Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008660

Physical Location & Seq

Genomic Coordinates Forward (+)

34430759 .. 34434633

Gene Structure 3875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G383300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCTTGAGGCAATGGAGAGTTCCGTCCATGGCGGTTTCTCTCACTTGCAGAGTTGTGGTGACAGTAGTGAAGAGGAGCTCTCTGTGCTTCCTCGCCACACCAAGGTGGTGGTGACTGGGAATAACAGGACCAAGTCTGTCCTTGTTGGTCTCCAGGGCGTGGTCAAGAAGGCTGTGGGGCTTGGCGGGTGGCATTGGCTGGTTCTTACAAATGGCATAGAAGTTAAGCTTCAGAGGAATGCCCTTAGTGTGATTGAAGCTCCTACTGGTAATGAGGAAGATGATGACCTTGATTTTGAGAATGTCCAGTGGAATGGATCAGATATGGCGTCTGATGACACTCAAAAGTCCCACAGATCAAGGCAAAGAGTGCATAAATCATCTGGATCATCTCACAAGACTATGTGTAGAACTTTCTCTTGTGACTCTCAGTCTAAGGGTTCTATTTCTACTCCACGAGGGTCCACGAAAATTGACCTTGGCAAACTGGAGATGGCTGCTTTATGGAGATATTGGCGACACTTCAATCTTGTGGATGCCATTCCCAACCCATCGAAAGAGGAACTAATAGATGTTGTGCAGAGGCATTTCATGTCACAGCCAATCGATGAGTTGCAGGTCATTGTGGGGTTTGTTCAGGCTGCGAAGAGACTAAAGACCGTCTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP30_Sin3_bdg

Protein Analysis

224

Amino Acids

24.75

Weight (kDa)

7.12

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19330 AT1G19330 AT1G19330 AT1G75060 AT1G75060 AT1G75060
fragaria_vesca	FvH4_2g40250 FvH4_2g40250
malus_domestica	MD15G1032300.v1.1
prunus_persica	Prupe.1G383300_v2.0.a1
pyrus_communis	pycom15g02800
rosa_chinensis	RchiOBHm_Chr6g0300511
rosa_laevigata	RLG00000011328
rosa_multiflora	Rmu_sc0001476.1_g000018 Rmu_sc0006386.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167710
rosa_rugosa	Rorug06G0296600 Rorug06G0296600
rosa_samantha	Rh6AG409300 Rh6BG416500 Rh6CG424200 Rh6DG409800
rosa_wichuraiana	Rw6G035810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	607
AccB7I	CCANNNNNTGG	1 cut(s)	160
AciI	CCGC	2 cut(s)	33, 186
AclWI	GGATC	2 cut(s)	325, 394
AcuI	CTGAAG	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	103, 160
AgsI	TTSAA	2 cut(s)	257, 526
AhdI	GACNNNNNGTC	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	153
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	3 cut(s)	79, 229, 260
AluI	AGCT	3 cut(s)	79, 229, 260
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	155, 643
AlwI	GGATC	2 cut(s)	325, 394
ApeKI	GCWGC	2 cut(s)	497, 641
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AspS9I	GGNCC	2 cut(s)	129, 462
AsuHPI	GGTGA	2 cut(s)	71, 124
AvaII	GGWCC	2 cut(s)	129, 462
BanII	GRGCYC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	484, 628
BccI	CCATC	2 cut(s)	487, 559
BciT130I	CCWGG	1 cut(s)	155
BcoDI	GTCTC	2 cut(s)	155, 643
BfuAI	ACCTGC	1 cut(s)	607
BisI	GCNGC	2 cut(s)	498, 642
BlsI	GCNGC	2 cut(s)	499, 643
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	2 cut(s)	129, 462
BmeRI	GACNNNNNGTC	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	129, 462
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	526
BmuI	ACTGGG	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	2 cut(s)	137, 509
BpuEI	CTTGAG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	4 cut(s)	28, 102, 154, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 160
Bse1I	ACTGG	4 cut(s)	121, 271, 307, 492
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	155
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	4 cut(s)	28, 102, 154, 478
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	2 cut(s)	103, 160
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	4 cut(s)	121, 271, 307, 492
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	484, 628
BsgI	GTGCAG	1 cut(s)	599
BshVI	ATCGAT	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	103, 160
BsmAI	GTCTC	2 cut(s)	155, 643
BsmFI	GGGAC	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	244
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	317, 356, 386
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	2 cut(s)	33, 186
BspCNI	CTCAG	1 cut(s)	442
BspDI	ATCGAT	1 cut(s)	606
BspLI	GGNNCC	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	2 cut(s)	325, 394
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	4 cut(s)	121, 271, 307, 492
BssECI	CCNNGG	4 cut(s)	28, 102, 154, 478
BssMI	GATC	3 cut(s)	317, 356, 386
BssNI	GRCGYC	1 cut(s)	329
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	3 cut(s)	28, 102, 478
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	2 cut(s)	65, 661
Bst6I	CTCTTC	2 cut(s)	66, 641
BstACI	GRCGYC	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstDEI	CTNAG	3 cut(s)	245, 429, 435
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	541
BstKTI	GATC	3 cut(s)	320, 359, 389
BstMAI	GTCTC	2 cut(s)	155, 643
BstMBI	GATC	3 cut(s)	317, 356, 386
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 370
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	484, 628
BstXI	CCANNNNNNTGG	2 cut(s)	109, 314
Bsu15I	ATCGAT	1 cut(s)	606
BsuTUI	ATCGAT	1 cut(s)	606
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	607
Cfr13I	GGNCC	2 cut(s)	129, 462
ClaI	ATCGAT	1 cut(s)	606
CseI	GACGC	1 cut(s)	318
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	2 cut(s)	29, 592
CviJI	RGCY	9 cut(s)	79, 173, 181, 199, 229, 260, 497, 601, 641
CviKI_1	RGCY	9 cut(s)	79, 173, 181, 199, 229, 260, 497, 601, 641
DdeI	CTNAG	3 cut(s)	245, 429, 435
DpnI	GATC	3 cut(s)	319, 358, 388
DpnII	GATC	3 cut(s)	317, 356, 386
DriI	GACNNNNNGTC	1 cut(s)	430
Eam1104I	CTCTTC	2 cut(s)	66, 641
Eam1105I	GACNNNNNGTC	1 cut(s)	430
EarI	CTCTTC	2 cut(s)	66, 641
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	3 cut(s)	28, 102, 478
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	129, 462
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	3 cut(s)	28, 102, 478
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	3 cut(s)	28, 102, 478
FaeI	CATG	2 cut(s)	32, 595
FaiI	YATR	7 cut(s)	30, 218, 326, 375, 404, 505, 593
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	2 cut(s)	28, 591
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	498, 642
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	498, 642
GluI	GCNGC	2 cut(s)	498, 642
GsuI	CTGGAG	2 cut(s)	137, 509
HgaI	GACGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	329
Hin1II	CATG	2 cut(s)	32, 595
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	425
HphI	GGTGA	2 cut(s)	71, 124
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	3 cut(s)	234, 322, 334
Hpy188III	TCNNGA	2 cut(s)	166, 384
Hpy8I	GTNNAC	1 cut(s)	465
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	2 cut(s)	65, 661
HpyCH4V	TGCA	5 cut(s)	49, 373, 580, 616, 666
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 370
HpyF3I	CTNAG	3 cut(s)	245, 429, 435
Hsp92I	GRCGYC	1 cut(s)	329
Hsp92II	CATG	2 cut(s)	32, 595
Kzo9I	GATC	3 cut(s)	317, 356, 386
LmnI	GCTCC	2 cut(s)	76, 265
Lsp1109I	GCAGC	2 cut(s)	484, 628
LweI	GCATC	1 cut(s)	526
MaeIII	GTNAC	4 cut(s)	59, 112, 422, 594
MalI	GATC	3 cut(s)	319, 358, 388
MboI	GATC	3 cut(s)	317, 356, 386
MboII	GAAGA	3 cut(s)	83, 290, 658
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	7 cut(s)	67, 102, 228, 268, 452, 553, 576
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	85, 370
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	3 cut(s)	317, 356, 386
NlaIII	CATG	2 cut(s)	32, 595
NlaIV	GGNNCC	1 cut(s)	463
NmuCI	GTSAC	4 cut(s)	59, 112, 422, 594
OliI	CACNNNNGTG	1 cut(s)	104
PctI	GAATGC	1 cut(s)	244
PflFI	GACNNNGTC	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	499, 643
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	2 cut(s)	129, 462
PsyI	GACNNNGTC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	2 cut(s)	498, 642
Sau3AI	GATC	3 cut(s)	317, 356, 386
Sau96I	GGNCC	2 cut(s)	129, 462
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	7 cut(s)	81, 108, 231, 262, 291, 480, 621
SfaNI	GCATC	1 cut(s)	526
SinI	GGWCC	2 cut(s)	129, 462
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	1 cut(s)	471
SsiI	CCGC	2 cut(s)	33, 186
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	3 cut(s)	28, 102, 478
TaaI	ACNGT	2 cut(s)	65, 661
TaqI	TCGA	2 cut(s)	554, 606
TasI	AATT	1 cut(s)	471
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	314
TseFI	GTSAC	4 cut(s)	59, 112, 422, 594
TseI	GCWGC	2 cut(s)	497, 641
Tsp45I	GTSAC	4 cut(s)	59, 112, 422, 594
TspDTI	ATGAA	1 cut(s)	580
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	314
Tth111I	GACNNNGTC	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	2 cut(s)	129, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.