Rmu_sc0001773.1_g000013

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001773.1
OG0010718
Physical Location & Seq
Reverse (-)
97967 .. 98350
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001773.1_g000013.1.cds

Sequence Viewer

Length: 384 bp
atggggtcagcttgttgtgttgctgcaagggagagatctgacccgaacagaactggaaatgaaacattgcgcaggaatgccttatattcaccatcatggagtttccgatatgataatcgaaggcgtgttgctggtgaaattgatactccatatcgtgcttctcgtggaactagtaggaatgctagcatggagttaaaaggggcattgagttctgaaagaggcaatttttctgatttggggagcccactggagaattttggtacacctatctcccaaaagtcccccgttcatggtggtggaatttgtgcaagtctgaggactccgtcttcaggtgtacattttatttcaatatcatatcaacttttggaaactgaaatactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4

Protein Analysis

127

Amino Acids

13.86

Weight (kDa)

9.29

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19680 AT1G75400
fragaria_vesca FvH4_7g07801 FvH4_7g07801 FvH4_7g07801
malus_domestica MD03G1146100.v1.1
pyrus_communis pycom03g10050
rosa_chinensis RchiOBHm_Chr5g0045191
rosa_laevigata RLG00000034342
rosa_multiflora Rmu_co8061458.1_g000001 Rmu_sc0001773.1_g000013
rosa_roxburghii Rroxscaffold_1G00035840
rosa_rugosa Rorug05G0221500.1 Rorug05G0221600
rosa_samantha Rh5AG302900 Rh5BG311400 Rh5CG337400 Rh5DG321600
rosa_wichuraiana Rw5G028110 Rw5G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 71
AcsI RAATTY 2 cut(s) 253, 300
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 2 cut(s) 262, 336
AfiI CCNNNNNNNGG 2 cut(s) 290, 329
AgsI TTSAA 1 cut(s) 348
AhlI ACTAGT 1 cut(s) 170
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 2 cut(s) 253, 300
AspLEI GCGC 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 81, 146
AsuNHI GCTAGC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 245
BauI CACGAG 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 10
BccI CCATC 1 cut(s) 100
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 2 cut(s) 171, 183
BglII AGATCT 1 cut(s) 35
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 242
BmtI GCTAGC 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 329
Bse1I ACTGG 2 cut(s) 58, 252
Bse3DI GCAATG 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 290, 329
BseMI GCAATG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 58, 252
BseXI GCAGC 1 cut(s) 10
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 290, 329
BsmFI GGGAC 1 cut(s) 265
BsmI GAATGC 2 cut(s) 82, 184
Bsp1286I GDGCHC 1 cut(s) 245
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 242
BspOI GCTAGC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 334
BsrI ACTGG 2 cut(s) 58, 252
BssMI GATC 1 cut(s) 35
BssSI CACGAG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 381
BstAUI TGTACA 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 314
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 1 cut(s) 38
BstMBI GATC 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 184
CfoI GCGC 1 cut(s) 72
Csp6I GTAC 2 cut(s) 261, 335
CviAII CATG 3 cut(s) 96, 187, 290
CviJI RGCY 2 cut(s) 11, 243
CviKI_1 RGCY 2 cut(s) 11, 243
CviQI GTAC 2 cut(s) 261, 335
DdeI CTNAG 1 cut(s) 314
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 245
FaeI CATG 3 cut(s) 99, 190, 293
FaiI YATR 7 cut(s) 85, 97, 111, 151, 188, 291, 355
FaqI GGGAC 1 cut(s) 265
FatI CATG 3 cut(s) 95, 186, 289
Fnu4HI GCNGC 1 cut(s) 24
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 2 cut(s) 171, 183
FspI TGCGCA 1 cut(s) 71
GlaI GCGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 269
HhaI GCGC 1 cut(s) 72
Hin1II CATG 3 cut(s) 99, 190, 293
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 1 cut(s) 319
HphI GGTGA 2 cut(s) 81, 146
Hpy166II GTNNAC 2 cut(s) 263, 335
Hpy188I TCNGA 5 cut(s) 40, 107, 214, 232, 315
Hpy8I GTNNAC 2 cut(s) 263, 335
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4V TGCA 2 cut(s) 26, 308
HpyF3I CTNAG 1 cut(s) 314
Hsp92II CATG 3 cut(s) 99, 190, 293
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 5 cut(s) 39, 58, 117, 233, 315
Lsp1109I GCAGC 1 cut(s) 10
MaeI CTAG 2 cut(s) 171, 183
MalI GATC 1 cut(s) 37
MboI GATC 1 cut(s) 35
MboII GAAGA 1 cut(s) 318
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 4 cut(s) 138, 223, 253, 300
MlyI GAGTC 1 cut(s) 313
MnlI CCTC 2 cut(s) 212, 309
MseI TTAA 1 cut(s) 194
MslI CAYNNNNRTG 2 cut(s) 94, 294
Mva1269I GAATGC 2 cut(s) 82, 184
NdeII GATC 1 cut(s) 35
NheI GCTAGC 1 cut(s) 182
NlaIII CATG 3 cut(s) 99, 190, 293
NlaIV GGNNCC 1 cut(s) 242
NsbI TGCGCA 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PctI GAATGC 2 cut(s) 82, 184
PflFI GACNNNGTC 1 cut(s) 322
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 242
PsuI RGATCY 1 cut(s) 35
PsyI GACNNNGTC 1 cut(s) 322
RsaI GTAC 2 cut(s) 262, 336
RsaNI GTAC 2 cut(s) 261, 335
RseI CAYNNNNRTG 2 cut(s) 94, 294
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 35
SchI GAGTC 1 cut(s) 313
SduI GDGCHC 1 cut(s) 245
SetI ASST 3 cut(s) 13, 268, 334
SmiMI CAYNNNNRTG 2 cut(s) 94, 294
SpeI ACTAGT 1 cut(s) 170
Sse9I AATT 4 cut(s) 138, 223, 253, 300
SspMI CTAG 2 cut(s) 171, 183
TaaI ACNGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 118
TasI AATT 4 cut(s) 138, 223, 253, 300
TatI WGTACW 1 cut(s) 334
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 252
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 75, 278
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 1 cut(s) 252
Tth111I GACNNNGTC 1 cut(s) 322
XapI RAATTY 2 cut(s) 253, 300
XspI CTAG 2 cut(s) 171, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.