Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005177

Physical Location & Seq

Genomic Coordinates Forward (+)

8606123 .. 8607749

Gene Structure 1627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011327

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCATCCACAAGCTGCAGCCCTGCCTGCTGATATTGGTCTTCACTGTACCGATGAGGAGCTCTCTATGTTTATGTTTTTACAGAAACTCATAAATGGATCACCACTTCCAACAAACGTGATCAATGGTGTAAATCCTTACCAATACATGCCCTCAAATTTACCACCTGGTAGTCTTTGGTACTTGATTCGCTCTAATGAGAGCAAAGATACAAATCTTGGATACTGGAGGCCCAAAGAGGAGGCATGTAAAATATTCTCAGAAGCTACCATCACTGGTTGGAGAACTACCCTTGAATTCTATGAAGGCCGAGCACCTGATGAACGAAAAACCAATTGGGTAATGCAAGAATACTGGATAACTTACGAGAAAGTTTCCGAAAACAGCAAGATAAAGGAAGCCAGTTTGCTTTGCAGAGTCCAATCTATTGGTGCTGAACCGAAATCAAACTGCAAAAACCCTCAGAAAAAGGTTACTTCTGATGTTGCTAATCACTTCACACAACCAGTTGTTCCACTCGTGGAGAAACATACTGGACACGCTTCCACAAGCAAGCCTCAGGTGATCAAGGATAATGAAACAGGGACGTTAACTGTTACAGAAAGGCTTCCAGATCATCAAATAGAAATCATGTCCGAGACTGAGATAGATTTTCCTTTCGGAGATGACTACATAGAATTGCTAGATCTTGATAGACCAGCATCATTTTCTTCTAGTTCAGATTCAAGTTGCTTGACAATATCATCAGACGAATGCTTCGATTCCCTGGCTTTGTTGGAAGAACTAGAACCCAAAACTAGTCAAGACCATGCAAATAAGATTGCAGGCTGCAAATTCAGTATTTCAGTATCTCAAAAACCAGATGAGTTGGTTATGTATGCAGCTGCCGCTTCCTCAGGATCTTTGAACAAATCTGCAAGTGAAGAAAGGGTCAAAAGTCATTCTTCAATTCCCAGTTCAACAGTGTGCATTAAGAGTAAAGAAAAGACTACAATGAAACTGAGTAGAAATCAAAAACCAGACCAAAGGAATGAAGGTTTCTCGAATTTGCATACGACAACACCTCCAGCAGGAAAGAAGGCTACTGTTGTCAAAACTAAGAAGCTTAAGAAAAAGTATCTATGCTGCTTGCCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

380

Amino Acids

42.22

Weight (kDa)

6.34

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 118	5.7e-16	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005177)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40240 FvH4_2g40240 FvH4_2g40240
malus_domestica	MD15G1032200.v1.1
prunus_persica	Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G383200_v2.0.a1 Prupe.1G390000_v2.0.a1
pyrus_communis	pycom15g02790
rosa_chinensis	RchiOBHm_Chr1g0359401 RchiOBHm_Chr2g0175631 RchiOBHm_Chr4g0388241 RchiOBHm_Chr4g0414451 RchiOBHm_Chr6g0300521 RchiOBHm_Chr7g0195521
rosa_laevigata	RLG00000011327
rosa_multiflora	Rmu_sc0001476.1_g000019 Rmu_sc0001626.1_g000006
rosa_roxburghii	Rroxscaffold_6G00389970 Rroxscaffold_7G00167700
rosa_rugosa	Rorug05G0015600 Rorug06G0296600 Rorug06G0296700.1 Rorug06G0296800
rosa_samantha	Rh6AG409400 Rh6BG416600 Rh6CG424300 Rh6DG409900
rosa_wichuraiana	Rw6G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	888
AclWI	GGATC	2 cut(s)	106, 907
AcsI	RAATTY	4 cut(s)	157, 296, 833, 1045
AfaI	GTAC	2 cut(s)	49, 182
AfiI	CCNNNNNNNGG	1 cut(s)	1070
AflII	CTTAAG	1 cut(s)	1106
AgsI	TTSAA	5 cut(s)	296, 726, 907, 948, 960
AhlI	ACTAGT	1 cut(s)	797
AjnI	CCWGG	2 cut(s)	166, 765
AjuI	GAANNNNNNNTTGG	2 cut(s)	319, 351
AluBI	AGCT	5 cut(s)	14, 61, 266, 884, 1105
AluI	AGCT	5 cut(s)	14, 61, 266, 884, 1105
Alw21I	GWGCWC	2 cut(s)	63, 316
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	2 cut(s)	106, 907
AoxI	GGCC	2 cut(s)	230, 307
ApeKI	GCWGC	6 cut(s)	14, 17, 828, 881, 884, 1125
ApoI	RAATTY	4 cut(s)	157, 296, 833, 1045
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
Asp700I	GAANNNNTTC	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	93, 574
AxyI	CCTNAGG	2 cut(s)	558, 895
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	63, 316
BbvI	GCAGC	5 cut(s)	29, 815, 871, 893, 1112
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	2 cut(s)	168, 767
BciVI	GTATCC	1 cut(s)	215
BclI	TGATCA	2 cut(s)	120, 564
BcoDI	GTCTC	1 cut(s)	632
BcuI	ACTAGT	1 cut(s)	797
BfaI	CTAG	4 cut(s)	683, 714, 785, 798
BfmI	CTRYAG	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	1106
BfuI	GTATCC	1 cut(s)	215
BglII	AGATCT	1 cut(s)	685
BisI	GCNGC	7 cut(s)	15, 18, 829, 882, 885, 888, 1126
BlsI	GCNGC	7 cut(s)	16, 19, 830, 883, 886, 889, 1127
Bme1390I	CCNGG	2 cut(s)	168, 767
BmgT120I	GGNCC	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	168, 767
BmrI	ACTGGG	1 cut(s)	948
BmsI	GCATC	2 cut(s)	13, 710
BmuI	ACTGGG	1 cut(s)	948
BpiI	GAAGAC	1 cut(s)	32
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	2 cut(s)	247, 1050
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	765
BsaXI	ACNNNNNCTCC	2 cut(s)	1048, 1078
Bsc4I	CCNNNNNNNGG	1 cut(s)	1070
Bse1I	ACTGG	7 cut(s)	230, 280, 359, 402, 506, 538, 954
Bse21I	CCTNAGG	2 cut(s)	558, 895
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	168, 767
BseDI	CCNNGG	1 cut(s)	765
BseGI	GGATG	1 cut(s)	4
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	1070
BseMII	CTCAG	6 cut(s)	273, 476, 572, 633, 909, 992
BseNI	ACTGG	7 cut(s)	230, 280, 359, 402, 506, 538, 954
BseRI	GAGGAG	2 cut(s)	71, 254
BseXI	GCAGC	5 cut(s)	29, 815, 871, 893, 1112
BshFI	GGCC	2 cut(s)	232, 309
BsiHKAI	GWGCWC	2 cut(s)	63, 316
BslFI	GGGAC	1 cut(s)	598
BslI	CCNNNNNNNGG	1 cut(s)	1070
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	598
BsmI	GAATGC	1 cut(s)	758
BsnI	GGCC	2 cut(s)	232, 309
Bsp1286I	GDGCHC	2 cut(s)	63, 316
Bsp143I	GATC	6 cut(s)	98, 120, 564, 613, 685, 899
BspACI	CCGC	1 cut(s)	888
BspANI	GGCC	2 cut(s)	232, 309
BspCNI	CTCAG	6 cut(s)	272, 475, 571, 634, 908, 993
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	2 cut(s)	106, 907
BspTI	CTTAAG	1 cut(s)	1106
BsrI	ACTGG	7 cut(s)	230, 280, 359, 402, 506, 538, 954
BssECI	CCNNGG	1 cut(s)	765
BssMI	GATC	6 cut(s)	98, 120, 564, 613, 685, 899
BssSI	CACGAG	1 cut(s)	518
Bst2BI	CACGAG	1 cut(s)	518
Bst2UI	CCWGG	2 cut(s)	168, 767
Bst4CI	ACNGT	4 cut(s)	47, 595, 964, 1087
BstAFI	CTTAAG	1 cut(s)	1106
BstC8I	GCNNGC	4 cut(s)	27, 554, 826, 1130
BstDEI	CTNAG	7 cut(s)	259, 462, 558, 642, 895, 1001, 1098
BstENI	CCTNNNNNAGG	1 cut(s)	1068
BstF5I	GGATG	1 cut(s)	4
BstKTI	GATC	6 cut(s)	101, 123, 567, 616, 688, 902
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	6 cut(s)	98, 120, 564, 613, 685, 899
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 887
BstNI	CCWGG	2 cut(s)	168, 767
BstNSI	RCATGY	2 cut(s)	151, 249
BstSCI	CCNGG	2 cut(s)	166, 765
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	5 cut(s)	29, 815, 871, 893, 1112
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	2 cut(s)	685, 899
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstYI	RGATCY	2 cut(s)	685, 899
Bsu36I	CCTNAGG	2 cut(s)	558, 895
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	232, 309
BtsCI	GGATG	1 cut(s)	4
BtsIMutI	CAGTG	3 cut(s)	43, 273, 969
Cac8I	GCNNGC	4 cut(s)	27, 554, 826, 1130
Cfr13I	GGNCC	1 cut(s)	231
CsiI	ACCWGGT	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	48, 181
CviAII	CATG	5 cut(s)	148, 246, 631, 809, 1134
CviQI	GTAC	2 cut(s)	48, 181
DdeI	CTNAG	7 cut(s)	259, 462, 558, 642, 895, 1001, 1098
DpnI	GATC	6 cut(s)	100, 122, 566, 615, 687, 901
DpnII	GATC	6 cut(s)	98, 120, 564, 613, 685, 899
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	61
Eco81I	CCTNAGG	2 cut(s)	558, 895
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	1068
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	166, 765
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	63
FaeI	CATG	5 cut(s)	151, 249, 634, 812, 1137
FalI	AAGNNNNNCTT	2 cut(s)	928, 960
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	5 cut(s)	147, 245, 630, 808, 1133
FbaI	TGATCA	2 cut(s)	120, 564
Fnu4HI	GCNGC	7 cut(s)	15, 18, 829, 882, 885, 888, 1126
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	7 cut(s)	15, 18, 829, 882, 885, 888, 1126
FspBI	CTAG	4 cut(s)	683, 714, 785, 798
GluI	GCNGC	7 cut(s)	15, 18, 829, 882, 885, 888, 1126
GsuI	CTGGAG	2 cut(s)	247, 1050
HaeIII	GGCC	2 cut(s)	232, 309
Hin1II	CATG	5 cut(s)	151, 249, 634, 812, 1137
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HindIII	AAGCTT	1 cut(s)	1103
HinfI	GANTC	4 cut(s)	187, 417, 722, 761
HpaI	GTTAAC	1 cut(s)	591
HphI	GGTGA	2 cut(s)	93, 574
Hpy166II	GTNNAC	1 cut(s)	591
Hpy188I	TCNGA	8 cut(s)	262, 379, 465, 481, 637, 662, 721, 748
Hpy188III	TCNNGA	5 cut(s)	611, 689, 803, 897, 1042
Hpy8I	GTNNAC	1 cut(s)	591
HpyAV	CCTTC	3 cut(s)	299, 1028, 1072
HpyCH4III	ACNGT	4 cut(s)	47, 595, 964, 1087
HpyCH4IV	ACGT	2 cut(s)	117, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 887
HpyF3I	CTNAG	7 cut(s)	259, 462, 558, 642, 895, 1001, 1098
HpySE526I	ACGT	2 cut(s)	117, 587
Hsp92II	CATG	5 cut(s)	151, 249, 634, 812, 1137
Ksp22I	TGATCA	2 cut(s)	120, 564
KspAI	GTTAAC	1 cut(s)	591
Kzo9I	GATC	6 cut(s)	98, 120, 564, 613, 685, 899
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	5 cut(s)	29, 815, 871, 893, 1112
LweI	GCATC	2 cut(s)	13, 710
MabI	ACCWGGT	1 cut(s)	166
MaeI	CTAG	4 cut(s)	683, 714, 785, 798
MaeII	ACGT	2 cut(s)	117, 587
MaeIII	GTNAC	2 cut(s)	472, 595
MalI	GATC	6 cut(s)	100, 122, 566, 615, 687, 901
MboI	GATC	6 cut(s)	98, 120, 564, 613, 685, 899
MboII	GAAGA	5 cut(s)	32, 702, 791, 935, 936
MfeI	CAATTG	1 cut(s)	334
MflI	RGATCY	2 cut(s)	685, 899
MhlI	GDGCHC	2 cut(s)	63, 316
MluCI	AATT	7 cut(s)	157, 296, 334, 677, 833, 948, 1045
MlyI	GAGTC	1 cut(s)	426
MmeI	TCCRAC	3 cut(s)	134, 260, 756
MnlI	CCTC	9 cut(s)	49, 163, 222, 232, 235, 471, 567, 904, 1074
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	3 cut(s)	590, 972, 1107
MspA1I	CMGCKG	1 cut(s)	884
MspCI	CTTAAG	1 cut(s)	1106
MspR9I	CCNGG	2 cut(s)	168, 767
MunI	CAATTG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	758
MvaI	CCWGG	2 cut(s)	168, 767
MwoI	GCNNNNNNNGC	2 cut(s)	26, 887
NdeII	GATC	6 cut(s)	98, 120, 564, 613, 685, 899
NlaIII	CATG	5 cut(s)	151, 249, 634, 812, 1137
NmeAIII	GCCGAG	1 cut(s)	335
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	151, 249
PcsI	WCGNNNNNNNCGW	1 cut(s)	756
PctI	GAATGC	1 cut(s)	758
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	3 cut(s)	187, 722, 761
PkrI	GCNGC	7 cut(s)	16, 19, 830, 883, 886, 889, 1127
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	166, 765
PspGI	CCWGG	2 cut(s)	166, 765
PspPI	GGNCC	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	2 cut(s)	685, 899
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	2 cut(s)	49, 182
RsaNI	GTAC	2 cut(s)	48, 181
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	590, 972, 1107
SatI	GCNGC	7 cut(s)	15, 18, 829, 882, 885, 888, 1126
Sau3AI	GATC	6 cut(s)	98, 120, 564, 613, 685, 899
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	1 cut(s)	426
ScrFI	CCNGG	2 cut(s)	168, 767
SduI	GDGCHC	2 cut(s)	63, 316
SexAI	ACCWGGT	1 cut(s)	166
SfaNI	GCATC	2 cut(s)	13, 710
SfcI	CTRYAG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	1106
SmoI	CTYRAG	1 cut(s)	1106
SpeI	ACTAGT	1 cut(s)	797
Sse9I	AATT	7 cut(s)	157, 296, 334, 677, 833, 948, 1045
SsiI	CCGC	1 cut(s)	888
SspI	AATATT	1 cut(s)	255
SspMI	CTAG	4 cut(s)	683, 714, 785, 798
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	166, 765
TaaI	ACNGT	4 cut(s)	47, 595, 964, 1087
TaiI	ACGT	2 cut(s)	120, 590
TaqI	TCGA	2 cut(s)	759, 1043
TasI	AATT	7 cut(s)	157, 296, 334, 677, 833, 948, 1045
TauI	GCSGC	1 cut(s)	890
TfiI	GAWTC	3 cut(s)	187, 722, 761
Tru1I	TTAA	3 cut(s)	590, 972, 1107
Tru9I	TTAA	3 cut(s)	590, 972, 1107
TscAI	CASTG	3 cut(s)	50, 280, 969
TseI	GCWGC	6 cut(s)	14, 17, 828, 881, 884, 1125
TspDTI	ATGAA	5 cut(s)	318, 336, 591, 1010, 1047
TspRI	CASTG	3 cut(s)	50, 280, 969
Vha464I	CTTAAG	1 cut(s)	1106
XagI	CCTNNNNNAGG	1 cut(s)	1068
XapI	RAATTY	4 cut(s)	157, 296, 833, 1045
XceI	RCATGY	2 cut(s)	151, 249
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	4 cut(s)	683, 714, 785, 798
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.