Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Reverse (-)

64183786 .. 64186742

Gene Structure 2957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG416600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGTCCAGACCCTTTGGATTAGCGATTAAGGAAGCAGAGACTCTCTGGGGACGACGAAGGCCAAAAGTTACCATGCATCCACAAGCTGCAGTCCTGCCTGCTGATATTGGTCTTCACTGTACCGATGAGGAGCTCTGTATGTTTATGTTTTTACAGAAACTTATAAATGGATCACCACCTCCAACAAATGTGATCAATGGTGTAAATCCTTACCAATACATGCCCTCAAATTTACCGCCTGGTAGTCTTTGGTACTTGATTTGCTCTAATGAAAGCAAAGATACAAATCTTGGATACTGGAGGCCCAAAGAGGAGGCATGTAAAATATTCTCAGACTCTACCATCACTGGTTGGAGAACTACCCTTGAATTCTATGAAGGCCGAGCACCTCATGAACGAAAAACCAATTGGGTAATGCAAGAATACTGGATAACTTACGAGAAAGTTTCCGAAAACAGCAAGATAAAGGAAGCCGGTTTGCTTTGCAGAGTCCAATCTATTGGTGCCGAACCGAAATCAAACTGCAAAAACCTCGAGAAAAAGGTTACTTCTGATGTTGCTAATCACTTCACACAACCAGTTGTTCCACTCGTGGAGAAACGTACTGGACACGCTTCCACAAGCAAGCCTCAGGTGATCAAGGATAATGAAACAGGAACGTTAACTGTTACAGAAAGGCTTCCAGATCATCAAATAGAATTCATGCCCGAGACTGAGATAGATTTTCCTTTCGGAGATGACTACATAGAATTGCTGGATCTTGATAGACCAGCATCATTTTCTTCTAGTTCAGATTCAAGTTGCTTGACAATATCATCAGATGAATGCTTCGATTCCCTGGCTTTGTTGGAAGAACTAGAAACCAAAACTAGTCAAGACCGTGCAAATAAGAATGCAGGCTGCAAATTCAGTATTTCAGTATCTCAAAGACCAGATGAGTTGGTTATGTATGCAGCTGCCGCTTCCTCAGGATCTTTGAACAAATCTCCAAGTGAAGAAATGGTCAAAAGTCATTCTTCAGTTCCCAGTTCAACAGTCTGCGTTAAGAGTAAAGAAAAGACTACAATGAAACTGAGCAGAAATCAAAAACCAGACCAAAGGAATGAAGGTTTCTCGAATTCGCATACGACAACACCTCCAGCAGGAAAGAAGGCTACTGTTGTCAAAACTAAGAAGCTTAAGAAAAAGTATCTTTGCTGCTTGCCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

403

Amino Acids

45.05

Weight (kDa)

7.49

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	36 - 142	2.5e-16	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	503
AciI	CCGC	2 cut(s)	236, 960
AclI	AACGTT	1 cut(s)	659
AclWI	GGATC	3 cut(s)	178, 765, 979
AcsI	RAATTY	5 cut(s)	229, 368, 698, 905, 1117
AcuI	CTGAAG	1 cut(s)	1002
AfaI	GTAC	3 cut(s)	121, 254, 604
AfiI	CCNNNNNNNGG	1 cut(s)	1142
AflII	CTTAAG	1 cut(s)	1178
AgsI	TTSAA	4 cut(s)	368, 798, 979, 1032
AhlI	ACTAGT	1 cut(s)	869
AjnI	CCWGG	2 cut(s)	238, 837
AjuI	GAANNNNNNNTTGG	2 cut(s)	391, 423
AluBI	AGCT	4 cut(s)	86, 133, 956, 1177
AluI	AGCT	4 cut(s)	86, 133, 956, 1177
Alw21I	GWGCWC	2 cut(s)	135, 388
Alw26I	GTCTC	2 cut(s)	32, 704
AlwI	GGATC	3 cut(s)	178, 765, 979
Ama87I	CYCGRG	2 cut(s)	533, 707
AoxI	GGCC	3 cut(s)	59, 302, 379
ApeKI	GCWGC	5 cut(s)	86, 900, 953, 956, 1197
ApoI	RAATTY	5 cut(s)	229, 368, 698, 905, 1117
Asp700I	GAANNNNTTC	1 cut(s)	678
AspS9I	GGNCC	1 cut(s)	303
AsuHPI	GGTGA	2 cut(s)	165, 646
AvaI	CYCGRG	2 cut(s)	533, 707
AxyI	CCTNAGG	2 cut(s)	630, 967
BanI	GGYRCC	1 cut(s)	503
BanII	GRGCYC	1 cut(s)	135
BauI	CACGAG	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	104
Bbv12I	GWGCWC	2 cut(s)	135, 388
BbvI	GCAGC	5 cut(s)	73, 887, 943, 965, 1184
BccI	CCATC	1 cut(s)	350
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BciT130I	CCWGG	2 cut(s)	240, 839
BciVI	GTATCC	1 cut(s)	287
BclI	TGATCA	2 cut(s)	192, 636
BcoDI	GTCTC	2 cut(s)	32, 704
BcuI	ACTAGT	1 cut(s)	869
BfaI	CTAG	3 cut(s)	786, 857, 870
BfmI	CTRYAG	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	1178
BfuI	GTATCC	1 cut(s)	287
BisI	GCNGC	6 cut(s)	87, 901, 954, 957, 960, 1198
BlsI	GCNGC	6 cut(s)	88, 902, 955, 958, 961, 1199
Bme1390I	CCNGG	2 cut(s)	240, 839
BmeT110I	CYCGRG	2 cut(s)	533, 707
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	1 cut(s)	505
BmrFI	CCNGG	2 cut(s)	240, 839
BmrI	ACTGGG	1 cut(s)	1020
BmsI	GCATC	2 cut(s)	85, 782
BmuI	ACTGGG	1 cut(s)	1020
BpiI	GAAGAC	1 cut(s)	104
BpmI	CTGGAG	2 cut(s)	319, 1122
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	837
BsaXI	ACNNNNNCTCC	2 cut(s)	1120, 1150
Bsc4I	CCNNNNNNNGG	1 cut(s)	1142
Bse118I	RCCGGY	1 cut(s)	473
Bse1I	ACTGG	6 cut(s)	302, 352, 431, 578, 610, 1026
Bse21I	CCTNAGG	2 cut(s)	630, 967
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	2 cut(s)	240, 839
BseDI	CCNNGG	1 cut(s)	837
BseGI	GGATG	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	1142
BseMII	CTCAG	5 cut(s)	345, 644, 705, 981, 1064
BseNI	ACTGG	6 cut(s)	302, 352, 431, 578, 610, 1026
BseRI	GAGGAG	2 cut(s)	143, 326
BseXI	GCAGC	5 cut(s)	73, 887, 943, 965, 1184
BshFI	GGCC	3 cut(s)	61, 304, 381
BshNI	GGYRCC	1 cut(s)	503
BsiHKAI	GWGCWC	2 cut(s)	135, 388
BsiHKCI	CYCGRG	2 cut(s)	533, 707
BsiSI	CCGG	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	1142
BsmAI	GTCTC	2 cut(s)	32, 704
BsmFI	GGGAC	1 cut(s)	63
BsmI	GAATGC	2 cut(s)	830, 898
BsnI	GGCC	3 cut(s)	61, 304, 381
BsoBI	CYCGRG	2 cut(s)	533, 707
Bsp1286I	GDGCHC	2 cut(s)	135, 388
Bsp143I	GATC	6 cut(s)	170, 192, 636, 685, 757, 971
BspACI	CCGC	2 cut(s)	236, 960
BspANI	GGCC	3 cut(s)	61, 304, 381
BspCNI	CTCAG	5 cut(s)	344, 643, 706, 980, 1065
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	505
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	3 cut(s)	178, 765, 979
BspT107I	GGYRCC	1 cut(s)	503
BspTI	CTTAAG	1 cut(s)	1178
BsrFI	RCCGGY	1 cut(s)	473
BsrI	ACTGG	6 cut(s)	302, 352, 431, 578, 610, 1026
BssAI	RCCGGY	1 cut(s)	473
BssECI	CCNNGG	1 cut(s)	837
BssMI	GATC	6 cut(s)	170, 192, 636, 685, 757, 971
BssSI	CACGAG	1 cut(s)	590
Bst2BI	CACGAG	1 cut(s)	590
Bst2UI	CCWGG	2 cut(s)	240, 839
Bst4CI	ACNGT	5 cut(s)	119, 667, 881, 1036, 1159
BstAFI	CTTAAG	1 cut(s)	1178
BstC8I	GCNNGC	4 cut(s)	99, 626, 898, 1202
BstDEI	CTNAG	6 cut(s)	331, 630, 714, 967, 1073, 1170
BstENI	CCTNNNNNAGG	1 cut(s)	1140
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	6 cut(s)	173, 195, 639, 688, 760, 974
BstMAI	GTCTC	2 cut(s)	32, 704
BstMBI	GATC	6 cut(s)	170, 192, 636, 685, 757, 971
BstMWI	GCNNNNNNNGC	1 cut(s)	959
BstNI	CCWGG	2 cut(s)	240, 839
BstNSI	RCATGY	2 cut(s)	223, 321
BstSCI	CCNGG	2 cut(s)	238, 837
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	5 cut(s)	73, 887, 943, 965, 1184
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	2 cut(s)	757, 971
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	2 cut(s)	757, 971
Bsu36I	CCTNAGG	2 cut(s)	630, 967
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	3 cut(s)	61, 304, 381
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	115, 345
Cac8I	GCNNGC	4 cut(s)	99, 626, 898, 1202
CciI	TCATGA	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	473
Cfr13I	GGNCC	1 cut(s)	303
Csp6I	GTAC	3 cut(s)	120, 253, 603
CviAII	CATG	6 cut(s)	73, 220, 318, 392, 703, 1206
CviQI	GTAC	3 cut(s)	120, 253, 603
DdeI	CTNAG	6 cut(s)	331, 630, 714, 967, 1073, 1170
DpnI	GATC	6 cut(s)	172, 194, 638, 687, 759, 973
DpnII	GATC	6 cut(s)	170, 192, 636, 685, 757, 971
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	1002
Eco81I	CCTNAGG	2 cut(s)	630, 967
Eco88I	CYCGRG	2 cut(s)	533, 707
EcoICRI	GAGCTC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	1140
EcoRI	GAATTC	3 cut(s)	368, 698, 1117
EcoRII	CCWGG	2 cut(s)	238, 837
EcoT22I	ATGCAT	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	6 cut(s)	76, 223, 321, 395, 706, 1209
FalI	AAGNNNNNCTT	2 cut(s)	1000, 1032
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	6 cut(s)	72, 219, 317, 391, 702, 1205
FbaI	TGATCA	2 cut(s)	192, 636
Fnu4HI	GCNGC	6 cut(s)	87, 901, 954, 957, 960, 1198
FokI	GGATG	1 cut(s)	63
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	6 cut(s)	87, 901, 954, 957, 960, 1198
FspBI	CTAG	3 cut(s)	786, 857, 870
GluI	GCNGC	6 cut(s)	87, 901, 954, 957, 960, 1198
GsuI	CTGGAG	2 cut(s)	319, 1122
HaeIII	GGCC	3 cut(s)	61, 304, 381
HapII	CCGG	1 cut(s)	474
Hin1II	CATG	6 cut(s)	76, 223, 321, 395, 706, 1209
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HindIII	AAGCTT	1 cut(s)	1175
HinfI	GANTC	5 cut(s)	40, 335, 489, 794, 833
HpaI	GTTAAC	1 cut(s)	663
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	2 cut(s)	165, 646
Hpy166II	GTNNAC	1 cut(s)	663
Hpy188I	TCNGA	6 cut(s)	334, 451, 553, 734, 793, 820
Hpy188III	TCNNGA	8 cut(s)	6, 392, 535, 683, 761, 875, 969, 1114
Hpy8I	GTNNAC	1 cut(s)	663
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	4 cut(s)	51, 371, 1100, 1144
HpyCH4III	ACNGT	5 cut(s)	119, 667, 881, 1036, 1159
HpyCH4IV	ACGT	2 cut(s)	601, 659
HpyCH4V	TGCA	9 cut(s)	76, 89, 418, 486, 525, 884, 896, 903, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	959
HpyF3I	CTNAG	6 cut(s)	331, 630, 714, 967, 1073, 1170
HpySE526I	ACGT	2 cut(s)	601, 659
Hsp92II	CATG	6 cut(s)	76, 223, 321, 395, 706, 1209
Ksp22I	TGATCA	2 cut(s)	192, 636
KspAI	GTTAAC	1 cut(s)	663
Kzo9I	GATC	6 cut(s)	170, 192, 636, 685, 757, 971
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	5 cut(s)	73, 887, 943, 965, 1184
LweI	GCATC	2 cut(s)	85, 782
MaeI	CTAG	3 cut(s)	786, 857, 870
MaeII	ACGT	2 cut(s)	601, 659
MaeIII	GTNAC	3 cut(s)	67, 544, 667
MalI	GATC	6 cut(s)	172, 194, 638, 687, 759, 973
MboI	GATC	6 cut(s)	170, 192, 636, 685, 757, 971
MboII	GAAGA	5 cut(s)	104, 774, 863, 1007, 1008
MfeI	CAATTG	1 cut(s)	406
MflI	RGATCY	2 cut(s)	757, 971
MhlI	GDGCHC	2 cut(s)	135, 388
MluCI	AATT	7 cut(s)	229, 368, 406, 698, 749, 905, 1117
MlyI	GAGTC	3 cut(s)	34, 329, 498
MmeI	TCCRAC	3 cut(s)	206, 332, 828
Mph1103I	ATGCAT	1 cut(s)	78
MroXI	GAANNNNTTC	1 cut(s)	678
MseI	TTAA	4 cut(s)	27, 662, 1044, 1179
MspA1I	CMGCKG	1 cut(s)	956
MspCI	CTTAAG	1 cut(s)	1178
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	240, 839
MunI	CAATTG	1 cut(s)	406
Mva1269I	GAATGC	2 cut(s)	830, 898
MvaI	CCWGG	2 cut(s)	240, 839
MwoI	GCNNNNNNNGC	1 cut(s)	959
NdeII	GATC	6 cut(s)	170, 192, 636, 685, 757, 971
NlaIII	CATG	6 cut(s)	76, 223, 321, 395, 706, 1209
NlaIV	GGNNCC	1 cut(s)	505
NmeAIII	GCCGAG	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	78
NspI	RCATGY	2 cut(s)	223, 321
PaeR7I	CTCGAG	1 cut(s)	533
PagI	TCATGA	1 cut(s)	391
PctI	GAATGC	2 cut(s)	830, 898
PdmI	GAANNNNTTC	1 cut(s)	678
PfeI	GAWTC	2 cut(s)	794, 833
PkrI	GCNGC	6 cut(s)	88, 902, 955, 958, 961, 1199
PleI	GAGTC	3 cut(s)	34, 329, 497
PpsI	GAGTC	3 cut(s)	34, 329, 497
PsiI	TTATAA	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	135
Psp1406I	AACGTT	1 cut(s)	659
Psp6I	CCWGG	2 cut(s)	238, 837
PspGI	CCWGG	2 cut(s)	238, 837
PspN4I	GGNNCC	1 cut(s)	505
PspPI	GGNCC	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	91
PsuI	RGATCY	2 cut(s)	757, 971
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	3 cut(s)	121, 254, 604
RsaNI	GTAC	3 cut(s)	120, 253, 603
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	4 cut(s)	27, 662, 1044, 1179
SatI	GCNGC	6 cut(s)	87, 901, 954, 957, 960, 1198
Sau3AI	GATC	6 cut(s)	170, 192, 636, 685, 757, 971
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	3 cut(s)	34, 329, 498
ScrFI	CCNGG	2 cut(s)	240, 839
SduI	GDGCHC	2 cut(s)	135, 388
SfaNI	GCATC	2 cut(s)	85, 782
SfcI	CTRYAG	1 cut(s)	87
Sfr274I	CTCGAG	1 cut(s)	533
SlaI	CTCGAG	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	533, 1178
SmoI	CTYRAG	2 cut(s)	533, 1178
SpeI	ACTAGT	1 cut(s)	869
Sse9I	AATT	7 cut(s)	229, 368, 406, 698, 749, 905, 1117
SsiI	CCGC	2 cut(s)	236, 960
SspI	AATATT	1 cut(s)	327
SspMI	CTAG	3 cut(s)	786, 857, 870
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	238, 837
TaaI	ACNGT	5 cut(s)	119, 667, 881, 1036, 1159
TaiI	ACGT	2 cut(s)	604, 662
TaqI	TCGA	3 cut(s)	534, 831, 1115
TasI	AATT	7 cut(s)	229, 368, 406, 698, 749, 905, 1117
TauI	GCSGC	1 cut(s)	962
TfiI	GAWTC	2 cut(s)	794, 833
Tru1I	TTAA	4 cut(s)	27, 662, 1044, 1179
Tru9I	TTAA	4 cut(s)	27, 662, 1044, 1179
TscAI	CASTG	2 cut(s)	122, 352
TseI	GCWGC	5 cut(s)	86, 900, 953, 956, 1197
TspDTI	ATGAA	8 cut(s)	285, 390, 408, 663, 691, 837, 1082, 1119
TspRI	CASTG	2 cut(s)	122, 352
Vha464I	CTTAAG	1 cut(s)	1178
XagI	CCTNNNNNAGG	1 cut(s)	1140
XapI	RAATTY	5 cut(s)	229, 368, 698, 905, 1117
XceI	RCATGY	2 cut(s)	223, 321
XhoI	CTCGAG	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	678
XspI	CTAG	3 cut(s)	786, 857, 870
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.