Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Forward (+)

13352594 .. 13353440

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17487

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCATCGTCGGTGTGGAGGTCGGATGGGTGGTGGTCGGCGTGGAGTATGTGGTCAGAGGCCAGATCATGGCGGCGGTATACCATGGATCGTATGGCGCTGACTTCTAATCTACGGCGGGTCGATAGACGGAGATGGCAGTTGTGGTGGATCTGGGTTTTCAAGGTGGTGGGCATGGCAGAGGCAAGGCACAGTGAGCACCTTCGACTTGGGGAGATTGAAGACATGAGGCTGCGGTGGTGGATTGCCGGTGAGTCATCTGACGACAAGGGTGAGGAGTACTGTGGCGGCGACTTCTTTCCTTTGGTTAAAGTCTTGGTTTTAGTTAGGTTGCTTTTTAGTTTACTTTGGTTATTGGTTAGTTTACTTTGGTCAATAGTTGGTCCCTACTCGTTTGAGCTAGGGTTGGGTCAAATTGATGTGCCATGGATGTGGTGTCTTTCCTGGGGACGAGTTGGTGTAATTTCGGTTTTATCTTATGGTCAATGTGCTAACAAGCGATCATTGCACGTGGTCTGGTTTCATTGGGGCGCGGTGTGGAAGAGGGCGCTGGTTTCTCTGGCGGTTGTCTATGGGGTGTTATCGAGTTTCTCGGGGTTATCTGTAGCCTGTGAGGTTGGGCGAAATAGGTGGTTAGGGGTTGGGCTCTTTTGGCTCATGGATGTCATCCTGGATGACGGACCCGTAACTAGTTCGGTTTTTAGGGAGGAGAGTGGGGAGTTCTTGTCCACCACCGGTCATTCCCATATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

29.13

Weight (kDa)

8.4

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	80
AccII	CGCG	1 cut(s)	533
AciI	CCGC	7 cut(s)	73, 76, 118, 235, 288, 533, 563
AclWI	GGATC	2 cut(s)	96, 158
AcvI	CACGTG	1 cut(s)	511
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgeI	ACCGGT	1 cut(s)	734
AgsI	TTSAA	2 cut(s)	163, 221
AhlI	ACTAGT	1 cut(s)	689
AjnI	CCWGG	2 cut(s)	443, 669
AluBI	AGCT	1 cut(s)	400
AluI	AGCT	1 cut(s)	400
Alw21I	GWGCWC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	96, 158
Ama87I	CYCGRG	1 cut(s)	592
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	232
AsiGI	ACCGGT	1 cut(s)	734
AspLEI	GCGC	3 cut(s)	100, 533, 550
AspS9I	GGNCC	2 cut(s)	383, 680
AsuHPI	GGTGA	2 cut(s)	263, 284
AvaI	CYCGRG	1 cut(s)	592
AvaII	GGWCC	2 cut(s)	383, 680
BanII	GRGCYC	1 cut(s)	648
BbrPI	CACGTG	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	2 cut(s)	20, 129
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	2 cut(s)	445, 671
BcuI	ACTAGT	1 cut(s)	689
BfaI	CTAG	2 cut(s)	401, 690
BfmI	CTRYAG	1 cut(s)	603
BfoI	RGCGCY	2 cut(s)	101, 551
BisI	GCNGC	3 cut(s)	74, 233, 289
BlsI	GCNGC	3 cut(s)	75, 234, 290
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	445, 671
Bme18I	GGWCC	2 cut(s)	383, 680
BmeT110I	CYCGRG	1 cut(s)	592
BmgT120I	GGNCC	2 cut(s)	383, 680
BmiI	GGNNCC	2 cut(s)	385, 682
BmrFI	CCNGG	2 cut(s)	445, 671
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	511
BsaJI	CCNNGG	3 cut(s)	84, 425, 444
BsaWI	WCCGGW	1 cut(s)	734
BsaXI	ACNNNNNCTCC	2 cut(s)	710, 740
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	2 cut(s)	248, 734
Bse3DI	GCAATG	1 cut(s)	503
BseBI	CCWGG	2 cut(s)	445, 671
BseDI	CCNNGG	3 cut(s)	84, 425, 444
BseGI	GGATG	5 cut(s)	31, 435, 666, 667, 679
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	503
BseRI	GAGGAG	2 cut(s)	290, 722
BseXI	GCAGC	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	533
BshFI	GGCC	1 cut(s)	62
BshTI	ACCGGT	1 cut(s)	734
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	2 cut(s)	249, 735
BslFI	GGGAC	2 cut(s)	369, 462
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmFI	GGGAC	2 cut(s)	369, 462
BsnI	GGCC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	592
Bsp1286I	GDGCHC	2 cut(s)	201, 648
Bsp143I	GATC	4 cut(s)	65, 88, 150, 500
Bsp19I	CCATGG	2 cut(s)	84, 425
BspACI	CCGC	7 cut(s)	73, 76, 118, 235, 288, 533, 563
BspANI	GGCC	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	533
BspLI	GGNNCC	2 cut(s)	385, 682
BspPI	GGATC	2 cut(s)	96, 158
BsrDI	GCAATG	1 cut(s)	503
BsrFI	RCCGGY	2 cut(s)	248, 734
BssAI	RCCGGY	2 cut(s)	248, 734
BssECI	CCNNGG	3 cut(s)	84, 425, 444
BssMI	GATC	4 cut(s)	65, 88, 150, 500
BssNAI	GTATAC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	84, 425
Bst1107I	GTATAC	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	445, 671
Bst4CI	ACNGT	2 cut(s)	194, 284
Bst6I	CTCTTC	1 cut(s)	536
BstBAI	YACGTR	1 cut(s)	511
BstDSI	CCRYGG	2 cut(s)	84, 425
BstF5I	GGATG	5 cut(s)	31, 435, 666, 667, 679
BstFNI	CGCG	1 cut(s)	533
BstH2I	RGCGCY	2 cut(s)	101, 551
BstHHI	GCGC	3 cut(s)	100, 533, 550
BstKTI	GATC	4 cut(s)	68, 91, 153, 503
BstMBI	GATC	4 cut(s)	65, 88, 150, 500
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 505, 652
BstNI	CCWGG	2 cut(s)	445, 671
BstSCI	CCNGG	2 cut(s)	443, 669
BstSFI	CTRYAG	1 cut(s)	603
BstUI	CGCG	1 cut(s)	533
BstV1I	GCAGC	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	150
BstZ17I	GTATAC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	2 cut(s)	84, 425
BtsCI	GGATG	5 cut(s)	31, 435, 666, 667, 679
BtsIMutI	CAGTG	1 cut(s)	199
CfoI	GCGC	3 cut(s)	100, 533, 550
Cfr10I	RCCGGY	2 cut(s)	248, 734
Cfr13I	GGNCC	2 cut(s)	383, 680
Csp6I	GTAC	1 cut(s)	280
CspAI	ACCGGT	1 cut(s)	734
CviAII	CATG	6 cut(s)	69, 85, 175, 226, 426, 658
CviJI	RGCY	6 cut(s)	62, 232, 400, 608, 646, 655
CviKI_1	RGCY	6 cut(s)	62, 232, 400, 608, 646, 655
CviQI	GTAC	1 cut(s)	280
DpnI	GATC	4 cut(s)	67, 90, 152, 502
DpnII	GATC	4 cut(s)	65, 88, 150, 500
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
Eco130I	CCWWGG	2 cut(s)	84, 425
Eco24I	GRGCYC	1 cut(s)	648
Eco47I	GGWCC	2 cut(s)	383, 680
Eco72I	CACGTG	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	592
EcoRII	CCWGG	2 cut(s)	443, 669
EcoT14I	CCWWGG	2 cut(s)	84, 425
EcoT38I	GRGCYC	1 cut(s)	648
ErhI	CCWWGG	2 cut(s)	84, 425
FaeI	CATG	6 cut(s)	72, 88, 178, 229, 429, 661
FaqI	GGGAC	2 cut(s)	369, 462
FatI	CATG	6 cut(s)	68, 84, 174, 225, 425, 657
FauI	CCCGC	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	3 cut(s)	74, 233, 289
FokI	GGATG	5 cut(s)	38, 442, 653, 674, 686
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	3 cut(s)	74, 233, 289
FspBI	CTAG	2 cut(s)	401, 690
GlaI	GCGC	3 cut(s)	99, 532, 549
GluI	GCNGC	3 cut(s)	74, 233, 289
HaeII	RGCGCY	2 cut(s)	101, 551
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	2 cut(s)	249, 735
HhaI	GCGC	3 cut(s)	100, 533, 550
Hin1II	CATG	6 cut(s)	72, 88, 178, 229, 429, 661
Hin6I	GCGC	3 cut(s)	98, 531, 548
HinP1I	GCGC	3 cut(s)	98, 531, 548
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	2 cut(s)	249, 735
HphI	GGTGA	2 cut(s)	263, 284
Hpy166II	GTNNAC	4 cut(s)	81, 344, 365, 729
Hpy188I	TCNGA	3 cut(s)	25, 58, 262
Hpy8I	GTNNAC	4 cut(s)	81, 344, 365, 729
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	2 cut(s)	194, 284
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	1 cut(s)	508
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 505, 652
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	6 cut(s)	72, 88, 178, 229, 429, 661
HspAI	GCGC	3 cut(s)	98, 531, 548
Kzo9I	GATC	4 cut(s)	65, 88, 150, 500
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	401, 690
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	4 cut(s)	67, 90, 152, 502
MboI	GATC	4 cut(s)	65, 88, 150, 500
MboII	GAAGA	2 cut(s)	233, 553
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	201, 648
MluCI	AATT	2 cut(s)	414, 462
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	8 cut(s)	12, 52, 175, 222, 268, 537, 607, 700
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	430
MspI	CCGG	2 cut(s)	249, 735
MspR9I	CCNGG	2 cut(s)	445, 671
MvaI	CCWGG	2 cut(s)	445, 671
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	3 cut(s)	196, 505, 652
NcoI	CCATGG	2 cut(s)	84, 425
NdeII	GATC	4 cut(s)	65, 88, 150, 500
NlaIII	CATG	6 cut(s)	72, 88, 178, 229, 429, 661
NlaIV	GGNNCC	2 cut(s)	385, 682
PflMI	CCANNNNNTGG	1 cut(s)	69
PfoI	TCCNGGA	1 cut(s)	669
PinAI	ACCGGT	1 cut(s)	734
PkrI	GCNGC	3 cut(s)	75, 234, 290
PleI	GAGTC	1 cut(s)	262
PmaCI	CACGTG	1 cut(s)	511
PmlI	CACGTG	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	262
Ppu21I	YACGTR	1 cut(s)	511
Psp6I	CCWGG	2 cut(s)	443, 669
PspCI	CACGTG	1 cut(s)	511
PspGI	CCWGG	2 cut(s)	443, 669
PspN4I	GGNNCC	2 cut(s)	385, 682
PspPI	GGNCC	2 cut(s)	383, 680
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	74, 233, 289
Sau3AI	GATC	4 cut(s)	65, 88, 150, 500
Sau96I	GGNCC	2 cut(s)	383, 680
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	2 cut(s)	445, 671
SduI	GDGCHC	2 cut(s)	201, 648
SetI	ASST	8 cut(s)	23, 168, 204, 332, 402, 513, 618, 632
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	603
SinI	GGWCC	2 cut(s)	383, 680
SmiMI	CAYNNNNRTG	1 cut(s)	430
SpeI	ACTAGT	1 cut(s)	689
Sse9I	AATT	2 cut(s)	414, 462
SsiI	CCGC	7 cut(s)	73, 76, 118, 235, 288, 533, 563
SspMI	CTAG	2 cut(s)	401, 690
StyD4I	CCNGG	2 cut(s)	443, 669
StyI	CCWWGG	2 cut(s)	84, 425
TaaI	ACNGT	2 cut(s)	194, 284
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	3 cut(s)	123, 205, 584
TasI	AATT	2 cut(s)	414, 462
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	2 cut(s)	76, 291
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	512
TspGWI	ACGGA	2 cut(s)	145, 693
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	383, 680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	2 cut(s)	401, 690
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.