pycom08g02150

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0017893
Physical Location & Seq
Forward (+)
1608014 .. 1608241
228 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g02150.1

Sequence Viewer

Length: 228 bp
ATGATTCGTACTCAAATTCTATATATGATTTTGTTTGTGACTTGTGAGATGCAGAGGTGGCAATGGTGGAAGCAAAGAATCTGCCAAAGGCGGAGCAAAACATGGTCAGGGTTTTGCGCAAACACCGGAAACTGCAACAGTCAATGCAGAAACTGGGAAGGTGCTTTGCACGGAGCTTGTCACGCTCAATTCCCAGGAGTTGCTTGCTTCTGCTACTTCAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

76

Amino Acids

8.96

Weight (kDa)

9.19

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 26 - 75 2.1e-12 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19610
fragaria_vesca FvH4_2g39480
malus_domestica MD08G1027500.v1.1
prunus_persica Prupe.1G376000_v2.0.a1
pyrus_communis pycom08g02150
rosa_chinensis RchiOBHm_Chr6g0301471
rosa_roxburghii Rroxscaffold_7G00166770
rosa_rugosa Rorug06G0305100
rosa_samantha Rh6AG418700 Rh6CG432200
rosa_wichuraiana Rw6G036230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 118
AciI CCGC 1 cut(s) 91
AcsI RAATTY 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 202
AfaI GTAC 1 cut(s) 10
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AlwNI CAGNNNCTG 1 cut(s) 153
ApoI RAATTY 1 cut(s) 15
AspLEI GCGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 195
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 193
BsaWI WCCGGW 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 158
BsiSI CCGG 1 cut(s) 126
BspACI CCGC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 205
BstHHI GCGC 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 58, 182
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 205
CaiI CAGNNNCTG 1 cut(s) 153
CfoI GCGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 102
CviJI RGCY 1 cut(s) 176
CviKI_1 RGCY 1 cut(s) 176
CviQI GTAC 1 cut(s) 9
EciI GGCGGA 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 193
FaeI CATG 1 cut(s) 105
FaiI YATR 4 cut(s) 22, 24, 26, 103
FatI CATG 1 cut(s) 101
FspI TGCGCA 1 cut(s) 118
GlaI GCGC 1 cut(s) 118
HapII CCGG 1 cut(s) 126
HhaI GCGC 1 cut(s) 119
Hin1II CATG 1 cut(s) 105
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HinfI GANTC 2 cut(s) 4, 78
HpaII CCGG 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 4 cut(s) 52, 135, 147, 169
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 182
Hsp92II CATG 1 cut(s) 105
HspAI GCGC 1 cut(s) 117
LmnI GCTCC 2 cut(s) 93, 173
LpnPI CCDG 5 cut(s) 93, 139, 139, 180, 207
LweI GCATC 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 37, 179
MluCI AATT 2 cut(s) 15, 188
MnlI CCTC 1 cut(s) 48
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 58, 182
NlaIII CATG 1 cut(s) 105
NmuCI GTSAC 2 cut(s) 37, 179
NsbI TGCGCA 1 cut(s) 118
PfeI GAWTC 2 cut(s) 4, 78
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 153
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 195
SetI ASST 3 cut(s) 59, 163, 178
SfaNI GCATC 1 cut(s) 39
Sse9I AATT 2 cut(s) 15, 188
SsiI CCGC 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 140
TasI AATT 2 cut(s) 15, 188
TfiI GAWTC 2 cut(s) 4, 78
TseFI GTSAC 2 cut(s) 37, 179
Tsp45I GTSAC 2 cut(s) 37, 179
TspGWI ACGGA 1 cut(s) 186
XapI RAATTY 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.