Rh6CG432200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
61243138 .. 61243446
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG432200.1

Sequence Viewer

Length: 201 bp
ATGGCACTAGGAACTCAGACCCTGCCTTACACTTTGAGCGTAAGAGATCAGAAGCAGAAATGGCTAAGCTACTTGGTCACCACCTGGTTTATCTCATCCTCTTTCTCTCTGTCTTCCTCCTCCTTGCATCGACTGAGATGGGAATGGTGGAAGCAAGAATCTGTCAAAGGCGGAGTAAAACATGGACAGGGTTATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.69

Weight (kDa)

9.99

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19610
fragaria_vesca FvH4_2g39480
malus_domestica MD08G1027500.v1.1
prunus_persica Prupe.1G376000_v2.0.a1
pyrus_communis pycom08g02150
rosa_chinensis RchiOBHm_Chr6g0301471
rosa_roxburghii Rroxscaffold_7G00166770
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG418700 Rh6CG432200
rosa_wichuraiana Rw6G036230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 171
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
AlwNI CAGNNNCTG 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 105
BccI CCATC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 85
BfaI CTAG 1 cut(s) 8
BlpI GCTNAGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 105
Bpu1102I GCTNAGC 1 cut(s) 65
BseBI CCWGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 29, 125
BseRI GAGGAG 1 cut(s) 109
Bsp143I GATC 1 cut(s) 46
Bsp1720I GCTNAGC 1 cut(s) 65
BspACI CCGC 1 cut(s) 171
BspCNI CTCAG 2 cut(s) 28, 126
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 85
BstDEI CTNAG 3 cut(s) 15, 65, 134
BstEII GGTNACC 1 cut(s) 76
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNI CCWGG 1 cut(s) 85
BstPI GGTNACC 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 22
CsiI ACCWGGT 1 cut(s) 83
CviAII CATG 1 cut(s) 182
CviJI RGCY 2 cut(s) 64, 69
CviKI_1 RGCY 2 cut(s) 64, 69
DdeI CTNAG 3 cut(s) 15, 65, 134
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EciI GGCGGA 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 76
EcoO65I GGTNACC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 83
FaeI CATG 1 cut(s) 185
FaiI YATR 2 cut(s) 183, 195
FatI CATG 1 cut(s) 181
FokI GGATG 1 cut(s) 82
FspBI CTAG 1 cut(s) 8
Hin1II CATG 1 cut(s) 185
HinfI GANTC 1 cut(s) 158
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 18, 51
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 3 cut(s) 15, 65, 134
Hsp92II CATG 1 cut(s) 185
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 4 cut(s) 35, 70, 97, 173
LweI GCATC 1 cut(s) 136
MabI ACCWGGT 1 cut(s) 83
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 1 cut(s) 105
MnlI CCTC 3 cut(s) 109, 127, 130
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 83
PspEI GGTNACC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 22
Sau3AI GATC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 85
SetI ASST 2 cut(s) 71, 86
SexAI ACCWGGT 1 cut(s) 83
SfaNI GCATC 1 cut(s) 136
SgeI CNNG 8 cut(s) 20, 34, 85, 96, 97, 136, 167, 194
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 83
TaqI TCGA 1 cut(s) 130
TfiI GAWTC 1 cut(s) 158
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.