Prupe.1G376000_v2.0.a1

Belongs to the DEFL family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
34090077 .. 34090478
402 bp
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UTR
Exon/CDS
Intron
Prupe.1G376000.1

Sequence Viewer

Length: 255 bp
ATGGCTAAGCTACTCAGTCATCCACTGTTTTATCCCATCCTCTTTCTCTTCCTCTTTATCTTTCTTGCATCAACCGATGCAGAAGTAGCAATGGTGGAAGCAAGAATCTGCCAAAGGCGTAGTAAAACATGGTCAGGGTTTTGTGGGAACACTGGAAACTGCAACCGTCAATGCAGGAACTGGGAAGGTGCTTTGCGTGGAGCTTGCCACGCTCAATCCCCAGGGTTTGCATGCTTCTGCTACTTTAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.55

Weight (kDa)

8.93

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19610
fragaria_vesca FvH4_2g39480
malus_domestica MD08G1027500.v1.1
prunus_persica Prupe.1G376000_v2.0.a1
pyrus_communis pycom08g02150
rosa_chinensis RchiOBHm_Chr6g0301471
rosa_roxburghii Rroxscaffold_7G00166770
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG418700 Rh6CG432200
rosa_wichuraiana Rw6G036230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 2 cut(s) 10, 203
AluI AGCT 2 cut(s) 10, 203
AlwNI CAGNNNCTG 1 cut(s) 180
BccI CCATC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 222
BlpI GCTNAGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 222
BmrI ACTGGG 1 cut(s) 190
BmsI GCATC 2 cut(s) 67, 77
BmuI ACTGGG 1 cut(s) 190
Bpu1102I GCTNAGC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 220, 221
Bse1I ACTGG 2 cut(s) 157, 185
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 220, 221
BseGI GGATG 2 cut(s) 19, 36
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 2 cut(s) 157, 185
Bsp1720I GCTNAGC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 2 cut(s) 157, 185
BssECI CCNNGG 2 cut(s) 220, 221
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 27, 167
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 205, 232
BstDEI CTNAG 2 cut(s) 6, 14
BstF5I GGATG 2 cut(s) 19, 36
BstMWI GCNNNNNNNGC 2 cut(s) 86, 209
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 220
BtsCI GGATG 2 cut(s) 19, 36
BtsIMutI CAGTG 2 cut(s) 23, 150
Cac8I GCNNGC 2 cut(s) 205, 232
CaiI CAGNNNCTG 1 cut(s) 180
CviAII CATG 2 cut(s) 129, 231
CviJI RGCY 3 cut(s) 5, 10, 203
CviKI_1 RGCY 3 cut(s) 5, 10, 203
DdeI CTNAG 2 cut(s) 6, 14
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 220
FaeI CATG 2 cut(s) 132, 234
FaiI YATR 2 cut(s) 130, 232
FatI CATG 2 cut(s) 128, 230
FokI GGATG 2 cut(s) 6, 23
Hin1II CATG 2 cut(s) 132, 234
HinfI GANTC 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 27, 167
HpyCH4V TGCA 5 cut(s) 68, 80, 162, 174, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 209
HpyF3I CTNAG 2 cut(s) 6, 14
Hsp92II CATG 2 cut(s) 132, 234
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 6 cut(s) 120, 138, 160, 166, 207, 234
LweI GCATC 2 cut(s) 67, 77
MboII GAAGA 1 cut(s) 40
MnlI CCTC 2 cut(s) 50, 62
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 86, 209
NlaIII CATG 2 cut(s) 132, 234
NspI RCATGY 1 cut(s) 234
PaeI GCATGC 1 cut(s) 234
PasI CCCWGGG 1 cut(s) 221
PfeI GAWTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PstNI CAGNNNCTG 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 222
SetI ASST 3 cut(s) 12, 190, 205
SfaNI GCATC 2 cut(s) 67, 77
SphI GCATGC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 27, 167
TfiI GAWTC 1 cut(s) 105
TscAI CASTG 2 cut(s) 30, 157
TspRI CASTG 2 cut(s) 30, 157
XceI RCATGY 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.