AT1G19680

protein binding, zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010718
Physical Location & Seq
Forward (+)
6805430 .. 6807862
2433 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19680.1

Sequence Viewer

Length: 1335 bp
ATGGGGTCTGTTTGCTGTGTGGCTGCAAAGGACAGAAATGTTCCCAGTGGAGCTATTGATAATTCAGTGTGTTCACCATCGTGGAGTTTTCGACGGGACAACAGGAGGCGTGTAGCTGATGAGATTAAAGATTCATCTAATCATAATGTTGGGAGTAGAGGTATTGACATCGATAAGTTGTCGTTAGGCTTAGAGAGAGGACCTCCGTCATCTGAAACTGGGGGTTTAGCTACTCTTGGCTCTCAGAAATCCGCAGACTCAGAGATGGGCACAGCTTCGATGGTTACAGCTCCTTTAGCGGGTACAAGTTTGGCGATTCGATCTCCTTCAGATGTATCCTTGGCAAGTCCTGTTCGTGTTGAGGTGAAGAATATAGTTGACTCATCAGATATTGTTTCATCAGTTTTACCAAATCCGTCAAGTTCCACCTCGGTCTCTGATCTTCCTTCAGCTCACACACATTCACTTCCTCCCAGATCAACTCCGTCTAGACGTGCTCGAGGTTCACCTGGGCAGCAGTTGTTTAGGCAGGTTTCTGATAGTCAAACTTTGGGATTGAAATCTCCCAATAATTACTCAACATCTGAAGGAAGGTCGTCCTTTGTGCTTTCGACCTGTAGTAATGACACTGCCACTGGGTCCCATTTTGCTTCTTCTGAAGGTGGCTGGTCCATAAACGCCTTTTGTGAGCTCGTGGCTCAGTCTCAAAGGGAGAGATGGTCTTTTGATAATGAGCACTTAGGTTCCGGACGACGAAGACTAAGTGGGTGTAGTAGTAGCAGATTCTCATGCTCCCCTTCTGTTGATCAGCAGACTTGTGGGCGTTGCTCAAAGCTTTTAACTGAAAGGTCTCCAGTTGCCAGGTTTGACCTTCCAATTCCTGCTGTTCTAGCGTGCGGCCATGTTTACCATGCGGCATGCTTAGAGACAATGACAAATGAAACAGAGAAGTATGATCCTACGTGTCCCATATGCACAGAGACACAGGTTACTAAATTATCGAGGAAAGCTCTAAAAGCCGAGGCAGAATTGAAGGCAACGAGTTACAAAAGGTGTAAGAACCGTGTGGTAGATAGTTATGTCCGCAGTGAATGTGAGGATCTTATGTTCCAGAATCTAGGGAAACGAGAAGGAAAAGGTCTGAAGATGGATCCTAGTTCGAATACCAAAGGCTCCACGTCTAAGTCTTTTATGAAATGGCACTTCGGTTCCGTCAGCACCAAGTGGAGTAAAGCCAGGGATTCTACCTCGAAGAAGAGCTTTTGGTCCAGACATAGTAATAAAAGATTAAGTCATTCTTTTTCAAGCGTTGAGGGCCTTAATCAGGCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4

Protein Analysis

444

Amino Acids

47.97

Weight (kDa)

9.24

Isoelectric Point (pI)

61.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19680 AT1G75400
fragaria_vesca FvH4_7g07801 FvH4_7g07801 FvH4_7g07801
malus_domestica MD03G1146100.v1.1
pyrus_communis pycom03g10050
rosa_chinensis RchiOBHm_Chr5g0045191
rosa_laevigata RLG00000034342
rosa_multiflora Rmu_co8061458.1_g000001 Rmu_sc0001773.1_g000013
rosa_roxburghii Rroxscaffold_1G00035840
rosa_rugosa Rorug05G0221500.1 Rorug05G0221600
rosa_samantha Rh5AG302900 Rh5BG311400 Rh5CG337400 Rh5DG321600
rosa_wichuraiana Rw5G028110 Rw5G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 520
AccIII TCCGGA 1 cut(s) 746
AciI CCGC 5 cut(s) 252, 299, 897, 914, 1084
AclWI GGATC 4 cut(s) 950, 1107, 1145, 1158
AcoI YGGCCR 1 cut(s) 898
AcuI CTGAAG 5 cut(s) 312, 432, 606, 678, 1163
AdeI CACNNNGTG 1 cut(s) 1224
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 2 cut(s) 299, 1324
AflIII ACRYGT 1 cut(s) 962
AgsI TTSAA 3 cut(s) 559, 1033, 1305
AjiI CACGTC 2 cut(s) 494, 1179
AjnI CCWGG 3 cut(s) 508, 860, 1235
AleI CACNNNNGTG 1 cut(s) 79
AloI GAACNNNNNNTCC 2 cut(s) 1091, 1123
Alw21I GWGCWC 3 cut(s) 499, 693, 738
Alw26I GTCTC 5 cut(s) 439, 708, 855, 920, 974
AlwI GGATC 4 cut(s) 950, 1107, 1145, 1158
Ama87I CYCGRG 1 cut(s) 498
Aor13HI TCCGGA 1 cut(s) 746
AoxI GGCC 2 cut(s) 898, 1315
ApeKI GCWGC 2 cut(s) 23, 514
AspS9I GGNCC 5 cut(s) 200, 639, 669, 1266, 1315
AsuHPI GGTGA 3 cut(s) 66, 376, 498
AsuII TTCGAA 1 cut(s) 1160
AvaI CYCGRG 1 cut(s) 498
AvaII GGWCC 4 cut(s) 200, 639, 669, 1266
BaeGI GKGCMC 1 cut(s) 272
BamHI GGATCC 1 cut(s) 1150
BanII GRGCYC 1 cut(s) 693
BauI CACGAG 1 cut(s) 692
BbsI GAAGAC 1 cut(s) 763
Bbv12I GWGCWC 3 cut(s) 499, 693, 738
BbvI GCAGC 2 cut(s) 10, 526
BccI CCATC 5 cut(s) 85, 259, 274, 711, 1141
BciT130I CCWGG 3 cut(s) 510, 862, 1237
BciVI GTATCC 1 cut(s) 346
BclI TGATCA 1 cut(s) 805
BcoDI GTCTC 5 cut(s) 439, 708, 855, 920, 974
BfaI CTAG 4 cut(s) 489, 890, 1118, 1155
BfmI CTRYAG 1 cut(s) 616
BfuAI ACCTGC 1 cut(s) 520
BfuI GTATCC 1 cut(s) 346
BisI GCNGC 4 cut(s) 24, 515, 898, 915
BlsI GCNGC 4 cut(s) 25, 516, 899, 916
Bme1390I CCNGG 3 cut(s) 510, 862, 1237
Bme18I GGWCC 4 cut(s) 200, 639, 669, 1266
BmeT110I CYCGRG 1 cut(s) 498
BmgBI CACGTC 2 cut(s) 494, 1179
BmgT120I GGNCC 5 cut(s) 200, 639, 669, 1266, 1315
BmiI GGNNCC 6 cut(s) 640, 641, 745, 1152, 1174, 1210
BmrFI CCNGG 3 cut(s) 510, 862, 1237
BmrI ACTGGG 3 cut(s) 39, 228, 645
BmuI ACTGGG 3 cut(s) 39, 228, 645
BoxI GACNNNNGTC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 763
BplI GAGNNNNNCTC 4 cut(s) 187, 219, 994, 1026
BpmI CTGGAG 1 cut(s) 837
Bpu14I TTCGAA 1 cut(s) 1160
Bsa29I ATCGAT 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 963
BsaBI GATNNNNATC 1 cut(s) 559
BsaI GGTCTC 2 cut(s) 439, 855
BsaJI CCNNGG 5 cut(s) 339, 429, 509, 1020, 1236
BsaWI WCCGGW 1 cut(s) 746
BsaXI ACNNNNNCTCC 4 cut(s) 145, 175, 704, 734
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 1324
Bse1I ACTGG 4 cut(s) 45, 223, 640, 854
Bse8I GATNNNNATC 1 cut(s) 559
BseAI TCCGGA 1 cut(s) 746
BseBI CCWGG 3 cut(s) 510, 862, 1237
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 5 cut(s) 339, 429, 509, 1020, 1236
BseJI GATNNNNATC 1 cut(s) 559
BseLI CCNNNNNNNGG 2 cut(s) 299, 1324
BseMII CTCAG 3 cut(s) 257, 273, 713
BseNI ACTGG 4 cut(s) 45, 223, 640, 854
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 2 cut(s) 10, 526
BshFI GGCC 2 cut(s) 900, 1317
BshVI ATCGAT 1 cut(s) 171
BsiHKAI GWGCWC 3 cut(s) 499, 693, 738
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 1 cut(s) 747
BslFI GGGAC 3 cut(s) 110, 625, 951
BslI CCNNNNNNNGG 2 cut(s) 299, 1324
BsmAI GTCTC 5 cut(s) 439, 708, 855, 920, 974
BsmFI GGGAC 3 cut(s) 110, 625, 951
BsnI GGCC 2 cut(s) 900, 1317
Bso31I GGTCTC 2 cut(s) 439, 855
BsoBI CYCGRG 1 cut(s) 498
Bsp119I TTCGAA 1 cut(s) 1160
Bsp1286I GDGCHC 4 cut(s) 272, 499, 693, 738
Bsp13I TCCGGA 1 cut(s) 746
Bsp143I GATC 7 cut(s) 320, 439, 476, 805, 955, 1099, 1150
BspACI CCGC 5 cut(s) 252, 299, 897, 914, 1084
BspANI GGCC 2 cut(s) 900, 1317
BspCNI CTCAG 3 cut(s) 256, 272, 712
BspDI ATCGAT 1 cut(s) 171
BspEI TCCGGA 1 cut(s) 746
BspLI GGNNCC 6 cut(s) 640, 641, 745, 1152, 1174, 1210
BspMI ACCTGC 1 cut(s) 520
BspPI GGATC 4 cut(s) 950, 1107, 1145, 1158
BspQI GCTCTTC 1 cut(s) 1250
BspT104I TTCGAA 1 cut(s) 1160
BspTNI GGTCTC 2 cut(s) 439, 855
BsrI ACTGG 4 cut(s) 45, 223, 640, 854
BssECI CCNNGG 5 cut(s) 339, 429, 509, 1020, 1236
BssMI GATC 7 cut(s) 320, 439, 476, 805, 955, 1099, 1150
BssSI CACGAG 1 cut(s) 692
BssT1I CCWWGG 1 cut(s) 339
Bst2BI CACGAG 1 cut(s) 692
Bst2UI CCWGG 3 cut(s) 510, 862, 1237
Bst4CI ACNGT 1 cut(s) 1064
Bst6I CTCTTC 1 cut(s) 1250
BstBAI YACGTR 1 cut(s) 963
BstBI TTCGAA 1 cut(s) 1160
BstC8I GCNNGC 2 cut(s) 895, 919
BstDEI CTNAG 8 cut(s) 190, 243, 259, 699, 739, 761, 922, 1182
BstENI CCTNNNNNAGG 1 cut(s) 1322
BstKTI GATC 7 cut(s) 323, 442, 479, 808, 958, 1102, 1153
BstMAI GTCTC 5 cut(s) 439, 708, 855, 920, 974
BstMBI GATC 7 cut(s) 320, 439, 476, 805, 955, 1099, 1150
BstMWI GCNNNNNNNGC 4 cut(s) 296, 890, 1016, 1314
BstNI CCWGG 3 cut(s) 510, 862, 1237
BstNSI RCATGY 1 cut(s) 921
BstPAI GACNNNNGTC 1 cut(s) 205
BstSCI CCNGG 3 cut(s) 508, 860, 1235
BstSFI CTRYAG 1 cut(s) 616
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 2 cut(s) 10, 526
BstV2I GAAGAC 1 cut(s) 763
BstX2I RGATCY 2 cut(s) 1099, 1150
BstYI RGATCY 2 cut(s) 1099, 1150
Bsu15I ATCGAT 1 cut(s) 171
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 2 cut(s) 900, 1317
BsuTUI ATCGAT 1 cut(s) 171
BtrI CACGTC 2 cut(s) 494, 1179
BtsI GCAGTG 2 cut(s) 627, 1093
BtsIMutI CAGTG 5 cut(s) 52, 72, 627, 633, 1093
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 895, 919
Cfr13I GGNCC 5 cut(s) 200, 639, 669, 1266, 1315
ClaI ATCGAT 1 cut(s) 171
Csp6I GTAC 1 cut(s) 303
CviAII CATG 5 cut(s) 789, 902, 911, 918, 1332
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 8 cut(s) 190, 243, 259, 699, 739, 761, 922, 1182
DpnI GATC 7 cut(s) 322, 441, 478, 807, 957, 1101, 1152
DpnII GATC 7 cut(s) 320, 439, 476, 805, 955, 1099, 1150
DraIII CACNNNGTG 1 cut(s) 1224
EaeI YGGCCR 1 cut(s) 898
Eam1104I CTCTTC 1 cut(s) 1250
EarI CTCTTC 1 cut(s) 1250
Ecl136II GAGCTC 1 cut(s) 691
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 693
Eco31I GGTCTC 2 cut(s) 439, 855
Eco47I GGWCC 4 cut(s) 200, 639, 669, 1266
Eco53kI GAGCTC 1 cut(s) 691
Eco57I CTGAAG 5 cut(s) 312, 432, 606, 678, 1163
Eco88I CYCGRG 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 691
EcoNI CCTNNNNNAGG 1 cut(s) 1322
EcoO109I RGGNCCY 3 cut(s) 200, 639, 1315
EcoRII CCWGG 3 cut(s) 508, 860, 1235
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 5 cut(s) 792, 905, 914, 921, 1335
FalI AAGNNNNNCTT 4 cut(s) 1244, 1276, 1282, 1314
FaqI GGGAC 3 cut(s) 110, 625, 951
FatI CATG 5 cut(s) 788, 901, 910, 917, 1331
FauI CCCGC 1 cut(s) 292
FauNDI CATATG 1 cut(s) 971
FbaI TGATCA 1 cut(s) 805
Fnu4HI GCNGC 4 cut(s) 24, 515, 898, 915
FriOI GRGCYC 1 cut(s) 693
Fsp4HI GCNGC 4 cut(s) 24, 515, 898, 915
FspBI CTAG 4 cut(s) 489, 890, 1118, 1155
GluI GCNGC 4 cut(s) 24, 515, 898, 915
GsuI CTGGAG 1 cut(s) 837
HaeIII GGCC 2 cut(s) 900, 1317
HapII CCGG 1 cut(s) 747
Hin1II CATG 5 cut(s) 792, 905, 914, 921, 1335
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 833
HinfI GANTC 7 cut(s) 131, 257, 316, 380, 783, 1114, 1241
HpaII CCGG 1 cut(s) 747
HphI GGTGA 3 cut(s) 66, 376, 498
Hpy166II GTNNAC 4 cut(s) 74, 379, 506, 907
Hpy188III TCNNGA 4 cut(s) 489, 747, 1111, 1269
Hpy8I GTNNAC 4 cut(s) 74, 379, 506, 907
Hpy99I CGWCG 2 cut(s) 96, 756
HpyAV CCTTC 9 cut(s) 336, 456, 581, 585, 653, 807, 881, 1027, 1124
HpyCH4III ACNGT 1 cut(s) 1064
HpyCH4IV ACGT 3 cut(s) 493, 962, 1178
HpyCH4V TGCA 2 cut(s) 26, 975
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 890, 1016, 1314
HpyF3I CTNAG 8 cut(s) 190, 243, 259, 699, 739, 761, 922, 1182
HpySE526I ACGT 3 cut(s) 493, 962, 1178
Hsp92II CATG 5 cut(s) 792, 905, 914, 921, 1335
KflI GGGWCCC 1 cut(s) 639
Kpn2I TCCGGA 1 cut(s) 746
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 7 cut(s) 320, 439, 476, 805, 955, 1099, 1150
LguI GCTCTTC 1 cut(s) 1250
LmnI GCTCC 4 cut(s) 50, 295, 797, 1178
Lsp1109I GCAGC 2 cut(s) 10, 526
MaeI CTAG 4 cut(s) 489, 890, 1118, 1155
MaeII ACGT 3 cut(s) 493, 962, 1178
MaeIII GTNAC 3 cut(s) 283, 988, 1043
MalI GATC 7 cut(s) 322, 441, 478, 807, 957, 1101, 1152
MboI GATC 7 cut(s) 320, 439, 476, 805, 955, 1099, 1150
MboII GAAGA 7 cut(s) 379, 434, 645, 768, 1156, 1264, 1267
MflI RGATCY 2 cut(s) 1099, 1150
MhlI GDGCHC 4 cut(s) 272, 499, 693, 738
MluCI AATT 5 cut(s) 61, 571, 876, 995, 1028
MlyI GAGTC 2 cut(s) 251, 374
MroI TCCGGA 1 cut(s) 746
MseI TTAA 4 cut(s) 126, 839, 1289, 1320
MslI CAYNNNNRTG 1 cut(s) 79
MspI CCGG 1 cut(s) 747
MspR9I CCNGG 3 cut(s) 510, 862, 1237
MvaI CCWGG 3 cut(s) 510, 862, 1237
MwoI GCNNNNNNNGC 4 cut(s) 296, 890, 1016, 1314
NdeI CATATG 1 cut(s) 971
NdeII GATC 7 cut(s) 320, 439, 476, 805, 955, 1099, 1150
NlaIII CATG 5 cut(s) 792, 905, 914, 921, 1335
NlaIV GGNNCC 6 cut(s) 640, 641, 745, 1152, 1174, 1210
NmeAIII GCCGAG 1 cut(s) 1045
NspI RCATGY 1 cut(s) 921
NspV TTCGAA 1 cut(s) 1160
OliI CACNNNNGTG 1 cut(s) 79
PaeI GCATGC 1 cut(s) 921
PaeR7I CTCGAG 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 1250
PfeI GAWTC 5 cut(s) 131, 316, 783, 1114, 1241
PkrI GCNGC 4 cut(s) 25, 516, 899, 916
PleI GAGTC 2 cut(s) 251, 374
PpsI GAGTC 2 cut(s) 251, 374
Ppu21I YACGTR 1 cut(s) 963
PpuMI RGGWCCY 2 cut(s) 200, 639
PshAI GACNNNNGTC 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 693
Psp5II RGGWCCY 2 cut(s) 200, 639
Psp6I CCWGG 3 cut(s) 508, 860, 1235
PspGI CCWGG 3 cut(s) 508, 860, 1235
PspN4I GGNNCC 6 cut(s) 640, 641, 745, 1152, 1174, 1210
PspPI GGNCC 5 cut(s) 200, 639, 669, 1266, 1315
PspPPI RGGWCCY 2 cut(s) 200, 639
PspXI VCTCGAGB 1 cut(s) 498
PsuI RGATCY 2 cut(s) 1099, 1150
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
RseI CAYNNNNRTG 1 cut(s) 79
SacI GAGCTC 1 cut(s) 693
SapI GCTCTTC 1 cut(s) 1250
SaqAI TTAA 4 cut(s) 126, 839, 1289, 1320
SatI GCNGC 4 cut(s) 24, 515, 898, 915
Sau3AI GATC 7 cut(s) 320, 439, 476, 805, 955, 1099, 1150
Sau96I GGNCC 5 cut(s) 200, 639, 669, 1266, 1315
SchI GAGTC 2 cut(s) 251, 374
ScrFI CCNGG 3 cut(s) 510, 862, 1237
SduI GDGCHC 4 cut(s) 272, 499, 693, 738
SfcI CTRYAG 1 cut(s) 616
Sfr274I CTCGAG 1 cut(s) 498
SfuI TTCGAA 1 cut(s) 1160
SinI GGWCC 4 cut(s) 200, 639, 669, 1266
SlaI CTCGAG 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
SphI GCATGC 1 cut(s) 921
Sse9I AATT 5 cut(s) 61, 571, 876, 995, 1028
SsiI CCGC 5 cut(s) 252, 299, 897, 914, 1084
SspMI CTAG 4 cut(s) 489, 890, 1118, 1155
SstI GAGCTC 1 cut(s) 693
StyD4I CCNGG 3 cut(s) 508, 860, 1235
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 1064
TaiI ACGT 3 cut(s) 496, 965, 1181
TaqI TCGA 9 cut(s) 91, 171, 278, 319, 499, 611, 1001, 1160, 1250
TaqII GACCGA 1 cut(s) 421
TasI AATT 5 cut(s) 61, 571, 876, 995, 1028
TauI GCSGC 2 cut(s) 900, 917
TfiI GAWTC 5 cut(s) 131, 316, 783, 1114, 1241
Tru1I TTAA 4 cut(s) 126, 839, 1289, 1320
Tru9I TTAA 4 cut(s) 126, 839, 1289, 1320
TscAI CASTG 5 cut(s) 52, 72, 634, 640, 1093
TseI GCWGC 2 cut(s) 23, 514
TspDTI ATGAA 4 cut(s) 123, 387, 954, 1208
TspGWI ACGGA 4 cut(s) 195, 405, 474, 1201
TspRI CASTG 5 cut(s) 52, 72, 634, 640, 1093
VpaK11BI GGWCC 4 cut(s) 200, 639, 669, 1266
XagI CCTNNNNNAGG 1 cut(s) 1322
XbaI TCTAGA 1 cut(s) 488
XceI RCATGY 1 cut(s) 921
XhoI CTCGAG 1 cut(s) 498
XspI CTAG 4 cut(s) 489, 890, 1118, 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.