MD08G1027500.v1.1

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0017893
Physical Location & Seq
Forward (+)
2019610 .. 2019837
228 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1027500.v1.1.491

Sequence Viewer

Length: 228 bp
ATGATTCATACTCAAATTCTATGTATGATTTTGTTTGTGACTTGTGAGATGCAGAGGTGGCAATGGTGGAAGCAAAGAATCAGCCAAAGGCGGAGCAAAACATGGTCAGGGTTTTGTGCAAACACCGGAAACTGCAACAGTCAATGCAGAAACTGGGAAGGTGCTTTGCACGGATCTTGTCACGCTCAATTCCCAGGAGTTGCTTGCTTCTGCTACTTCAGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

76

Amino Acids

8.88

Weight (kDa)

9.04

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 26 - 75 1.2e-11 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19610
fragaria_vesca FvH4_2g39480
malus_domestica MD08G1027500.v1.1
prunus_persica Prupe.1G376000_v2.0.a1
pyrus_communis pycom08g02150
rosa_chinensis RchiOBHm_Chr6g0301471
rosa_roxburghii Rroxscaffold_7G00166770
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG418700 Rh6CG432200
rosa_wichuraiana Rw6G036230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 91
AclWI GGATC 1 cut(s) 181
AcsI RAATTY 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 202
AjnI CCWGG 1 cut(s) 193
AlwI GGATC 1 cut(s) 181
AlwNI CAGNNNCTG 1 cut(s) 153
ApoI RAATTY 1 cut(s) 15
BciT130I CCWGG 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 195
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 193
BsaWI WCCGGW 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 158
BsiSI CCGG 1 cut(s) 126
Bsp143I GATC 1 cut(s) 173
BspACI CCGC 1 cut(s) 91
BspPI GGATC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 205
BstKTI GATC 1 cut(s) 176
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 205
CaiI CAGNNNCTG 1 cut(s) 153
CviAII CATG 1 cut(s) 102
CviJI RGCY 1 cut(s) 84
CviKI_1 RGCY 1 cut(s) 84
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
EciI GGCGGA 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 193
FaeI CATG 1 cut(s) 105
FaiI YATR 4 cut(s) 9, 22, 26, 103
FatI CATG 1 cut(s) 101
HapII CCGG 1 cut(s) 126
Hin1II CATG 1 cut(s) 105
HinfI GANTC 2 cut(s) 4, 78
HpaII CCGG 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 5 cut(s) 52, 119, 135, 147, 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
Hsp92II CATG 1 cut(s) 105
Kzo9I GATC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 6 cut(s) 93, 139, 139, 180, 205, 207
LweI GCATC 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 37, 179
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MflI RGATCY 1 cut(s) 173
MluCI AATT 2 cut(s) 15, 188
MnlI CCTC 1 cut(s) 48
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 58
NdeII GATC 1 cut(s) 173
NlaIII CATG 1 cut(s) 105
NmuCI GTSAC 2 cut(s) 37, 179
PfeI GAWTC 2 cut(s) 4, 78
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 153
PsuI RGATCY 1 cut(s) 173
Sau3AI GATC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 195
SetI ASST 3 cut(s) 59, 163, 224
SfaNI GCATC 1 cut(s) 39
Sse9I AATT 2 cut(s) 15, 188
SsiI CCGC 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 140
TasI AATT 2 cut(s) 15, 188
TfiI GAWTC 2 cut(s) 4, 78
TseFI GTSAC 2 cut(s) 37, 179
Tsp45I GTSAC 2 cut(s) 37, 179
TspGWI ACGGA 1 cut(s) 186
XapI RAATTY 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.