Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008660

Physical Location & Seq

Genomic Coordinates Forward (+)

1717892 .. 1720736

Gene Structure 2845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCTCGAGGCAATGGAGAGCTCCGTCAATGGGGGCGGATTCTCGCACTTGCAGAGTTGCGGGGACAGCAGTGAGGAGGAGCTGTCGGTGCTTCCCCGCCACACAAAAGTGGTGGTCACGGGGAATAACCGGACCAAGTCGGTGCTTGTTGGCCTCCAGGGCGTCGTCAAGAAGGCCGTTGGGCTCGGCGGGTGGCATTGGCTGGTTCTCACAAACGGCATAGAAGTGAAGCTTCAGAGGAATGCCCTTAGCGTGATTGAAGCTCCAACTGGTAATGAGGAAGATGACGACCTTGATTTCGAGAATGTGCACTGGAATGGATCAGATATGGCATCCGATGACACTCAAAAGTCCCACAGATCAAGGCACAGGGTGCATAAATCATCTGGATCATCTCACAAGACTATGTGCAGAACTTTCTCTTGTGATTCACAATCCAAGGGTTCTATTTGTACTCCCCGAGGGTCCACGAAAATTGACCTTGGGAAACTGGAGATGGCTGCTTTATGGAGATATTGGCGACACTTCAATCTTGTGGACGCCATCCCTAACCCATCGAAAGAGGAACTAATTGATGTTGTTCAAAGGCATTTCATGTCACAGCCAATCGACGAGTTGCAGGTCATTGTGGGGTTTGTTCAGGCTGCGAGGAAACTAAAGAAGTCTGTTCGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP30_Sin3_bdg

Protein Analysis

226

Amino Acids

24.99

Weight (kDa)

8.34

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19330 AT1G19330 AT1G19330 AT1G75060 AT1G75060 AT1G75060
fragaria_vesca	FvH4_2g40250 FvH4_2g40250
malus_domestica	MD15G1032300.v1.1
prunus_persica	Prupe.1G383300_v2.0.a1
pyrus_communis	pycom15g02800
rosa_chinensis	RchiOBHm_Chr6g0300511
rosa_laevigata	RLG00000011328
rosa_multiflora	Rmu_sc0001476.1_g000018 Rmu_sc0006386.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167710
rosa_rugosa	Rorug06G0296600 Rorug06G0296600
rosa_samantha	Rh6AG409300 Rh6BG416500 Rh6CG424200 Rh6DG409800
rosa_wichuraiana	Rw6G035810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	610
AciI	CCGC	4 cut(s)	36, 60, 97, 189
AclWI	GGATC	2 cut(s)	328, 397
AcuI	CTGAAG	1 cut(s)	218
AcyI	GRCGYC	2 cut(s)	162, 540
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	260, 529, 584
AjnI	CCWGG	1 cut(s)	156
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	4 cut(s)	21, 82, 232, 263
AluI	AGCT	4 cut(s)	21, 82, 232, 263
Alw21I	GWGCWC	2 cut(s)	23, 312
Alw44I	GTGCAC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	328, 397
Ama87I	CYCGRG	2 cut(s)	5, 459
AoxI	GGCC	2 cut(s)	151, 174
ApaLI	GTGCAC	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	500, 644
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspS9I	GGNCC	2 cut(s)	132, 465
AvaI	CYCGRG	2 cut(s)	5, 459
AvaII	GGWCC	2 cut(s)	132, 465
BaeGI	GKGCMC	1 cut(s)	312
BanII	GRGCYC	2 cut(s)	23, 186
Bbv12I	GWGCWC	2 cut(s)	23, 312
BbvI	GCAGC	2 cut(s)	487, 631
BccI	CCATC	3 cut(s)	490, 551, 562
BceAI	ACGGC	2 cut(s)	161, 232
BciT130I	CCWGG	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	610
BglI	GCCNNNNNGGC	1 cut(s)	159
BisI	GCNGC	2 cut(s)	501, 645
BlsI	GCNGC	2 cut(s)	502, 646
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	2 cut(s)	132, 465
BmeT110I	CYCGRG	2 cut(s)	5, 459
BmgT120I	GGNCC	2 cut(s)	132, 465
BmiI	GGNNCC	1 cut(s)	466
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	341
BpmI	CTGGAG	2 cut(s)	140, 512
Bpu10I	CCTNAGC	1 cut(s)	248
BsaHI	GRCGYC	2 cut(s)	162, 540
BsaJI	CCNNGG	4 cut(s)	157, 438, 460, 481
BsaWI	WCCGGW	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse1I	ACTGG	3 cut(s)	274, 317, 495
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	4 cut(s)	157, 438, 460, 481
BseGI	GGATG	2 cut(s)	332, 543
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	18
BseNI	ACTGG	3 cut(s)	274, 317, 495
BseRI	GAGGAG	2 cut(s)	89, 92
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	487, 631
BsgI	GTGCAG	1 cut(s)	430
BshFI	GGCC	2 cut(s)	153, 176
BsiHKAI	GWGCWC	2 cut(s)	23, 312
BsiHKCI	CYCGRG	2 cut(s)	5, 459
BsiSI	CCGG	1 cut(s)	130
BslFI	GGGAC	2 cut(s)	77, 337
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmFI	GGGAC	2 cut(s)	77, 337
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	153, 176
BsoBI	CYCGRG	2 cut(s)	5, 459
Bsp1286I	GDGCHC	3 cut(s)	23, 186, 312
Bsp143I	GATC	3 cut(s)	320, 359, 389
BspACI	CCGC	4 cut(s)	36, 60, 97, 189
BspANI	GGCC	2 cut(s)	153, 176
BspLI	GGNNCC	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	2 cut(s)	328, 397
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	3 cut(s)	274, 317, 495
BssECI	CCNNGG	4 cut(s)	157, 438, 460, 481
BssMI	GATC	3 cut(s)	320, 359, 389
BssNI	GRCGYC	2 cut(s)	162, 540
BssT1I	CCWWGG	2 cut(s)	438, 481
Bst2UI	CCWGG	1 cut(s)	158
BstACI	GRCGYC	2 cut(s)	162, 540
BstAPI	GCANNNNNTGC	1 cut(s)	373
BstDEI	CTNAG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	332, 543
BstKTI	GATC	3 cut(s)	323, 362, 392
BstMBI	GATC	3 cut(s)	320, 359, 389
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 88, 159, 373
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	487, 631
BsuRI	GGCC	2 cut(s)	153, 176
BtsCI	GGATG	2 cut(s)	332, 543
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 310
BveI	ACCTGC	1 cut(s)	610
Cfr13I	GGNCC	2 cut(s)	132, 465
CseI	GACGC	2 cut(s)	151, 548
Csp6I	GTAC	1 cut(s)	453
CspCI	CAANNNNNGTGG	4 cut(s)	93, 128, 457, 492
CviAII	CATG	1 cut(s)	595
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	3 cut(s)	322, 361, 391
DpnII	GATC	3 cut(s)	320, 359, 389
DraIII	CACNNNGTG	1 cut(s)	373
EciI	GGCGGA	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	438, 481
Eco24I	GRGCYC	2 cut(s)	23, 186
Eco47I	GGWCC	2 cut(s)	132, 465
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	218
Eco88I	CYCGRG	2 cut(s)	5, 459
EcoICRI	GAGCTC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	2 cut(s)	438, 481
EcoT38I	GRGCYC	2 cut(s)	23, 186
ErhI	CCWWGG	2 cut(s)	438, 481
FaeI	CATG	1 cut(s)	598
FaiI	YATR	6 cut(s)	221, 329, 378, 407, 508, 596
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	2 cut(s)	77, 337
FatI	CATG	1 cut(s)	594
FauI	CCCGC	3 cut(s)	53, 104, 182
Fnu4HI	GCNGC	2 cut(s)	501, 645
FokI	GGATG	2 cut(s)	319, 530
FriOI	GRGCYC	2 cut(s)	23, 186
Fsp4HI	GCNGC	2 cut(s)	501, 645
GluI	GCNGC	2 cut(s)	501, 645
GsuI	CTGGAG	2 cut(s)	140, 512
HaeIII	GGCC	2 cut(s)	153, 176
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	2 cut(s)	151, 548
Hin1I	GRCGYC	2 cut(s)	162, 540
Hin1II	CATG	1 cut(s)	598
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	39, 428
HpaII	CCGG	1 cut(s)	130
Hpy166II	GTNNAC	3 cut(s)	310, 468, 538
Hpy188I	TCNGA	3 cut(s)	237, 325, 337
Hpy188III	TCNNGA	3 cut(s)	169, 301, 387
Hpy8I	GTNNAC	3 cut(s)	310, 468, 538
Hpy99I	CGWCG	2 cut(s)	167, 614
HpyAV	CCTTC	1 cut(s)	166
HpyCH4V	TGCA	5 cut(s)	52, 310, 376, 411, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 88, 159, 373
HpyF3I	CTNAG	1 cut(s)	248
Hsp92I	GRCGYC	2 cut(s)	162, 540
Hsp92II	CATG	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	320, 359, 389
LmnI	GCTCC	3 cut(s)	26, 79, 268
Lsp1109I	GCAGC	2 cut(s)	487, 631
LweI	GCATC	1 cut(s)	341
MaeIII	GTNAC	2 cut(s)	115, 597
MalI	GATC	3 cut(s)	322, 361, 391
MboI	GATC	3 cut(s)	320, 359, 389
MboII	GAAGA	1 cut(s)	293
MhlI	GDGCHC	3 cut(s)	23, 186, 312
MluCI	AATT	2 cut(s)	474, 570
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	8 cut(s)	67, 70, 164, 231, 271, 455, 556, 642
MslI	CAYNNNNRTG	3 cut(s)	107, 224, 315
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	4 cut(s)	66, 88, 159, 373
NdeII	GATC	3 cut(s)	320, 359, 389
NlaIII	CATG	1 cut(s)	598
NlaIV	GGNNCC	1 cut(s)	466
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	115, 597
OliI	CACNNNNGTG	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	5
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	39, 428
PflFI	GACNNNGTC	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	502, 646
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	2 cut(s)	132, 465
PspXI	VCTCGAGB	1 cut(s)	5
PsyI	GACNNNGTC	1 cut(s)	136
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
RseI	CAYNNNNRTG	3 cut(s)	107, 224, 315
SacI	GAGCTC	1 cut(s)	23
SatI	GCNGC	2 cut(s)	501, 645
Sau3AI	GATC	3 cut(s)	320, 359, 389
Sau96I	GGNCC	2 cut(s)	132, 465
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	3 cut(s)	23, 186, 312
SetI	ASST	7 cut(s)	23, 84, 234, 265, 294, 483, 624
SfaNI	GCATC	1 cut(s)	341
Sfr274I	CTCGAG	1 cut(s)	5
SinI	GGWCC	2 cut(s)	132, 465
SlaI	CTCGAG	1 cut(s)	5
SmiMI	CAYNNNNRTG	3 cut(s)	107, 224, 315
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	2 cut(s)	474, 570
SsiI	CCGC	4 cut(s)	36, 60, 97, 189
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	2 cut(s)	438, 481
TaqI	TCGA	4 cut(s)	6, 300, 557, 609
TasI	AATT	2 cut(s)	474, 570
TatI	WGTACW	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	39, 428
TscAI	CASTG	2 cut(s)	76, 317
TseFI	GTSAC	2 cut(s)	115, 597
TseI	GCWGC	2 cut(s)	500, 644
Tsp45I	GTSAC	2 cut(s)	115, 597
TspDTI	ATGAA	1 cut(s)	583
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	2 cut(s)	76, 317
Tth111I	GACNNNGTC	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	132, 465
XhoI	CTCGAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.