Rroxscaffold_7G00167710

Sin3 binding region of histone deacetylase complex subunit SAP30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008660
Physical Location & Seq
Forward (+)
8754928 .. 8758283
3356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00167710.1

Sequence Viewer

Length: 681 bp
ATGCTTCAGGCAATGGAGAGCTCCGTCAACAATGGCGGTTTCTCGCAGTTTCAGAGCTGCGGTGACAGCAGCGAAGAGGAGCTCTCGGTGCTGCCACGTCACACCAAGGTGGTGGTTACCGGCAATAACAGAACCAAGTCCGTTCTCGTTGGTCTCCAAGGCGTCGTAAAGAAGGCCGTAGGGTTAGGCGGATGGCATTGGCTGGTCCTTACAAATGGCATAGAAGTGAAGCTTCAGAGGAATGCCCTTAGTGTAATTGAAGCTCCTACTGGTAATGAGGAAGATGATGACCTTGATTTTGAGACTGTCCAGTGGAACGGATCAGACATGGCATCCGATGATACCCAAAAATCTCAAAGATCAAGGCATAGAGTGCATAAATCATGTGGATCATCTCACAAGACTGCATGCAGATCTTTCTCTTGTGACTCACAATCTAAGGGCTCTGTTTCTACTCCTCGAGGGTCAGGATCAACAAAAATTGACCTTGGGAAACTGGAGATGGCTGCTCTATGGAGATATTGGCGACATTTCAATCTTGTTGATGACATACCAAACCCATCGAAAGAGCAATTGATAGATGTTGTTCAGAGGCATTTCATGTCACAGCAAATCGACGAGTTGCAGGTGATTGTGGGATTTGTTAAAGCTGCAAAGAGAATGAAGAATGTGTGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAP30_Sin3_bdg

Protein Analysis

226

Amino Acids

25.03

Weight (kDa)

8.27

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP30_Sin3_bdg PF13867 166 - 219 3.7e-20 Sin3 binding region of histone deacetylase complex subunit SAP30
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 616
AbsI CCTCGAGG 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 616
AciI CCGC 3 cut(s) 36, 60, 189
AclWI GGATC 3 cut(s) 328, 397, 478
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 162
AgsI TTSAA 2 cut(s) 260, 535
AjiI CACGTC 1 cut(s) 98
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 6 cut(s) 21, 57, 82, 232, 263, 650
AluI AGCT 6 cut(s) 21, 57, 82, 232, 263, 650
Alw21I GWGCWC 2 cut(s) 23, 84
Alw26I GTCTC 2 cut(s) 158, 296
AlwI GGATC 3 cut(s) 328, 397, 478
Ama87I CYCGRG 1 cut(s) 459
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 5 cut(s) 57, 69, 91, 506, 650
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 74, 640
AvaI CYCGRG 1 cut(s) 459
AvaII GGWCC 1 cut(s) 205
BanII GRGCYC 3 cut(s) 23, 84, 446
Bbv12I GWGCWC 2 cut(s) 23, 84
BbvI GCAGC 5 cut(s) 44, 78, 81, 493, 637
BccI CCATC 3 cut(s) 186, 496, 568
BceAI ACGGC 1 cut(s) 161
BcoDI GTCTC 2 cut(s) 158, 296
BfuAI ACCTGC 1 cut(s) 616
BglII AGATCT 1 cut(s) 413
BisI GCNGC 5 cut(s) 58, 70, 92, 507, 651
BlsI GCNGC 5 cut(s) 59, 71, 93, 508, 652
Bme18I GGWCC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 459
BmgBI CACGTC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 205
BmsI GCATC 1 cut(s) 341
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpmI CTGGAG 1 cut(s) 518
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 3 cut(s) 105, 157, 487
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 3 cut(s) 274, 310, 501
Bse3DI GCAATG 1 cut(s) 18
BseDI CCNNGG 3 cut(s) 105, 157, 487
BseGI GGATG 2 cut(s) 197, 332
BseMI GCAATG 1 cut(s) 18
BseNI ACTGG 3 cut(s) 274, 310, 501
BseRI GAGGAG 2 cut(s) 92, 447
BseXI GCAGC 5 cut(s) 44, 78, 81, 493, 637
BshFI GGCC 1 cut(s) 176
BsiHKAI GWGCWC 2 cut(s) 23, 84
BsiHKCI CYCGRG 1 cut(s) 459
BsiSI CCGG 1 cut(s) 120
BsmAI GTCTC 2 cut(s) 158, 296
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 1 cut(s) 176
Bso31I GGTCTC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 459
Bsp1286I GDGCHC 3 cut(s) 23, 84, 446
Bsp143I GATC 5 cut(s) 320, 359, 389, 413, 470
BspACI CCGC 3 cut(s) 36, 60, 189
BspANI GGCC 1 cut(s) 176
BspMI ACCTGC 1 cut(s) 616
BspPI GGATC 3 cut(s) 328, 397, 478
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 3 cut(s) 274, 310, 501
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 3 cut(s) 105, 157, 487
BssMI GATC 5 cut(s) 320, 359, 389, 413, 470
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 3 cut(s) 105, 157, 487
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 2 cut(s) 248, 438
BstEII GGTNACC 1 cut(s) 115
BstF5I GGATG 2 cut(s) 197, 332
BstKTI GATC 5 cut(s) 323, 362, 392, 416, 473
BstMAI GTCTC 2 cut(s) 158, 296
BstMBI GATC 5 cut(s) 320, 359, 389, 413, 470
BstMWI GCNNNNNNNGC 3 cut(s) 66, 88, 373
BstNSI RCATGY 1 cut(s) 411
BstPI GGTNACC 1 cut(s) 115
BstV1I GCAGC 5 cut(s) 44, 78, 81, 493, 637
BstX2I RGATCY 1 cut(s) 413
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 1 cut(s) 413
BsuRI GGCC 1 cut(s) 176
BtrI CACGTC 1 cut(s) 98
BtsCI GGATG 2 cut(s) 197, 332
BtsIMutI CAGTG 1 cut(s) 317
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 151
CviAII CATG 4 cut(s) 328, 384, 408, 601
DdeI CTNAG 2 cut(s) 248, 438
DpnI GATC 5 cut(s) 322, 361, 391, 415, 472
DpnII GATC 5 cut(s) 320, 359, 389, 413, 470
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 204
Ecl136II GAGCTC 2 cut(s) 21, 82
Eco130I CCWWGG 3 cut(s) 105, 157, 487
Eco24I GRGCYC 3 cut(s) 23, 84, 446
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 205
Eco53kI GAGCTC 2 cut(s) 21, 82
Eco57I CTGAAG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 459
Eco91I GGTNACC 1 cut(s) 115
EcoICRI GAGCTC 2 cut(s) 21, 82
EcoO65I GGTNACC 1 cut(s) 115
EcoT14I CCWWGG 3 cut(s) 105, 157, 487
EcoT38I GRGCYC 3 cut(s) 23, 84, 446
ErhI CCWWGG 3 cut(s) 105, 157, 487
FaeI CATG 4 cut(s) 331, 387, 411, 604
FaiI YATR 9 cut(s) 221, 329, 369, 378, 385, 409, 514, 551, 602
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 4 cut(s) 327, 383, 407, 600
Fnu4HI GCNGC 5 cut(s) 58, 70, 92, 507, 651
FokI GGATG 2 cut(s) 204, 319
FriOI GRGCYC 3 cut(s) 23, 84, 446
Fsp4HI GCNGC 5 cut(s) 58, 70, 92, 507, 651
GluI GCNGC 5 cut(s) 58, 70, 92, 507, 651
GsuI CTGGAG 1 cut(s) 518
HaeIII GGCC 1 cut(s) 176
HapII CCGG 1 cut(s) 120
HgaI GACGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 4 cut(s) 331, 387, 411, 604
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 1 cut(s) 428
HpaII CCGG 1 cut(s) 120
HphI GGTGA 2 cut(s) 74, 640
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 5 cut(s) 54, 237, 325, 337, 591
Hpy188III TCNNGA 1 cut(s) 468
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 2 cut(s) 167, 620
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 6 cut(s) 376, 407, 411, 625, 653, 675
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 88, 373
HpyF3I CTNAG 2 cut(s) 248, 438
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 4 cut(s) 331, 387, 411, 604
Kzo9I GATC 5 cut(s) 320, 359, 389, 413, 470
LmnI GCTCC 3 cut(s) 26, 79, 268
LpnPI CCDG 7 cut(s) 133, 188, 255, 323, 453, 482, 611
Lsp1109I GCAGC 5 cut(s) 44, 78, 81, 493, 637
LweI GCATC 1 cut(s) 341
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 5 cut(s) 62, 98, 115, 425, 603
MalI GATC 5 cut(s) 322, 361, 391, 415, 472
MboI GATC 5 cut(s) 320, 359, 389, 413, 470
MboII GAAGA 3 cut(s) 86, 293, 676
MfeI CAATTG 1 cut(s) 572
MflI RGATCY 1 cut(s) 413
MhlI GDGCHC 3 cut(s) 23, 84, 446
MluCI AATT 3 cut(s) 255, 480, 572
MlyI GAGTC 1 cut(s) 422
MnlI CCTC 6 cut(s) 70, 231, 271, 455, 468, 585
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 2 cut(s) 107, 224
MspI CCGG 1 cut(s) 120
MunI CAATTG 1 cut(s) 572
Mva1269I GAATGC 1 cut(s) 247
MwoI GCNNNNNNNGC 3 cut(s) 66, 88, 373
NdeII GATC 5 cut(s) 320, 359, 389, 413, 470
NlaIII CATG 4 cut(s) 331, 387, 411, 604
NmuCI GTSAC 4 cut(s) 62, 98, 425, 603
NspI RCATGY 1 cut(s) 411
OliI CACNNNNGTG 1 cut(s) 107
PaeI GCATGC 1 cut(s) 411
PaeR7I CTCGAG 1 cut(s) 459
PaqCI CACCTGC 1 cut(s) 616
PctI GAATGC 1 cut(s) 247
PkrI GCNGC 5 cut(s) 59, 71, 93, 508, 652
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
Psp124BI GAGCTC 2 cut(s) 23, 84
PspEI GGTNACC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 205
PspXI VCTCGAGB 1 cut(s) 459
PsuI RGATCY 1 cut(s) 413
RseI CAYNNNNRTG 2 cut(s) 107, 224
SacI GAGCTC 2 cut(s) 23, 84
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 5 cut(s) 58, 70, 92, 507, 651
Sau3AI GATC 5 cut(s) 320, 359, 389, 413, 470
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 422
SduI GDGCHC 3 cut(s) 23, 84, 446
SfaNI GCATC 1 cut(s) 341
Sfr274I CTCGAG 1 cut(s) 459
SinI GGWCC 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 459
SmiMI CAYNNNNRTG 2 cut(s) 107, 224
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
SphI GCATGC 1 cut(s) 411
Sse9I AATT 3 cut(s) 255, 480, 572
SsiI CCGC 3 cut(s) 36, 60, 189
SstI GAGCTC 2 cut(s) 23, 84
StyI CCWWGG 3 cut(s) 105, 157, 487
TaaI ACNGT 1 cut(s) 307
TaiI ACGT 1 cut(s) 100
TaqI TCGA 3 cut(s) 460, 563, 615
TasI AATT 3 cut(s) 255, 480, 572
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 1 cut(s) 317
TseFI GTSAC 4 cut(s) 62, 98, 425, 603
TseI GCWGC 5 cut(s) 57, 69, 91, 506, 650
Tsp45I GTSAC 4 cut(s) 62, 98, 425, 603
TspDTI ATGAA 2 cut(s) 589, 677
TspGWI ACGGA 3 cut(s) 13, 130, 333
TspRI CASTG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 205
XceI RCATGY 1 cut(s) 411
XhoI CTCGAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.