Rw5G028470

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0010718
Physical Location & Seq
Forward (+)
43188768 .. 43192987
4220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G028470.1

Sequence Viewer

Length: 993 bp
ATGACGAGCAATTATTCTCCAGATGTTAAAAATTTGGCAGAATCACCGGGAATTGAAGATTCATCCGCTCTAAATCCTTCATTATCCTTCCCTACAACTATTTCAATACCAACTGCAGAACCTTCTCCTGCCCCCAGCTATCCACTTTTCTCCAACTCAACCCCATCAAGGCGGGCCCGTCGTTCACCAGGACATCAGTTACTGAGACAGATTTCTGACAGTCGAATATTGGGTTTGAAATCTCCAAATAACAACTCAATATCTGAAGGAAGACAATCTTTTGTACTCTCTAGTTGCAGCAATGACTTGGCAACTGGATCCCAAGCTGGGTCATCTGATGGGTGGTCTATGCGCACCTTCTCTGAGCTTGTGGCTTCTTCTCAAAGGGAAAGGTGGTCTTTTGACAGTGAGCACTTTGGTTCTATCCATGGAAAGCAAAGTGGTTGTAGCAGCAGGTTCTCATGTTCTCCTTCCGTAGATATGCAGTCGTGTGGGGTCTGCTCAAAGCTCCTAACTGAGAGAACTTCATGGAGCATCCAGAAAATTATTGCCAGCAGTGAGATCTCTGTGGCGGCTGTGTTGGTTTGTGGACATGTTTACCATGCTGAGTGCTTGGAGACTATGACATTGGAGACTGATAGGTATGACCCGGTTTGCCCAATTTGTATGGTAGGAGAGAAGCAAGTCTGGAAGATGTCAAGAAAAGCGATGAGGTCAGAATCAGATTTAAAAGCAAGAAACCACAAGATATCCAAAAATAGAGTTGTGGATAGCTACTTTGATGGTGAATATGATGTTTTTGATCATCAAAAGAACACTGATAGAAAAGGAAAAGTTGTAGCCAAGTTAGAACCCAGTTCCAGTACAAGGAACTCCTTTACTAAGCCTTTCTTGAAACGGCACTTTTCACTTGGATCCAAGTGGAGTAGACCACTTTCGGAAAATGATTCAGCTAGGAAGAAGGGGTTTTGGGCCAGGTATCGTAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4

Protein Analysis

330

Amino Acids

36.69

Weight (kDa)

9.25

Isoelectric Point (pI)

66.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19680 AT1G75400
fragaria_vesca FvH4_7g07801 FvH4_7g07801 FvH4_7g07801
malus_domestica MD03G1146100.v1.1
pyrus_communis pycom03g10050
rosa_chinensis RchiOBHm_Chr5g0045191
rosa_laevigata RLG00000034342
rosa_multiflora Rmu_co8061458.1_g000001 Rmu_sc0001773.1_g000013
rosa_roxburghii Rroxscaffold_1G00035840
rosa_rugosa Rorug05G0221500.1 Rorug05G0221600
rosa_samantha Rh5AG302900 Rh5BG311400 Rh5CG337400 Rh5DG321600
rosa_wichuraiana Rw5G028110 Rw5G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 444
AccBSI CCGCTC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 928
AciI CCGC 3 cut(s) 66, 172, 572
AclWI GGATC 4 cut(s) 312, 325, 909, 922
AcsI RAATTY 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 2 cut(s) 285, 865
AfiI CCNNNNNNNGG 3 cut(s) 168, 327, 867
AflIII ACRYGT 1 cut(s) 592
AgsI TTSAA 4 cut(s) 56, 105, 238, 895
AjnI CCWGG 2 cut(s) 187, 974
AluBI AGCT 6 cut(s) 138, 326, 367, 508, 774, 953
AluI AGCT 6 cut(s) 138, 326, 367, 508, 774, 953
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 3 cut(s) 199, 611, 626
AlwI GGATC 4 cut(s) 312, 325, 909, 922
AlwNI CAGNNNCTG 1 cut(s) 202
AoxI GGCC 2 cut(s) 174, 972
ApaI GGGCCC 1 cut(s) 178
ApeKI GCWGC 2 cut(s) 297, 450
ApoI RAATTY 1 cut(s) 31
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 3 cut(s) 174, 175, 972
AsuC2I CCSGG 2 cut(s) 48, 650
AsuHPI GGTGA 3 cut(s) 36, 177, 797
BaeGI GKGCMC 1 cut(s) 178
BamHI GGATCC 2 cut(s) 317, 914
BanII GRGCYC 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 309, 462
BccI CCATC 3 cut(s) 172, 332, 776
BceAI ACGGC 1 cut(s) 914
BciT130I CCWGG 2 cut(s) 189, 976
BclI TGATCA 1 cut(s) 802
BcnI CCSGG 2 cut(s) 48, 650
BcoDI GTCTC 3 cut(s) 199, 611, 626
BfaI CTAG 2 cut(s) 291, 954
BfmI CTRYAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 444
BglII AGATCT 1 cut(s) 561
BisI GCNGC 3 cut(s) 298, 451, 573
BlsI GCNGC 3 cut(s) 299, 452, 574
Bme1390I CCNGG 4 cut(s) 48, 189, 650, 976
BmgT120I GGNCC 3 cut(s) 174, 175, 972
BmiI GGNNCC 3 cut(s) 176, 319, 916
BmrFI CCNGG 4 cut(s) 48, 189, 650, 976
BmrI ACTGGG 1 cut(s) 849
BmsI GCATC 1 cut(s) 543
BmuI ACTGGG 1 cut(s) 849
BpiI GAAGAC 1 cut(s) 277
BpuMI CCSGG 2 cut(s) 48, 650
BsaJI CCNNGG 1 cut(s) 427
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 327, 867
Bse1I ACTGG 3 cut(s) 319, 855, 861
Bse3DI GCAATG 1 cut(s) 307
BseBI CCWGG 2 cut(s) 189, 976
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 2 cut(s) 62, 534
BseLI CCNNNNNNNGG 3 cut(s) 168, 327, 867
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 4 cut(s) 194, 354, 507, 597
BseNI ACTGG 3 cut(s) 319, 855, 861
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 2 cut(s) 309, 462
BseYI CCCAGC 2 cut(s) 134, 326
BshFI GGCC 2 cut(s) 176, 974
BsiHKAI GWGCWC 1 cut(s) 414
BsiSI CCGG 2 cut(s) 47, 650
BslI CCNNNNNNNGG 3 cut(s) 168, 327, 867
BsmAI GTCTC 3 cut(s) 199, 611, 626
BsnI GGCC 2 cut(s) 176, 974
Bsp120I GGGCCC 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 178, 414
Bsp143I GATC 4 cut(s) 317, 561, 802, 914
Bsp19I CCATGG 1 cut(s) 427
BspACI CCGC 3 cut(s) 66, 172, 572
BspANI GGCC 2 cut(s) 176, 974
BspCNI CTCAG 4 cut(s) 195, 355, 508, 598
BspLI GGNNCC 3 cut(s) 176, 319, 916
BspMAI CTGCAG 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 4 cut(s) 312, 325, 909, 922
BsrBI CCGCTC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 307
BsrI ACTGG 3 cut(s) 319, 855, 861
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 4 cut(s) 317, 561, 802, 914
BssT1I CCWWGG 1 cut(s) 427
Bst2UI CCWGG 2 cut(s) 189, 976
Bst4CI ACNGT 2 cut(s) 221, 407
BstC8I GCNNGC 2 cut(s) 174, 553
BstDEI CTNAG 5 cut(s) 203, 363, 516, 606, 882
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 2 cut(s) 62, 534
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 4 cut(s) 320, 564, 805, 917
BstMAI GTCTC 3 cut(s) 199, 611, 626
BstMBI GATC 4 cut(s) 317, 561, 802, 914
BstNI CCWGG 2 cut(s) 189, 976
BstNSI RCATGY 1 cut(s) 596
BstSCI CCNGG 4 cut(s) 46, 187, 648, 974
BstSFI CTRYAG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 178
BstV1I GCAGC 2 cut(s) 309, 462
BstV2I GAAGAC 1 cut(s) 277
BstX2I RGATCY 3 cut(s) 317, 561, 914
BstYI RGATCY 3 cut(s) 317, 561, 914
BsuRI GGCC 2 cut(s) 176, 974
BtgI CCRYGG 1 cut(s) 427
BtgZI GCGATG 1 cut(s) 722
BtsCI GGATG 2 cut(s) 62, 534
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 3 cut(s) 412, 562, 816
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 174, 553
CaiI CAGNNNCTG 1 cut(s) 202
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 3 cut(s) 174, 175, 972
Csp6I GTAC 2 cut(s) 284, 864
CviAII CATG 5 cut(s) 428, 462, 528, 593, 602
CviQI GTAC 2 cut(s) 284, 864
DdeI CTNAG 5 cut(s) 203, 363, 516, 606, 882
DpnI GATC 4 cut(s) 319, 563, 804, 916
DpnII GATC 4 cut(s) 317, 561, 802, 914
DraI TTTAAA 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 427
Eco24I GRGCYC 1 cut(s) 178
Eco32I GATATC 1 cut(s) 750
Eco57I CTGAAG 1 cut(s) 285
EcoRII CCWGG 2 cut(s) 187, 974
EcoRV GATATC 1 cut(s) 750
EcoT14I CCWWGG 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 5 cut(s) 431, 465, 531, 596, 605
FalI AAGNNNNNCTT 6 cut(s) 262, 294, 382, 414, 875, 907
FatI CATG 5 cut(s) 427, 461, 527, 592, 601
FauI CCCGC 1 cut(s) 165
FbaI TGATCA 1 cut(s) 802
FblI GTMKAC 1 cut(s) 928
Fnu4HI GCNGC 3 cut(s) 298, 451, 573
FokI GGATG 2 cut(s) 49, 521
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 3 cut(s) 298, 451, 573
FspAI RTGCGCAY 1 cut(s) 353
FspBI CTAG 2 cut(s) 291, 954
FspI TGCGCA 1 cut(s) 353
GlaI GCGC 1 cut(s) 353
GluI GCNGC 3 cut(s) 298, 451, 573
GsaI CCCAGC 2 cut(s) 138, 330
HaeIII GGCC 2 cut(s) 176, 974
HapII CCGG 2 cut(s) 47, 650
HhaI GCGC 1 cut(s) 354
Hin1II CATG 5 cut(s) 431, 465, 531, 596, 605
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HinfI GANTC 4 cut(s) 41, 59, 719, 947
HpaII CCGG 2 cut(s) 47, 650
HphI GGTGA 3 cut(s) 36, 177, 797
Hpy166II GTNNAC 4 cut(s) 185, 590, 598, 929
Hpy188I TCNGA 7 cut(s) 217, 265, 337, 364, 718, 724, 940
Hpy188III TCNNGA 5 cut(s) 20, 538, 688, 699, 892
Hpy8I GTNNAC 4 cut(s) 185, 590, 598, 929
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 7 cut(s) 87, 97, 132, 260, 367, 480, 955
HpyCH4III ACNGT 2 cut(s) 221, 407
HpyCH4V TGCA 3 cut(s) 116, 297, 484
HpyF3I CTNAG 5 cut(s) 203, 363, 516, 606, 882
Hsp92II CATG 5 cut(s) 431, 465, 531, 596, 605
HspAI GCGC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 4 cut(s) 317, 561, 802, 914
LmnI GCTCC 2 cut(s) 513, 531
Lsp1109I GCAGC 2 cut(s) 309, 462
LweI GCATC 1 cut(s) 543
MaeI CTAG 2 cut(s) 291, 954
MaeIII GTNAC 1 cut(s) 198
MalI GATC 4 cut(s) 319, 563, 804, 916
MbiI CCGCTC 1 cut(s) 68
MboI GATC 4 cut(s) 317, 561, 802, 914
MboII GAAGA 5 cut(s) 68, 282, 369, 703, 970
MflI RGATCY 3 cut(s) 317, 561, 914
MhlI GDGCHC 2 cut(s) 178, 414
MluCI AATT 5 cut(s) 10, 31, 51, 543, 660
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 1 cut(s) 705
MseI TTAA 2 cut(s) 27, 728
MspI CCGG 2 cut(s) 47, 650
MspR9I CCNGG 4 cut(s) 48, 189, 650, 976
MvaI CCWGG 2 cut(s) 189, 976
NciI CCSGG 2 cut(s) 48, 650
NcoI CCATGG 1 cut(s) 427
NdeII GATC 4 cut(s) 317, 561, 802, 914
NlaIII CATG 5 cut(s) 431, 465, 531, 596, 605
NlaIV GGNNCC 3 cut(s) 176, 319, 916
NsbI TGCGCA 1 cut(s) 353
NspI RCATGY 1 cut(s) 596
PciI ACATGT 1 cut(s) 592
PfeI GAWTC 4 cut(s) 41, 59, 719, 947
PkrI GCNGC 3 cut(s) 299, 452, 574
PscI ACATGT 1 cut(s) 592
Psp6I CCWGG 2 cut(s) 187, 974
PspFI CCCAGC 2 cut(s) 134, 326
PspGI CCWGG 2 cut(s) 187, 974
PspN4I GGNNCC 3 cut(s) 176, 319, 916
PspOMI GGGCCC 1 cut(s) 174
PspPI GGNCC 3 cut(s) 174, 175, 972
PstI CTGCAG 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 3 cut(s) 317, 561, 914
RsaI GTAC 2 cut(s) 285, 865
RsaNI GTAC 2 cut(s) 284, 864
SaqAI TTAA 2 cut(s) 27, 728
SatI GCNGC 3 cut(s) 298, 451, 573
Sau3AI GATC 4 cut(s) 317, 561, 802, 914
Sau96I GGNCC 3 cut(s) 174, 175, 972
ScrFI CCNGG 4 cut(s) 48, 189, 650, 976
SduI GDGCHC 2 cut(s) 178, 414
SfaNI GCATC 1 cut(s) 543
SfcI CTRYAG 1 cut(s) 114
Sse9I AATT 5 cut(s) 10, 31, 51, 543, 660
SsiI CCGC 3 cut(s) 66, 172, 572
SspI AATATT 1 cut(s) 228
SspMI CTAG 2 cut(s) 291, 954
StyD4I CCNGG 4 cut(s) 46, 187, 648, 974
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 2 cut(s) 221, 407
TaqI TCGA 1 cut(s) 223
TasI AATT 5 cut(s) 10, 31, 51, 543, 660
TatI WGTACW 2 cut(s) 283, 863
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 4 cut(s) 41, 59, 719, 947
Tru1I TTAA 2 cut(s) 27, 728
Tru9I TTAA 2 cut(s) 27, 728
TscAI CASTG 3 cut(s) 412, 562, 823
TseI GCWGC 2 cut(s) 297, 450
TspDTI ATGAA 3 cut(s) 51, 69, 516
TspGWI ACGGA 1 cut(s) 463
TspRI CASTG 3 cut(s) 412, 562, 823
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 596
XmiI GTMKAC 1 cut(s) 928
XspI CTAG 2 cut(s) 291, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.