AT1G19610

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017893
Physical Location & Seq
Reverse (-)
6781483 .. 6782216
734 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19610.1

Sequence Viewer

Length: 237 bp
ATGGCTTCTTCTTACACACTTATGCTCTTCCTTTGCCTCTCCATCTTCCTTATAGCTTCCACTGAGATGATGGCGGTGGAAGGAAGAATTTGCGAGAGGAGAAGCAAGACATGGACAGGGTTTTGTGGCAACACTCGTGGCTGTGACAGTCAGTGTAAGAGATGGGAACGTGCTTCACACGGGGCTTGTCACGCTCAGTTCCCGGGTTTCGCATGTTTCTGCTACTTCAATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

78

Amino Acids

8.84

Weight (kDa)

8.44

Isoelectric Point (pI)

55.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 29 - 78 1.9e-12 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19610
fragaria_vesca FvH4_2g39480
malus_domestica MD08G1027500.v1.1
prunus_persica Prupe.1G376000_v2.0.a1
pyrus_communis pycom08g02150
rosa_chinensis RchiOBHm_Chr6g0301471
rosa_roxburghii Rroxscaffold_7G00166770
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG418700 Rh6CG432200
rosa_wichuraiana Rw6G036230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 87
AgsI TTSAA 1 cut(s) 229
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 202
ApoI RAATTY 1 cut(s) 87
AsuC2I CCSGG 2 cut(s) 203, 204
AvaI CYCGRG 1 cut(s) 202
BauI CACGAG 1 cut(s) 135
BccI CCATC 3 cut(s) 50, 64, 156
BcnI CCSGG 2 cut(s) 203, 204
Bme1390I CCNGG 2 cut(s) 203, 204
BmeT110I CYCGRG 1 cut(s) 202
BmrFI CCNGG 2 cut(s) 203, 204
BpuMI CCSGG 2 cut(s) 203, 204
BsaJI CCNNGG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 54, 209
BseRI GAGGAG 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 202
BspACI CCGC 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 55, 208
BspQI GCTCTTC 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 202
BssSI CACGAG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 63, 195
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 216
BstSCI CCNGG 2 cut(s) 201, 202
BtsIMutI CAGTG 2 cut(s) 60, 158
Cfr9I CCCGGG 1 cut(s) 202
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 2 cut(s) 111, 213
CviJI RGCY 4 cut(s) 5, 56, 141, 185
CviKI_1 RGCY 4 cut(s) 5, 56, 141, 185
DdeI CTNAG 2 cut(s) 63, 195
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 202
FaeI CATG 2 cut(s) 114, 216
FaiI YATR 4 cut(s) 23, 53, 112, 214
FatI CATG 2 cut(s) 110, 212
HapII CCGG 1 cut(s) 203
Hin1II CATG 2 cut(s) 114, 216
HpaII CCGG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 63, 195
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 2 cut(s) 114, 216
LguI GCTCTTC 1 cut(s) 32
LpnPI CCDG 2 cut(s) 102, 216
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 143, 188
MboII GAAGA 3 cut(s) 19, 37, 96
MfeI CAATTG 1 cut(s) 229
MluCI AATT 2 cut(s) 87, 229
MnlI CCTC 2 cut(s) 47, 90
MslI CAYNNNNRTG 2 cut(s) 20, 65
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 2 cut(s) 203, 204
MunI CAATTG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 2 cut(s) 203, 204
NlaIII CATG 2 cut(s) 114, 216
NmuCI GTSAC 2 cut(s) 143, 188
NspI RCATGY 1 cut(s) 216
PciSI GCTCTTC 1 cut(s) 32
RseI CAYNNNNRTG 2 cut(s) 20, 65
SapI GCTCTTC 1 cut(s) 32
ScrFI CCNGG 2 cut(s) 203, 204
SetI ASST 2 cut(s) 58, 172
SmaI CCCGGG 1 cut(s) 204
SmiMI CAYNNNNRTG 2 cut(s) 20, 65
Sse9I AATT 2 cut(s) 87, 229
SsiI CCGC 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 201, 202
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 1 cut(s) 172
TasI AATT 2 cut(s) 87, 229
TscAI CASTG 2 cut(s) 67, 158
TseFI GTSAC 2 cut(s) 143, 188
Tsp45I GTSAC 2 cut(s) 143, 188
TspMI CCCGGG 1 cut(s) 202
TspRI CASTG 2 cut(s) 67, 158
XapI RAATTY 1 cut(s) 87
XceI RCATGY 1 cut(s) 216
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XmaI CCCGGG 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.