Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008660

Physical Location & Seq

Genomic Coordinates Reverse (-)

64163867 .. 64167306

Gene Structure 3440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG416500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCTTCAGGCAATGGAGAGCTCCGTCAACAATGGCGGTTTCTCGCAGTTTCAGAGCTGCGGTGACAGCAGCGAAGAGGAGCTCTCGGTGCTGCCACGTCACACCAAGGTGGTGGTTACCGGCAATAACAGAACCAAGTCCGTTCTCGTTGGTCTCCAAGGCGTCGTAAAGAAGGCCGTAGGGTTAGGCGGATGGCATTGGCTGGTCCTTACAAATGGCATAGAAGTAAAGCTTCAGAGGAATGCCCTTAGTGTAATTGAAGCTCCTACTGGTAATGAGGATGATGATGACCTTGATTTTGAGACTGTCCAGTGGAATGGATCAGACATGGCATCCGATGATACCCAAAAATCTCAAAGATCAAGGCATAGAGTGCATAAATCATGTGGATCATCTCACAAGACTACATGCAGATCTTTCTCTTGTGACTCACAATCTAAGGGCTCTGTTTCTACTCCTCGAGGGTCAGGATCAACAGTGAGTAGCATCCCTGTGCTCTTTTTGACTTTATACTATACTCTTCCATATTTGAGGAGATGGCAAGGGTCTAGGTTGATTATAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP30_Sin3_bdg

Protein Analysis

188

Amino Acids

20.59

Weight (kDa)

8.38

Isoelectric Point (pI)

62.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19330 AT1G19330 AT1G19330 AT1G75060 AT1G75060 AT1G75060
fragaria_vesca	FvH4_2g40250 FvH4_2g40250
malus_domestica	MD15G1032300.v1.1
prunus_persica	Prupe.1G383300_v2.0.a1
pyrus_communis	pycom15g02800
rosa_chinensis	RchiOBHm_Chr6g0300511
rosa_laevigata	RLG00000011328
rosa_multiflora	Rmu_sc0001476.1_g000018 Rmu_sc0006386.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167710
rosa_rugosa	Rorug06G0296600 Rorug06G0296600
rosa_samantha	Rh6AG409300 Rh6BG416500 Rh6CG424200 Rh6DG409800
rosa_wichuraiana	Rw6G035810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	560
AbsI	CCTCGAGG	1 cut(s)	459
AciI	CCGC	3 cut(s)	36, 60, 189
AclWI	GGATC	3 cut(s)	328, 397, 478
AcuI	CTGAAG	1 cut(s)	218
AcyI	GRCGYC	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	260
AjiI	CACGTC	1 cut(s)	98
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	5 cut(s)	21, 57, 82, 232, 263
AluI	AGCT	5 cut(s)	21, 57, 82, 232, 263
Alw21I	GWGCWC	3 cut(s)	23, 84, 498
Alw26I	GTCTC	2 cut(s)	158, 296
AlwI	GGATC	3 cut(s)	328, 397, 478
Ama87I	CYCGRG	1 cut(s)	459
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	3 cut(s)	57, 69, 91
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	459
AvaII	GGWCC	1 cut(s)	205
BanII	GRGCYC	3 cut(s)	23, 84, 446
Bbv12I	GWGCWC	3 cut(s)	23, 84, 498
BbvI	GCAGC	3 cut(s)	44, 78, 81
BccI	CCATC	2 cut(s)	186, 531
BceAI	ACGGC	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	158, 296
BfaI	CTAG	1 cut(s)	549
BglII	AGATCT	1 cut(s)	413
BisI	GCNGC	3 cut(s)	58, 70, 92
BlsI	GCNGC	3 cut(s)	59, 71, 93
Bme18I	GGWCC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	459
BmgBI	CACGTC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	205
BmsI	GCATC	2 cut(s)	341, 495
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	105, 157
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	274, 310
Bse3DI	GCAATG	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	105, 157
BseGI	GGATG	4 cut(s)	197, 286, 332, 486
BseMI	GCAATG	1 cut(s)	18
BseNI	ACTGG	2 cut(s)	274, 310
BseRI	GAGGAG	3 cut(s)	92, 447, 547
BseXI	GCAGC	3 cut(s)	44, 78, 81
BshFI	GGCC	1 cut(s)	176
BsiHKAI	GWGCWC	3 cut(s)	23, 84, 498
BsiHKCI	CYCGRG	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	120
BsmAI	GTCTC	2 cut(s)	158, 296
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	459
Bsp1286I	GDGCHC	4 cut(s)	23, 84, 446, 498
Bsp143I	GATC	5 cut(s)	320, 359, 389, 413, 470
BspACI	CCGC	3 cut(s)	36, 60, 189
BspANI	GGCC	1 cut(s)	176
BspPI	GGATC	3 cut(s)	328, 397, 478
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	274, 310
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	105, 157
BssMI	GATC	5 cut(s)	320, 359, 389, 413, 470
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	2 cut(s)	105, 157
Bst4CI	ACNGT	2 cut(s)	307, 478
Bst6I	CTCTTC	2 cut(s)	69, 525
BstACI	GRCGYC	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	248, 438
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	4 cut(s)	197, 286, 332, 486
BstKTI	GATC	5 cut(s)	323, 362, 392, 416, 473
BstMAI	GTCTC	2 cut(s)	158, 296
BstMBI	GATC	5 cut(s)	320, 359, 389, 413, 470
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 88, 373
BstNSI	RCATGY	1 cut(s)	411
BstPI	GGTNACC	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	44, 78, 81
BstX2I	RGATCY	1 cut(s)	413
BstXI	CCANNNNNNTGG	2 cut(s)	112, 317
BstYI	RGATCY	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	176
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	4 cut(s)	197, 286, 332, 486
BtsIMutI	CAGTG	2 cut(s)	317, 483
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	1 cut(s)	151
CviAII	CATG	3 cut(s)	328, 384, 408
CviJI	RGCY	8 cut(s)	21, 57, 82, 176, 202, 232, 263, 444
CviKI_1	RGCY	8 cut(s)	21, 57, 82, 176, 202, 232, 263, 444
DdeI	CTNAG	2 cut(s)	248, 438
DpnI	GATC	5 cut(s)	322, 361, 391, 415, 472
DpnII	GATC	5 cut(s)	320, 359, 389, 413, 470
Eam1104I	CTCTTC	2 cut(s)	69, 525
EarI	CTCTTC	2 cut(s)	69, 525
EciI	GGCGGA	1 cut(s)	204
Ecl136II	GAGCTC	2 cut(s)	21, 82
Eco130I	CCWWGG	2 cut(s)	105, 157
Eco24I	GRGCYC	3 cut(s)	23, 84, 446
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	205
Eco53kI	GAGCTC	2 cut(s)	21, 82
Eco57I	CTGAAG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	459
Eco91I	GGTNACC	1 cut(s)	115
EcoICRI	GAGCTC	2 cut(s)	21, 82
EcoO65I	GGTNACC	1 cut(s)	115
EcoT14I	CCWWGG	2 cut(s)	105, 157
EcoT38I	GRGCYC	3 cut(s)	23, 84, 446
ErhI	CCWWGG	2 cut(s)	105, 157
FaeI	CATG	3 cut(s)	331, 387, 411
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	3 cut(s)	327, 383, 407
Fnu4HI	GCNGC	3 cut(s)	58, 70, 92
FokI	GGATG	4 cut(s)	204, 293, 319, 473
FriOI	GRGCYC	3 cut(s)	23, 84, 446
Fsp4HI	GCNGC	3 cut(s)	58, 70, 92
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	3 cut(s)	58, 70, 92
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	1 cut(s)	120
HgaI	GACGC	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	331, 387, 411
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	4 cut(s)	54, 237, 325, 337
Hpy188III	TCNNGA	1 cut(s)	468
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	307, 478
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	376, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 88, 373
HpyF3I	CTNAG	2 cut(s)	248, 438
HpySE526I	ACGT	1 cut(s)	97
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	331, 387, 411
Kzo9I	GATC	5 cut(s)	320, 359, 389, 413, 470
LmnI	GCTCC	3 cut(s)	26, 79, 268
LpnPI	CCDG	6 cut(s)	133, 188, 255, 323, 453, 504
Lsp1109I	GCAGC	3 cut(s)	44, 78, 81
LweI	GCATC	2 cut(s)	341, 495
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	4 cut(s)	62, 98, 115, 425
MalI	GATC	5 cut(s)	322, 361, 391, 415, 472
MboI	GATC	5 cut(s)	320, 359, 389, 413, 470
MboII	GAAGA	2 cut(s)	86, 512
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	4 cut(s)	23, 84, 446, 498
MluCI	AATT	2 cut(s)	255, 561
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	6 cut(s)	70, 231, 271, 455, 468, 525
MslI	CAYNNNNRTG	2 cut(s)	107, 491
MspI	CCGG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	247
MwoI	GCNNNNNNNGC	3 cut(s)	66, 88, 373
NdeII	GATC	5 cut(s)	320, 359, 389, 413, 470
NlaIII	CATG	3 cut(s)	331, 387, 411
NmuCI	GTSAC	3 cut(s)	62, 98, 425
NspI	RCATGY	1 cut(s)	411
OliI	CACNNNNGTG	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	459
PctI	GAATGC	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	59, 71, 93
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PsiI	TTATAA	1 cut(s)	560
Psp124BI	GAGCTC	2 cut(s)	23, 84
PspEI	GGTNACC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	205
PspXI	VCTCGAGB	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	413
RseI	CAYNNNNRTG	2 cut(s)	107, 491
SacI	GAGCTC	2 cut(s)	23, 84
SatI	GCNGC	3 cut(s)	58, 70, 92
Sau3AI	GATC	5 cut(s)	320, 359, 389, 413, 470
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	422
SduI	GDGCHC	4 cut(s)	23, 84, 446, 498
SetI	ASST	9 cut(s)	23, 59, 84, 100, 111, 234, 265, 294, 554
SfaNI	GCATC	2 cut(s)	341, 495
Sfr274I	CTCGAG	1 cut(s)	459
SinI	GGWCC	1 cut(s)	205
SlaI	CTCGAG	1 cut(s)	459
SmiMI	CAYNNNNRTG	2 cut(s)	107, 491
SmlI	CTYRAG	1 cut(s)	459
SmoI	CTYRAG	1 cut(s)	459
Sse9I	AATT	2 cut(s)	255, 561
SsiI	CCGC	3 cut(s)	36, 60, 189
SspMI	CTAG	1 cut(s)	549
SstI	GAGCTC	2 cut(s)	23, 84
StyI	CCWWGG	2 cut(s)	105, 157
TaaI	ACNGT	2 cut(s)	307, 478
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	460
TasI	AATT	2 cut(s)	255, 561
TscAI	CASTG	2 cut(s)	317, 483
TseFI	GTSAC	3 cut(s)	62, 98, 425
TseI	GCWGC	3 cut(s)	57, 69, 91
Tsp45I	GTSAC	3 cut(s)	62, 98, 425
TspGWI	ACGGA	2 cut(s)	13, 130
TspRI	CASTG	2 cut(s)	317, 483
VpaK11BI	GGWCC	1 cut(s)	205
XceI	RCATGY	1 cut(s)	411
XhoI	CTCGAG	1 cut(s)	459
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.