAAGGCACAGTGAGTCTTTCATCGATTTCTTGTTGATAGATTGGCTGTGGTTTGCTGTATGGTTTAGCAGGCACCTTCGACTTGGGGAGATTGAAGACATGAGGCTGCGGTGGTGGATTGCCGGCGGGTCATCTGACGACAAGGGTGAGGAGTACTGTGGCGGCGACTTCTTTCCTTTGGTTAAAGTCTTGGTTTTAGTTAGGTTGCTTTTTAGTTTACTTTGGTTATTGGTTAGTTTACTTTGGTCAATAGTTGGTCCCTACTCGTTTGAGCTAGGGTTGGGTCAAATTGATGTGCCATGGATGTGGTGTCTTTCCTGGGGACGAGTTGGTGTAATTTCGGTTTTATCTTATGGTCAATGTGCTAACAAGCGATCCTTGCACGTGGTCTGGTTTTATTGGGGCGCGGTGTGGAAGAGGGCGCTGGTTTCTCTGGCGGTTGTCTATGGGGTGTTATCGAGTTTCTCGGGGTTATCTGTAGCCTGTGAGGTTGGGCGAAATAGGTGGTTAGGGGTTGGGCTCTTTTGGCTCATGGATGTCATCCTGGATGACGGACCCGTAACTAGTTCAGTTTTTAGGGAGGAGAGTGGGGAGTTCTTGTCCATCACCGGTCATTCCCATATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

31.52

Weight (kDa)

8.39

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	80
AccII	CGCG	1 cut(s)	590
AciI	CCGC	7 cut(s)	73, 76, 292, 309, 345, 590, 620
AclWI	GGATC	3 cut(s)	96, 158, 552
AcvI	CACGTG	1 cut(s)	568
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgeI	ACCGGT	1 cut(s)	791
AgsI	TTSAA	2 cut(s)	163, 278
AhlI	ACTAGT	1 cut(s)	746
AjnI	CCWGG	2 cut(s)	500, 726
AluBI	AGCT	2 cut(s)	142, 457
AluI	AGCT	2 cut(s)	142, 457
AlwI	GGATC	3 cut(s)	96, 158, 552
Ama87I	CYCGRG	1 cut(s)	649
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	139, 289
AsiGI	ACCGGT	1 cut(s)	791
AspLEI	GCGC	3 cut(s)	100, 590, 607
AspS9I	GGNCC	2 cut(s)	440, 737
AsuHPI	GGTGA	2 cut(s)	341, 781
AvaI	CYCGRG	1 cut(s)	649
AvaII	GGWCC	2 cut(s)	440, 737
BanI	GGYRCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	705
BbrPI	CACGTG	1 cut(s)	568
BbsI	GAAGAC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	151, 276
BccI	CCATC	2 cut(s)	129, 794
BciT130I	CCWGG	2 cut(s)	502, 728
BcuI	ACTAGT	1 cut(s)	746
BfaI	CTAG	3 cut(s)	126, 458, 747
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	2 cut(s)	101, 608
BisI	GCNGC	4 cut(s)	74, 140, 290, 346
BlsI	GCNGC	4 cut(s)	75, 141, 291, 347
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	2 cut(s)	502, 728
Bme18I	GGWCC	2 cut(s)	440, 737
BmeT110I	CYCGRG	1 cut(s)	649
BmgT120I	GGNCC	2 cut(s)	440, 737
BmiI	GGNNCC	3 cut(s)	257, 442, 739
BmrFI	CCNGG	2 cut(s)	502, 728
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	568
BsaJI	CCNNGG	3 cut(s)	84, 482, 501
BsaWI	WCCGGW	1 cut(s)	791
BsaXI	ACNNNNNCTCC	2 cut(s)	767, 797
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	2 cut(s)	305, 791
BseBI	CCWGG	2 cut(s)	502, 728
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	84, 482, 501
BseGI	GGATG	4 cut(s)	492, 723, 724, 736
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	347, 779
BseXI	GCAGC	2 cut(s)	151, 276
Bsh1236I	CGCG	1 cut(s)	590
BshFI	GGCC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	255
BshTI	ACCGGT	1 cut(s)	791
BshVI	ATCGAT	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	649
BsiSI	CCGG	2 cut(s)	306, 792
BslFI	GGGAC	2 cut(s)	426, 519
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmFI	GGGAC	2 cut(s)	426, 519
BsnI	GGCC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	649
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp143I	GATC	4 cut(s)	65, 88, 150, 557
Bsp19I	CCATGG	2 cut(s)	84, 482
BspACI	CCGC	7 cut(s)	73, 76, 292, 309, 345, 590, 620
BspANI	GGCC	1 cut(s)	62
BspDI	ATCGAT	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	590
BspLI	GGNNCC	3 cut(s)	257, 442, 739
BspPI	GGATC	3 cut(s)	96, 158, 552
BspT107I	GGYRCC	1 cut(s)	255
BsrFI	RCCGGY	2 cut(s)	305, 791
BssAI	RCCGGY	2 cut(s)	305, 791
BssECI	CCNNGG	3 cut(s)	84, 482, 501
BssMI	GATC	4 cut(s)	65, 88, 150, 557
BssNAI	GTATAC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	84, 482
Bst1107I	GTATAC	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	502, 728
Bst4CI	ACNGT	3 cut(s)	117, 194, 341
Bst6I	CTCTTC	1 cut(s)	593
BstBAI	YACGTR	1 cut(s)	568
BstC8I	GCNNGC	2 cut(s)	254, 307
BstDSI	CCRYGG	2 cut(s)	84, 482
BstF5I	GGATG	4 cut(s)	492, 723, 724, 736
BstFNI	CGCG	1 cut(s)	590
BstH2I	RGCGCY	2 cut(s)	101, 608
BstHHI	GCGC	3 cut(s)	100, 590, 607
BstKTI	GATC	4 cut(s)	68, 91, 153, 560
BstMBI	GATC	4 cut(s)	65, 88, 150, 557
BstMWI	GCNNNNNNNGC	2 cut(s)	562, 709
BstNI	CCWGG	2 cut(s)	502, 728
BstSCI	CCNGG	2 cut(s)	500, 726
BstSFI	CTRYAG	1 cut(s)	660
BstUI	CGCG	1 cut(s)	590
BstV1I	GCAGC	2 cut(s)	151, 276
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	150
BstZ17I	GTATAC	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	62
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	2 cut(s)	84, 482
BtsCI	GGATG	4 cut(s)	492, 723, 724, 736
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	254, 307
CfoI	GCGC	3 cut(s)	100, 590, 607
Cfr10I	RCCGGY	2 cut(s)	305, 791
Cfr13I	GGNCC	2 cut(s)	440, 737
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	337
CspAI	ACCGGT	1 cut(s)	791
CviAII	CATG	6 cut(s)	69, 85, 175, 283, 483, 715
CviJI	RGCY	8 cut(s)	62, 142, 229, 289, 457, 665, 703, 712
CviKI_1	RGCY	8 cut(s)	62, 142, 229, 289, 457, 665, 703, 712
CviQI	GTAC	1 cut(s)	337
DpnI	GATC	4 cut(s)	67, 90, 152, 559
DpnII	GATC	4 cut(s)	65, 88, 150, 557
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
Eco130I	CCWWGG	2 cut(s)	84, 482
Eco24I	GRGCYC	1 cut(s)	705
Eco47I	GGWCC	2 cut(s)	440, 737
Eco72I	CACGTG	1 cut(s)	568
Eco88I	CYCGRG	1 cut(s)	649
EcoRII	CCWGG	2 cut(s)	500, 726
EcoT14I	CCWWGG	2 cut(s)	84, 482
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	2 cut(s)	84, 482
FaeI	CATG	6 cut(s)	72, 88, 178, 286, 486, 718
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FaqI	GGGAC	2 cut(s)	426, 519
FatI	CATG	6 cut(s)	68, 84, 174, 282, 482, 714
FauI	CCCGC	1 cut(s)	302
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	4 cut(s)	74, 140, 290, 346
FokI	GGATG	4 cut(s)	499, 710, 731, 743
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	4 cut(s)	74, 140, 290, 346
FspBI	CTAG	3 cut(s)	126, 458, 747
GlaI	GCGC	3 cut(s)	99, 589, 606
GluI	GCNGC	4 cut(s)	74, 140, 290, 346
HaeII	RGCGCY	2 cut(s)	101, 608
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	2 cut(s)	306, 792
HhaI	GCGC	3 cut(s)	100, 590, 607
Hin1II	CATG	6 cut(s)	72, 88, 178, 286, 486, 718
Hin6I	GCGC	3 cut(s)	98, 588, 605
HinP1I	GCGC	3 cut(s)	98, 588, 605
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	306, 792
HphI	GGTGA	2 cut(s)	341, 781
Hpy166II	GTNNAC	3 cut(s)	81, 401, 422
Hpy188I	TCNGA	3 cut(s)	25, 58, 319
Hpy8I	GTNNAC	3 cut(s)	81, 401, 422
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	3 cut(s)	117, 194, 341
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	1 cut(s)	565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	562, 709
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	6 cut(s)	72, 88, 178, 286, 486, 718
HspAI	GCGC	3 cut(s)	98, 588, 605
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	65, 88, 150, 557
Lsp1109I	GCAGC	2 cut(s)	151, 276
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	3 cut(s)	126, 458, 747
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	1 cut(s)	742
MalI	GATC	4 cut(s)	67, 90, 152, 559
MboI	GATC	4 cut(s)	65, 88, 150, 557
MboII	GAAGA	2 cut(s)	290, 610
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	705
MluCI	AATT	2 cut(s)	471, 519
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	8 cut(s)	12, 52, 175, 279, 325, 594, 664, 757
MroNI	GCCGGC	1 cut(s)	305
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	487
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	2 cut(s)	306, 792
MspR9I	CCNGG	2 cut(s)	502, 728
MvaI	CCWGG	2 cut(s)	502, 728
MvnI	CGCG	1 cut(s)	590
MwoI	GCNNNNNNNGC	2 cut(s)	562, 709
NaeI	GCCGGC	1 cut(s)	307
NcoI	CCATGG	2 cut(s)	84, 482
NdeII	GATC	4 cut(s)	65, 88, 150, 557
NgoMIV	GCCGGC	1 cut(s)	305
NlaIII	CATG	6 cut(s)	72, 88, 178, 286, 486, 718
NlaIV	GGNNCC	3 cut(s)	257, 442, 739
PdiI	GCCGGC	1 cut(s)	307
PflMI	CCANNNNNTGG	1 cut(s)	69
PfoI	TCCNGGA	1 cut(s)	726
PinAI	ACCGGT	1 cut(s)	791
PkrI	GCNGC	4 cut(s)	75, 141, 291, 347
PleI	GAGTC	1 cut(s)	205
PmaCI	CACGTG	1 cut(s)	568
PmlI	CACGTG	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	205
Ppu21I	YACGTR	1 cut(s)	568
Psp6I	CCWGG	2 cut(s)	500, 726
PspCI	CACGTG	1 cut(s)	568
PspGI	CCWGG	2 cut(s)	500, 726
PspN4I	GGNNCC	3 cut(s)	257, 442, 739
PspPI	GGNCC	2 cut(s)	440, 737
PsuI	RGATCY	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	487
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	4 cut(s)	74, 140, 290, 346
Sau3AI	GATC	4 cut(s)	65, 88, 150, 557
Sau96I	GGNCC	2 cut(s)	440, 737
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	502, 728
SduI	GDGCHC	1 cut(s)	705
SetI	ASST	9 cut(s)	23, 144, 168, 261, 389, 459, 570, 675, 689
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	2 cut(s)	440, 737
SmiMI	CAYNNNNRTG	1 cut(s)	487
SpeI	ACTAGT	1 cut(s)	746
Sse9I	AATT	2 cut(s)	471, 519
SsiI	CCGC	7 cut(s)	73, 76, 292, 309, 345, 590, 620
SspMI	CTAG	3 cut(s)	126, 458, 747
StyD4I	CCNGG	2 cut(s)	500, 726
StyI	CCWWGG	2 cut(s)	84, 482
TaaI	ACNGT	3 cut(s)	117, 194, 341
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	3 cut(s)	207, 262, 641
TasI	AATT	2 cut(s)	471, 519
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	2 cut(s)	76, 348
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	2 cut(s)	139, 289
TspDTI	ATGAA	1 cut(s)	193
TspGWI	ACGGA	2 cut(s)	145, 750
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	440, 737
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	3 cut(s)	126, 458, 747
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.