Rroxscaffold_7G00166770

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017893
Physical Location & Seq
Forward (+)
8141393 .. 8141799
407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00166770.1

Sequence Viewer

Length: 324 bp
ATGGCACTAGGAACTCAGACCCTGCCTTACACTTTGAGCATAAGAGATCAGAAGCAAAAATGGCTAAGCTACTTGGTCACCACCTGGTTTATCTCATCCTCTTTCCCTCTGTCTTCCTCCTCCTTGCATCGACTGGACTTGTTACATGCAGAGATGGGAATGGTGGAAGCAAGAATCTGTCAAAGGCGGAGTAAAACATGGACAGGGTTATGTGTGAACACTGGCAACTGCCATCGTCAGTGTAGGAACTGGGAAGGTGCTCAGCGTGGAGCTTGTCATGCTCAATTCCCAGGGTTCGCATGCTTCTGCTACTTTAGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

107

Amino Acids

12.29

Weight (kDa)

9.16

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 58 - 105 3.3e-11 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19610
fragaria_vesca FvH4_2g39480
malus_domestica MD08G1027500.v1.1
prunus_persica Prupe.1G376000_v2.0.a1
pyrus_communis pycom08g02150
rosa_chinensis RchiOBHm_Chr6g0301471
rosa_roxburghii Rroxscaffold_7G00166770
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG418700 Rh6CG432200
rosa_wichuraiana Rw6G036230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 187
AjnI CCWGG 2 cut(s) 83, 289
AluBI AGCT 2 cut(s) 69, 272
AluI AGCT 2 cut(s) 69, 272
Alw21I GWGCWC 1 cut(s) 262
AlwNI CAGNNNCTG 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 262
BccI CCATC 2 cut(s) 148, 240
BciT130I CCWGG 2 cut(s) 85, 291
BfaI CTAG 1 cut(s) 8
BlpI GCTNAGC 2 cut(s) 65, 261
Bme1390I CCNGG 2 cut(s) 85, 291
BmrFI CCNGG 2 cut(s) 85, 291
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 1 cut(s) 136
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 105
Bpu1102I GCTNAGC 2 cut(s) 65, 261
BsaJI CCNNGG 2 cut(s) 289, 290
Bse1I ACTGG 3 cut(s) 138, 226, 254
BseBI CCWGG 2 cut(s) 85, 291
BseDI CCNNGG 2 cut(s) 289, 290
BseGI GGATG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 29, 275
BseNI ACTGG 3 cut(s) 138, 226, 254
BseRI GAGGAG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 1 cut(s) 46
Bsp1720I GCTNAGC 2 cut(s) 65, 261
BspACI CCGC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 28, 274
BsrI ACTGG 3 cut(s) 138, 226, 254
BssECI CCNNGG 2 cut(s) 289, 290
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 85, 291
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 15, 65, 261
BstEII GGTNACC 1 cut(s) 76
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 61, 278
BstNI CCWGG 2 cut(s) 85, 291
BstNSI RCATGY 2 cut(s) 149, 303
BstPI GGTNACC 1 cut(s) 76
BstSCI CCNGG 2 cut(s) 83, 289
BstV2I GAAGAC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 2 cut(s) 219, 245
Cac8I GCNNGC 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 22
CsiI ACCWGGT 1 cut(s) 83
CviAII CATG 4 cut(s) 146, 198, 278, 300
CviJI RGCY 3 cut(s) 64, 69, 272
CviKI_1 RGCY 3 cut(s) 64, 69, 272
DdeI CTNAG 3 cut(s) 15, 65, 261
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EciI GGCGGA 1 cut(s) 202
Eco91I GGTNACC 1 cut(s) 76
EcoO65I GGTNACC 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 83, 289
FaeI CATG 4 cut(s) 149, 201, 281, 303
FaiI YATR 6 cut(s) 41, 147, 199, 211, 279, 301
FatI CATG 4 cut(s) 145, 197, 277, 299
FokI GGATG 1 cut(s) 82
FspBI CTAG 1 cut(s) 8
Hin1II CATG 4 cut(s) 149, 201, 281, 303
HinfI GANTC 1 cut(s) 174
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 18, 51
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 248
HpyCH4V TGCA 2 cut(s) 127, 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 278
HpyF3I CTNAG 3 cut(s) 15, 65, 261
Hsp92II CATG 4 cut(s) 149, 201, 281, 303
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 9 cut(s) 35, 70, 97, 119, 189, 207, 235, 276, 303
LweI GCATC 1 cut(s) 136
MabI ACCWGGT 1 cut(s) 83
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 2 cut(s) 76, 141
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 1 cut(s) 284
MnlI CCTC 4 cut(s) 109, 117, 127, 130
MspR9I CCNGG 2 cut(s) 85, 291
MvaI CCWGG 2 cut(s) 85, 291
MwoI GCNNNNNNNGC 2 cut(s) 61, 278
NdeII GATC 1 cut(s) 46
NlaIII CATG 4 cut(s) 149, 201, 281, 303
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 2 cut(s) 149, 303
PaeI GCATGC 1 cut(s) 303
PasI CCCWGGG 1 cut(s) 290
PfeI GAWTC 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 83, 289
PspEI GGTNACC 1 cut(s) 76
PspGI CCWGG 2 cut(s) 83, 289
PstNI CAGNNNCTG 1 cut(s) 22
Sau3AI GATC 1 cut(s) 46
ScrFI CCNGG 2 cut(s) 85, 291
SduI GDGCHC 1 cut(s) 262
SetI ASST 4 cut(s) 71, 86, 259, 274
SexAI ACCWGGT 1 cut(s) 83
SfaNI GCATC 1 cut(s) 136
SphI GCATGC 1 cut(s) 303
Sse9I AATT 1 cut(s) 284
SsiI CCGC 1 cut(s) 187
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 83, 289
TaqI TCGA 1 cut(s) 130
TasI AATT 1 cut(s) 284
TfiI GAWTC 1 cut(s) 174
TscAI CASTG 2 cut(s) 226, 245
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspRI CASTG 2 cut(s) 226, 245
XceI RCATGY 2 cut(s) 149, 303
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.