FvH4_2g39480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017893
Physical Location & Seq
Forward (+)
28356342 .. 28356916
575 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39480.t1

Sequence Viewer

Length: 366 bp
ATGAACGAAATCGATCCACCTGTCTACGGCGAGAAGAATTGGAGTTCGAGAGCAAGAGATCAGAAGCAAAAATGGCTAAGCTACTTGGTTATCACCTTGTTTATCCCATCCTCTTCCTCTTCATCTTCCTCCTCCTTGCATCGACTGAGATGGGAATGCTGGAAGCAAGAATCTGTCAAAGGCGGAGTAAAACATGGACAGGGTTATGTGCGAACACCGGAAACTGCCATCGTCAGTGTAGGAACTGGGAAGGTGCTCAGCGTGGAGCTTGTCATGCTCAATTCCCAGGGTTCGCATGCTTCTGCTACTTCAATTGTTGATTTTCTATCAACCACAGCAGCAGCCAGCAGTTTCTCTATACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.21

Weight (kDa)

9.21

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19610
fragaria_vesca FvH4_2g39480
malus_domestica MD08G1027500.v1.1
prunus_persica Prupe.1G376000_v2.0.a1
pyrus_communis pycom08g02150
rosa_chinensis RchiOBHm_Chr6g0301471
rosa_roxburghii Rroxscaffold_7G00166770
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG418700 Rh6CG432200
rosa_wichuraiana Rw6G036230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 312
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 2 cut(s) 81, 268
AluI AGCT 2 cut(s) 81, 268
Alw21I GWGCWC 1 cut(s) 258
AlwI GGATC 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 338, 341
AsuHPI GGTGA 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 350, 353
BccI CCATC 3 cut(s) 115, 144, 236
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 287
BisI GCNGC 2 cut(s) 339, 342
BlpI GCTNAGC 2 cut(s) 77, 257
BlsI GCNGC 2 cut(s) 340, 343
Bme1390I CCNGG 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 255
Bpu1102I GCTNAGC 2 cut(s) 77, 257
Bsa29I ATCGAT 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 285, 286
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 287
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 285, 286
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 2 cut(s) 137, 271
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 2 cut(s) 350, 353
BshVI ATCGAT 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 26
BsmI GAATGC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 2 cut(s) 13, 58
Bsp1720I GCTNAGC 2 cut(s) 77, 257
BspACI CCGC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 138, 270
BspDI ATCGAT 1 cut(s) 12
BspPI GGATC 1 cut(s) 8
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 285, 286
BssMI GATC 2 cut(s) 13, 58
Bst2UI CCWGG 1 cut(s) 287
Bst6I CTCTTC 2 cut(s) 118, 124
BstC8I GCNNGC 2 cut(s) 297, 346
BstDEI CTNAG 3 cut(s) 77, 146, 257
BstF5I GGATG 1 cut(s) 107
BstKTI GATC 2 cut(s) 16, 61
BstMBI GATC 2 cut(s) 13, 58
BstMWI GCNNNNNNNGC 2 cut(s) 73, 274
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 350, 353
Bsu15I ATCGAT 1 cut(s) 12
BsuTUI ATCGAT 1 cut(s) 12
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 2 cut(s) 297, 346
ClaI ATCGAT 1 cut(s) 12
CviAII CATG 3 cut(s) 194, 274, 296
CviJI RGCY 4 cut(s) 76, 81, 268, 344
CviKI_1 RGCY 4 cut(s) 76, 81, 268, 344
DdeI CTNAG 3 cut(s) 77, 146, 257
DpnI GATC 2 cut(s) 15, 60
DpnII GATC 2 cut(s) 13, 58
Eam1104I CTCTTC 2 cut(s) 118, 124
EarI CTCTTC 2 cut(s) 118, 124
EciI GGCGGA 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 285
FaeI CATG 3 cut(s) 197, 277, 299
FaiI YATR 5 cut(s) 195, 207, 275, 297, 359
FatI CATG 3 cut(s) 193, 273, 295
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 339, 342
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 2 cut(s) 339, 342
GluI GCNGC 2 cut(s) 339, 342
HapII CCGG 1 cut(s) 218
Hin1II CATG 3 cut(s) 197, 277, 299
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 218
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 244
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 274
HpyF3I CTNAG 3 cut(s) 77, 146, 257
Hsp92II CATG 3 cut(s) 197, 277, 299
Kzo9I GATC 2 cut(s) 13, 58
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 8 cut(s) 33, 145, 185, 231, 231, 272, 299, 358
Lsp1109I GCAGC 2 cut(s) 350, 353
LweI GCATC 1 cut(s) 148
MalI GATC 2 cut(s) 15, 60
MboI GATC 2 cut(s) 13, 58
MboII GAAGA 4 cut(s) 46, 105, 111, 117
MfeI CAATTG 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 3 cut(s) 37, 280, 312
MnlI CCTC 4 cut(s) 121, 127, 139, 142
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 287
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 2 cut(s) 73, 274
NdeII GATC 2 cut(s) 13, 58
NlaIII CATG 3 cut(s) 197, 277, 299
NspI RCATGY 1 cut(s) 299
PaeI GCATGC 1 cut(s) 299
PasI CCCWGGG 1 cut(s) 286
PctI GAATGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 2 cut(s) 340, 343
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
SatI GCNGC 2 cut(s) 339, 342
Sau3AI GATC 2 cut(s) 13, 58
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 258
SetI ASST 5 cut(s) 22, 83, 98, 255, 270
SfaNI GCATC 1 cut(s) 148
SphI GCATGC 1 cut(s) 299
Sse9I AATT 3 cut(s) 37, 280, 312
SsiI CCGC 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 285
TaqI TCGA 3 cut(s) 12, 47, 142
TasI AATT 3 cut(s) 37, 280, 312
TfiI GAWTC 1 cut(s) 170
TscAI CASTG 1 cut(s) 241
TseI GCWGC 2 cut(s) 338, 341
TspDTI ATGAA 2 cut(s) 17, 111
TspRI CASTG 1 cut(s) 241
XceI RCATGY 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.