Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Forward (+)

4290245 .. 4293988

Gene Structure 3744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCGCCGTGGGCGGTTATGGAGGGTGGTGAAGCTCGGGCGGTGGCTAGATGGGATCGAGAGTTAACGAAAGTTGTCGGCCTATCCGGCGGCGCCCCCGCGTCGGCCGTGGCTCCTCGCTTCATTGACGAGTGGCGGGTGTTGCCGGACGGGGTCTTAGGATCTCGGGGTCCTACTTTGTTCTTCGTTTTGCTGGTCAAGGCCGGGTACTTTTCTTCACTTCTCTCGGGTGGCGTCGTTGGTGTGGAGGACGGATGGGTGGCGGTCGGAGTGGAGAAAGTGGTCGAGGCCGGATCATGGCTACGGTATACCATGGATCGTGTGGCACTTTCTTCTAATCTACGGTGGGTCGCTAGACGGAGGTGGCACTGTGGTGGATCCGGGCTTTCAAGTTGGTGGGCATGGCGGAGGCAAGGCACGACTAGGAAACTTCTAAAAGCTAGGAAACACAGGAGAAAGGAAATCATCCCGTCAATGGAATTGTCCAGAAGAATAGTCACGCTTGATATCATCTCAAAGATTTTGGTGGTGAAGGAAACCATCCTGTCAATGCAATTGAGTTATTCAATCTTCGTCATGCTTCCTTCAGAATGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.2

Weight (kDa)

10.4

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	308
AccII	CGCG	1 cut(s)	101
AciI	CCGC	7 cut(s)	14, 41, 90, 99, 136, 263, 406
AclWI	GGATC	6 cut(s)	63, 169, 301, 324, 372, 385
AcoI	YGGCCR	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	570
AcyI	GRCGYC	2 cut(s)	93, 234
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	103, 297, 475
AgsI	TTSAA	2 cut(s)	390, 567
AleI	CACNNNNGTG	1 cut(s)	372
AluBI	AGCT	2 cut(s)	35, 440
AluI	AGCT	2 cut(s)	35, 440
AlwI	GGATC	6 cut(s)	63, 169, 301, 324, 372, 385
Ama87I	CYCGRG	3 cut(s)	36, 165, 226
AoxI	GGCC	4 cut(s)	79, 105, 201, 288
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	2 cut(s)	205, 382
AsuHPI	GGTGA	2 cut(s)	41, 541
AvaI	CYCGRG	3 cut(s)	36, 165, 226
AvaII	GGWCC	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	92
BccI	CCATC	3 cut(s)	45, 249, 548
BceAI	ACGGC	1 cut(s)	92
BcnI	CCSGG	2 cut(s)	205, 382
BfaI	CTAG	4 cut(s)	48, 354, 423, 441
BfoI	RGCGCY	1 cut(s)	96
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	2 cut(s)	205, 382
Bme18I	GGWCC	1 cut(s)	170
BmeT110I	CYCGRG	3 cut(s)	36, 165, 226
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	4 cut(s)	94, 114, 171, 379
BmrFI	CCNGG	2 cut(s)	205, 382
BpuMI	CCSGG	2 cut(s)	205, 382
BsaHI	GRCGYC	2 cut(s)	93, 234
BsaJI	CCNNGG	3 cut(s)	8, 108, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 297, 475
BseDI	CCNNGG	3 cut(s)	8, 108, 312
BseGI	GGATG	3 cut(s)	260, 465, 540
BseLI	CCNNNNNNNGG	3 cut(s)	103, 297, 475
BseRI	GAGGAG	1 cut(s)	105
BseX3I	CGGCCG	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	101
Bsh1285I	CGRYCG	2 cut(s)	108, 267
BshFI	GGCC	4 cut(s)	81, 107, 203, 290
BshNI	GGYRCC	1 cut(s)	92
BsiEI	CGRYCG	2 cut(s)	108, 267
BsiHKCI	CYCGRG	3 cut(s)	36, 165, 226
BsiSI	CCGG	5 cut(s)	87, 146, 204, 291, 381
BslI	CCNNNNNNNGG	3 cut(s)	103, 297, 475
BsnI	GGCC	4 cut(s)	81, 107, 203, 290
BsoBI	CYCGRG	3 cut(s)	36, 165, 226
Bsp143I	GATC	5 cut(s)	55, 161, 293, 316, 377
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	7 cut(s)	14, 41, 90, 99, 136, 263, 406
BspANI	GGCC	4 cut(s)	81, 107, 203, 290
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	4 cut(s)	94, 114, 171, 379
BspPI	GGATC	6 cut(s)	63, 169, 301, 324, 372, 385
BspT107I	GGYRCC	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	8, 108, 312
BssMI	GATC	5 cut(s)	55, 161, 293, 316, 377
BssNAI	GTATAC	1 cut(s)	309
BssNI	GRCGYC	2 cut(s)	93, 234
BssT1I	CCWWGG	1 cut(s)	312
Bst1107I	GTATAC	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	306, 345, 371
BstACI	GRCGYC	2 cut(s)	93, 234
BstDEI	CTNAG	1 cut(s)	157
BstDSI	CCRYGG	3 cut(s)	8, 108, 312
BstF5I	GGATG	3 cut(s)	260, 465, 540
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	5 cut(s)	58, 164, 296, 319, 380
BstMBI	GATC	5 cut(s)	55, 161, 293, 316, 377
BstMCI	CGRYCG	2 cut(s)	108, 267
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 142
BstSCI	CCNGG	2 cut(s)	203, 380
BstUI	CGCG	1 cut(s)	101
BstX2I	RGATCY	2 cut(s)	161, 377
BstYI	RGATCY	2 cut(s)	161, 377
BstZ17I	GTATAC	1 cut(s)	309
BstZI	CGGCCG	1 cut(s)	105
BsuRI	GGCC	4 cut(s)	81, 107, 203, 290
BtgI	CCRYGG	3 cut(s)	8, 108, 312
BtsCI	GGATG	3 cut(s)	260, 465, 540
BtsIMutI	CAGTG	1 cut(s)	367
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	2 cut(s)	90, 223
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	4 cut(s)	297, 313, 402, 577
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	157
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	5 cut(s)	57, 163, 295, 318, 379
DpnII	GATC	5 cut(s)	55, 161, 293, 316, 377
EaeI	YGGCCR	1 cut(s)	105
EagI	CGGCCG	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	421
EclXI	CGGCCG	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	170
Eco52I	CGGCCG	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	570
Eco88I	CYCGRG	3 cut(s)	36, 165, 226
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	312
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	4 cut(s)	300, 316, 405, 580
FaiI	YATR	6 cut(s)	20, 298, 309, 314, 403, 578
FatI	CATG	4 cut(s)	296, 312, 401, 576
FauI	CCCGC	2 cut(s)	106, 129
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	1 cut(s)	91
FokI	GGATG	3 cut(s)	267, 452, 527
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	4 cut(s)	48, 354, 423, 441
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	91
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	4 cut(s)	81, 107, 203, 290
HapII	CCGG	5 cut(s)	87, 146, 204, 291, 381
HgaI	GACGC	2 cut(s)	90, 223
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	2 cut(s)	93, 234
Hin1II	CATG	4 cut(s)	300, 316, 405, 580
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HpaI	GTTAAC	1 cut(s)	66
HpaII	CCGG	5 cut(s)	87, 146, 204, 291, 381
HphI	GGTGA	2 cut(s)	41, 541
Hpy166II	GTNNAC	2 cut(s)	66, 309
Hpy188I	TCNGA	2 cut(s)	269, 589
Hpy188III	TCNNGA	2 cut(s)	59, 486
Hpy8I	GTNNAC	2 cut(s)	66, 309
Hpy99I	CGWCG	2 cut(s)	106, 239
HpyAV	CCTTC	2 cut(s)	526, 594
HpyCH4III	ACNGT	3 cut(s)	306, 345, 371
HpyCH4V	TGCA	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 142
HpyF3I	CTNAG	1 cut(s)	157
Hsp92I	GRCGYC	2 cut(s)	93, 234
Hsp92II	CATG	4 cut(s)	300, 316, 405, 580
HspAI	GCGC	1 cut(s)	93
KasI	GGCGCC	1 cut(s)	92
KspAI	GTTAAC	1 cut(s)	66
Kzo9I	GATC	5 cut(s)	55, 161, 293, 316, 377
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	9 cut(s)	100, 159, 179, 217, 304, 394, 436, 499, 557
MaeI	CTAG	4 cut(s)	48, 354, 423, 441
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	5 cut(s)	57, 163, 295, 318, 379
MboI	GATC	5 cut(s)	55, 161, 293, 316, 377
MboII	GAAGA	5 cut(s)	175, 207, 324, 501, 562
MfeI	CAATTG	1 cut(s)	554
MflI	RGATCY	2 cut(s)	161, 377
MluCI	AATT	3 cut(s)	479, 554, 595
Mly113I	GGCGCC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	6 cut(s)	16, 126, 241, 280, 354, 402
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	372
MspI	CCGG	5 cut(s)	87, 146, 204, 291, 381
MspR9I	CCNGG	2 cut(s)	205, 382
MunI	CAATTG	1 cut(s)	554
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	87, 142
NarI	GGCGCC	1 cut(s)	93
NciI	CCSGG	2 cut(s)	205, 382
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	5 cut(s)	55, 161, 293, 316, 377
NlaIII	CATG	4 cut(s)	300, 316, 405, 580
NlaIV	GGNNCC	4 cut(s)	94, 114, 171, 379
NmuCI	GTSAC	1 cut(s)	496
OliI	CACNNNNGTG	1 cut(s)	372
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	92
PluTI	GGCGCC	1 cut(s)	96
PpuMI	RGGWCCY	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	170
PspN4I	GGNNCC	4 cut(s)	94, 114, 171, 379
PspPI	GGNCC	1 cut(s)	170
PspPPI	RGGWCCY	1 cut(s)	170
PsuI	RGATCY	2 cut(s)	161, 377
PsyI	GACNNNGTC	1 cut(s)	152
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	5 cut(s)	55, 161, 293, 316, 377
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	205, 382
SetI	ASST	3 cut(s)	37, 365, 442
SfoI	GGCGCC	1 cut(s)	94
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	372
Sse9I	AATT	3 cut(s)	479, 554, 595
SsiI	CCGC	7 cut(s)	14, 41, 90, 99, 136, 263, 406
SspDI	GGCGCC	1 cut(s)	92
SspMI	CTAG	4 cut(s)	48, 354, 423, 441
StyD4I	CCNGG	2 cut(s)	203, 380
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	306, 345, 371
TaqI	TCGA	2 cut(s)	58, 285
TasI	AATT	3 cut(s)	479, 554, 595
TauI	GCSGC	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	374
TseFI	GTSAC	1 cut(s)	496
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	1 cut(s)	112
TspGWI	ACGGA	2 cut(s)	267, 373
TspRI	CASTG	1 cut(s)	374
Tth111I	GACNNNGTC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	308
XspI	CTAG	4 cut(s)	48, 354, 423, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.