Rw6G036230

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0017893
Physical Location & Seq
Reverse (-)
60732932 .. 60733292
361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G036230.1

Sequence Viewer

Length: 249 bp
ATGGCTAAGCTACTTGGTCACCATCTGGTTTATCTCATCCTCTTTCTCTCTGTCTTCCTCCTCCTTGCATCGACTGAGATGGGAATGGTGGAAGCAAGAATCTGTCAAAGGCGGAGTAAAACATGGACAGGGTTATGTGTGAACACTGGCAACTGCCATCGTCAGTGTAGGAACTGGGAAGGTGCTCAGCGTGGAGCTTGTCATGCTCAATTCCCAGGGTTCGCATGCTTCTGCTACTTTAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

82

Amino Acids

9.33

Weight (kDa)

8.93

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 33 - 82 4.8e-12 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19610
fragaria_vesca FvH4_2g39480
malus_domestica MD08G1027500.v1.1
prunus_persica Prupe.1G376000_v2.0.a1
pyrus_communis pycom08g02150
rosa_chinensis RchiOBHm_Chr6g0301471
rosa_roxburghii Rroxscaffold_7G00166770
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG418700 Rh6CG432200
rosa_wichuraiana Rw6G036230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 112
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 2 cut(s) 10, 197
AluI AGCT 2 cut(s) 10, 197
Alw21I GWGCWC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 187
BccI CCATC 3 cut(s) 30, 73, 165
BciT130I CCWGG 1 cut(s) 216
BlpI GCTNAGC 2 cut(s) 6, 186
Bme1390I CCNGG 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 216
BmrI ACTGGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 46
Bpu1102I GCTNAGC 2 cut(s) 6, 186
BsaJI CCNNGG 2 cut(s) 214, 215
Bse1I ACTGG 2 cut(s) 151, 179
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 214, 215
BseGI GGATG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 66, 200
BseNI ACTGG 2 cut(s) 151, 179
BseRI GAGGAG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 187
Bsp1720I GCTNAGC 2 cut(s) 6, 186
BspACI CCGC 1 cut(s) 112
BspCNI CTCAG 2 cut(s) 67, 199
BsrI ACTGG 2 cut(s) 151, 179
BssECI CCNNGG 2 cut(s) 214, 215
Bst2UI CCWGG 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 3 cut(s) 6, 75, 186
BstEII GGTNACC 1 cut(s) 17
BstF5I GGATG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 228
BstPI GGTNACC 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 36
BtsIMutI CAGTG 2 cut(s) 144, 170
Cac8I GCNNGC 1 cut(s) 226
CviAII CATG 3 cut(s) 123, 203, 225
CviJI RGCY 3 cut(s) 5, 10, 197
CviKI_1 RGCY 3 cut(s) 5, 10, 197
DdeI CTNAG 3 cut(s) 6, 75, 186
EciI GGCGGA 1 cut(s) 127
Eco91I GGTNACC 1 cut(s) 17
EcoO65I GGTNACC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 214
FaeI CATG 3 cut(s) 126, 206, 228
FaiI YATR 4 cut(s) 124, 136, 204, 226
FatI CATG 3 cut(s) 122, 202, 224
FokI GGATG 1 cut(s) 23
Hin1II CATG 3 cut(s) 126, 206, 228
HinfI GANTC 1 cut(s) 99
HphI GGTGA 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 173
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 3 cut(s) 6, 75, 186
Hsp92II CATG 3 cut(s) 126, 206, 228
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 6 cut(s) 11, 114, 132, 160, 201, 228
LweI GCATC 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 17
MboII GAAGA 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 2 cut(s) 209, 241
MnlI CCTC 3 cut(s) 50, 68, 71
MseI TTAA 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 203
NlaIII CATG 3 cut(s) 126, 206, 228
NmuCI GTSAC 1 cut(s) 17
NspI RCATGY 1 cut(s) 228
PaeI GCATGC 1 cut(s) 228
PasI CCCWGGG 1 cut(s) 215
PfeI GAWTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 17
PspGI CCWGG 1 cut(s) 214
SaqAI TTAA 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 187
SetI ASST 3 cut(s) 12, 184, 199
SfaNI GCATC 1 cut(s) 77
SphI GCATGC 1 cut(s) 228
Sse9I AATT 2 cut(s) 209, 241
SsiI CCGC 1 cut(s) 112
StyD4I CCNGG 1 cut(s) 214
TaqI TCGA 1 cut(s) 71
TasI AATT 2 cut(s) 209, 241
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 2 cut(s) 151, 170
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
TspRI CASTG 2 cut(s) 151, 170
XceI RCATGY 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.