AT1G75400

protein binding, zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010718
Physical Location & Seq
Forward (+)
28296886 .. 28299768
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75400.1

Sequence Viewer

Length: 1368 bp
ATGGGTTCAGTTTGTTGTGTAGCTGTGAAAGACAGAAAGGTTCCTCCTAGTGGTGGACCTGCGAGTTCATCTGTTCATCGGAATTCAGCATGTTCGCCACAATGGAGTTTTCGACGTGATAATAGGAGGCGAGTGGCTGATGAGATTGAGGGTTCACCTTATTACAGTCCTTATGTTGCGAGTAGAGGTATTAGTATGGATAAGATGTCATTAGGCTCTGAGAGAGGAACTTTATCTGAAGGAGGAACCCCTCCTGATGGACATTTAGGGACTCCTGCTTCTCAGAAATCAGCAACTCCGGAAATGAGCACCAATTCCATGGTTCCACCTTCTTCAGGTTCATCCTTGGCAAGCAGTGATCTCATTGAGGTGAAGAACTTAGTTGACTCACCTGGAATTGTCCCTTCAGCTCAATCGAAGCCTTTGTTCTCCACGCCTTCTCTTCCCAATCCAGTTAGTGATCTTTCATCGGCTCACACGCGTTTGCTTCCTCCTAAATCCACACCATCAAGACGGGCTCGGCGTTCACCTGGGCATCAGTTGTTTAGGCAGGTTTCTGATAGTCAAATTTTAGGACTGAAATCCCCAATTAATAATTACTCAATCTCAGAAGGAAGGTCGTCCTTTGTGCTTTCGACCTGTAGCAATGACTTCGCCACTGGATCCCAGTACGCATCTTCTGAAGGTGGCTGGTCTATGAACACTTTTTCTGAGCTCGTGGCATATTCTCAAAGGGATAGATGGTCCTTTGATAGCGAACACTTGGGTTCTGGCAGACGGAAACTAAGTGGTGGTAGCAGCAGATTCTCATTCTCCCCTTCCGTTGTTGATCAGCAGGTTTGTGGAGCTTGTTCAAAGTTGCTAACCGAGAGGTCTTCTATAGCCACTTTTGAGCTCCCAATCGCTGCTGTTCTTGCCTGTGGTCATGTTTACCACGCAGAGTGCTTAGAGACCATGACTACTGATATAGAGAAGTATGATCCTGCTTGTCCCATATGCACAATTGGGGAGAAACGGGTTGCGAAAATAACAAGGAAAGCCCTAAAAGCGGAGGCGGAAGCAAAGGCAAAGCAGTACAAAAGATGTAAAAACCGTGTGGTAGATAGTTACGGTGAGAGTGAATGCGATGAGTTTGTATTCCAGAAAATGGGGAAACGAGAAGGCAAAGCTCTCAAGCTGGAAGCTAGTTGCAGTAGCAAGAGCTCGTCTAATAAGTCATTCTTGAAATGGCACTTTGCTTCTATCAGCTCCAAGTGGAATAAACCCTCGTCCAAAGACTCTGCATTGAAGAAGGGATTCTGGTCTAGACATCGAAATAACCGGTCTTCTTCAAGCATAGAGGGACTTAATCAGACATCTCCGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4

Protein Analysis

455

Amino Acids

49.3

Weight (kDa)

9.42

Isoelectric Point (pI)

74.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19680 AT1G75400
fragaria_vesca FvH4_7g07801 FvH4_7g07801 FvH4_7g07801
malus_domestica MD03G1146100.v1.1
pyrus_communis pycom03g10050
rosa_chinensis RchiOBHm_Chr5g0045191
rosa_laevigata RLG00000034342
rosa_multiflora Rmu_co8061458.1_g000001 Rmu_sc0001773.1_g000013
rosa_roxburghii Rroxscaffold_1G00035840
rosa_rugosa Rorug05G0221500.1 Rorug05G0221600
rosa_samantha Rh5AG302900 Rh5BG311400 Rh5CG337400 Rh5DG321600
rosa_wichuraiana Rw5G028110 Rw5G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 67, 541, 826
AccB7I CCANNNNNTGG 1 cut(s) 1147
AccII CGCG 1 cut(s) 481
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 3 cut(s) 1049, 1055, 1361
AclWI GGATC 3 cut(s) 657, 670, 974
AcsI RAATTY 2 cut(s) 82, 567
AcuI CTGAAG 4 cut(s) 258, 318, 390, 702
AfaI GTAC 2 cut(s) 671, 1076
AfiI CCNNNNNNNGG 6 cut(s) 50, 53, 257, 335, 1048, 1147
AflIII ACRYGT 1 cut(s) 479
AgeI ACCGGT 1 cut(s) 1320
AgsI TTSAA 4 cut(s) 855, 1225, 1288, 1332
AjiI CACGTC 1 cut(s) 116
AjnI CCWGG 2 cut(s) 391, 529
Alw21I GWGCWC 4 cut(s) 311, 717, 897, 1205
Alw26I GTCTC 1 cut(s) 944
AlwI GGATC 3 cut(s) 657, 670, 974
Aor13HI TCCGGA 1 cut(s) 298
ApeKI GCWGC 2 cut(s) 798, 905
ApoI RAATTY 2 cut(s) 82, 567
AseI ATTAAT 1 cut(s) 591
AsiGI ACCGGT 1 cut(s) 1320
Asp700I GAANNNNTTC 1 cut(s) 1295
AspS9I GGNCC 2 cut(s) 56, 744
AsuHPI GGTGA 5 cut(s) 147, 381, 382, 519, 1124
AvaII GGWCC 2 cut(s) 56, 744
BamHI GGATCC 1 cut(s) 662
BanII GRGCYC 4 cut(s) 520, 717, 897, 1205
BauI CACGAG 1 cut(s) 716
BbsI GAAGAC 2 cut(s) 867, 1317
Bbv12I GWGCWC 4 cut(s) 311, 717, 897, 1205
BbvI GCAGC 2 cut(s) 810, 892
BccI CCATC 3 cut(s) 251, 514, 735
BcgI CGANNNNNNTGC 2 cut(s) 634, 668
BciT130I CCWGG 2 cut(s) 393, 531
BclI TGATCA 1 cut(s) 829
BcoDI GTCTC 1 cut(s) 944
BfaI CTAG 3 cut(s) 48, 1185, 1305
BfmI CTRYAG 2 cut(s) 640, 879
BfuAI ACCTGC 3 cut(s) 67, 541, 826
BisI GCNGC 2 cut(s) 799, 906
BlsI GCNGC 2 cut(s) 800, 907
Bme1390I CCNGG 2 cut(s) 393, 531
Bme18I GGWCC 2 cut(s) 56, 744
BmgBI CACGTC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 56, 744
BmiI GGNNCC 4 cut(s) 42, 247, 324, 664
BmrFI CCNGG 2 cut(s) 393, 531
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 2 cut(s) 544, 683
BmuI ACTGGG 1 cut(s) 661
BpiI GAAGAC 2 cut(s) 867, 1317
BpuEI CTTGAG 1 cut(s) 1157
BsaI GGTCTC 1 cut(s) 944
BsaJI CCNNGG 3 cut(s) 318, 345, 530
BsaWI WCCGGW 2 cut(s) 298, 1320
Bsc4I CCNNNNNNNGG 6 cut(s) 50, 53, 257, 335, 1048, 1147
Bse118I RCCGGY 1 cut(s) 1320
Bse1I ACTGG 3 cut(s) 452, 664, 667
Bse3DI GCAATG 1 cut(s) 652
BseAI TCCGGA 1 cut(s) 298
BseBI CCWGG 2 cut(s) 393, 531
BseDI CCNNGG 3 cut(s) 318, 345, 530
BseGI GGATG 1 cut(s) 341
BseLI CCNNNNNNNGG 6 cut(s) 50, 53, 257, 335, 1048, 1147
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 4 cut(s) 210, 296, 621, 702
BseNI ACTGG 3 cut(s) 452, 664, 667
BseXI GCAGC 2 cut(s) 810, 892
Bsh1236I CGCG 1 cut(s) 481
BshTI ACCGGT 1 cut(s) 1320
BsiHKAI GWGCWC 4 cut(s) 311, 717, 897, 1205
BsiSI CCGG 2 cut(s) 299, 1321
BslFI GGGAC 4 cut(s) 283, 386, 975, 1356
BslI CCNNNNNNNGG 6 cut(s) 50, 53, 257, 335, 1048, 1147
BsmAI GTCTC 1 cut(s) 944
BsmFI GGGAC 4 cut(s) 283, 386, 975, 1356
BsmI GAATGC 1 cut(s) 1127
Bso31I GGTCTC 1 cut(s) 944
Bsp1286I GDGCHC 5 cut(s) 311, 520, 717, 897, 1205
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 5 cut(s) 358, 460, 662, 829, 979
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 3 cut(s) 1049, 1055, 1361
BspCNI CTCAG 4 cut(s) 211, 295, 620, 703
BspEI TCCGGA 1 cut(s) 298
BspFNI CGCG 1 cut(s) 481
BspLI GGNNCC 4 cut(s) 42, 247, 324, 664
BspMI ACCTGC 3 cut(s) 67, 541, 826
BspPI GGATC 3 cut(s) 657, 670, 974
BspTNI GGTCTC 1 cut(s) 944
BsrDI GCAATG 1 cut(s) 652
BsrFI RCCGGY 1 cut(s) 1320
BsrI ACTGG 3 cut(s) 452, 664, 667
BssAI RCCGGY 1 cut(s) 1320
BssECI CCNNGG 3 cut(s) 318, 345, 530
BssMI GATC 5 cut(s) 358, 460, 662, 829, 979
BssSI CACGAG 1 cut(s) 716
BssT1I CCWWGG 2 cut(s) 318, 345
Bst2BI CACGAG 1 cut(s) 716
Bst2UI CCWGG 2 cut(s) 393, 531
Bst4CI ACNGT 3 cut(s) 167, 1094, 1112
Bst6I CTCTTC 1 cut(s) 447
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 7 cut(s) 219, 282, 379, 607, 711, 785, 946
BstDSI CCRYGG 1 cut(s) 318
BstENI CCTNNNNNAGG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 341
BstFNI CGCG 1 cut(s) 481
BstKTI GATC 5 cut(s) 361, 463, 665, 832, 982
BstMAI GTCTC 1 cut(s) 944
BstMBI GATC 5 cut(s) 358, 460, 662, 829, 979
BstMWI GCNNNNNNNGC 2 cut(s) 914, 1046
BstNI CCWGG 2 cut(s) 393, 531
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 391, 529
BstSFI CTRYAG 2 cut(s) 640, 879
BstUI CGCG 1 cut(s) 481
BstV1I GCAGC 2 cut(s) 810, 892
BstV2I GAAGAC 2 cut(s) 867, 1317
BstX2I RGATCY 1 cut(s) 662
BstXI CCANNNNNNTGG 1 cut(s) 319
BstYI RGATCY 1 cut(s) 662
BtgI CCRYGG 1 cut(s) 318
BtgZI GCGATG 1 cut(s) 1140
BtrI CACGTC 1 cut(s) 116
BtsCI GGATG 1 cut(s) 341
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 361, 657
BveI ACCTGC 3 cut(s) 67, 541, 826
Cac8I GCNNGC 1 cut(s) 352
Cfr10I RCCGGY 1 cut(s) 1320
Cfr13I GGNCC 2 cut(s) 56, 744
Csp6I GTAC 2 cut(s) 670, 1075
CspAI ACCGGT 1 cut(s) 1320
CviAII CATG 4 cut(s) 90, 319, 926, 955
CviQI GTAC 2 cut(s) 670, 1075
DdeI CTNAG 7 cut(s) 219, 282, 379, 607, 711, 785, 946
DpnI GATC 5 cut(s) 360, 462, 664, 831, 981
DpnII GATC 5 cut(s) 358, 460, 662, 829, 979
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
EciI GGCGGA 1 cut(s) 1070
Ecl136II GAGCTC 3 cut(s) 715, 895, 1203
Eco130I CCWWGG 2 cut(s) 318, 345
Eco24I GRGCYC 4 cut(s) 520, 717, 897, 1205
Eco31I GGTCTC 1 cut(s) 944
Eco47I GGWCC 2 cut(s) 56, 744
Eco53kI GAGCTC 3 cut(s) 715, 895, 1203
Eco57I CTGAAG 4 cut(s) 258, 318, 390, 702
EcoICRI GAGCTC 3 cut(s) 715, 895, 1203
EcoNI CCTNNNNNAGG 1 cut(s) 333
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 391, 529
EcoT14I CCWWGG 2 cut(s) 318, 345
EcoT38I GRGCYC 4 cut(s) 520, 717, 897, 1205
ErhI CCWWGG 2 cut(s) 318, 345
FaeI CATG 4 cut(s) 93, 322, 929, 958
FalI AAGNNNNNCTT 2 cut(s) 1205, 1237
FaqI GGGAC 4 cut(s) 283, 386, 975, 1356
FatI CATG 4 cut(s) 89, 318, 925, 954
FauNDI CATATG 1 cut(s) 995
FbaI TGATCA 1 cut(s) 829
Fnu4HI GCNGC 2 cut(s) 799, 906
FokI GGATG 1 cut(s) 328
FriOI GRGCYC 4 cut(s) 520, 717, 897, 1205
Fsp4HI GCNGC 2 cut(s) 799, 906
FspBI CTAG 3 cut(s) 48, 1185, 1305
GluI GCNGC 2 cut(s) 799, 906
HapII CCGG 2 cut(s) 299, 1321
Hin1II CATG 4 cut(s) 93, 322, 929, 958
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 5 cut(s) 271, 386, 804, 1277, 1296
HpaII CCGG 2 cut(s) 299, 1321
HphI GGTGA 5 cut(s) 147, 381, 382, 519, 1124
Hpy166II GTNNAC 5 cut(s) 56, 155, 385, 527, 931
Hpy188I TCNGA 9 cut(s) 81, 220, 238, 285, 559, 610, 682, 712, 1353
Hpy188III TCNNGA 6 cut(s) 254, 299, 510, 1141, 1222, 1305
Hpy8I GTNNAC 5 cut(s) 56, 155, 385, 527, 931
Hpy99I CGWCG 1 cut(s) 117
HpyCH4III ACNGT 3 cut(s) 167, 1094, 1112
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 999, 1191, 1283
HpyF10VI GCNNNNNNNGC 2 cut(s) 914, 1046
HpyF3I CTNAG 7 cut(s) 219, 282, 379, 607, 711, 785, 946
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 4 cut(s) 93, 322, 929, 958
Kpn2I TCCGGA 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 5 cut(s) 358, 460, 662, 829, 979
LmnI GCTCC 3 cut(s) 845, 900, 1253
Lsp1109I GCAGC 2 cut(s) 810, 892
LweI GCATC 2 cut(s) 544, 683
MaeI CTAG 3 cut(s) 48, 1185, 1305
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 1106
MalI GATC 5 cut(s) 360, 462, 664, 831, 981
MboI GATC 5 cut(s) 358, 460, 662, 829, 979
MboII GAAGA 8 cut(s) 324, 385, 434, 669, 867, 1300, 1317, 1320
MfeI CAATTG 1 cut(s) 1002
MflI RGATCY 1 cut(s) 662
MhlI GDGCHC 5 cut(s) 311, 520, 717, 897, 1205
MluCI AATT 7 cut(s) 82, 313, 396, 567, 588, 595, 1002
MluI ACGCGT 1 cut(s) 479
MlyI GAGTC 3 cut(s) 265, 380, 1271
MroI TCCGGA 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 1295
MseI TTAA 2 cut(s) 591, 1347
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 2 cut(s) 299, 1321
MspR9I CCNGG 2 cut(s) 393, 531
MunI CAATTG 1 cut(s) 1002
Mva1269I GAATGC 1 cut(s) 1127
MvaI CCWGG 2 cut(s) 393, 531
MvnI CGCG 1 cut(s) 481
MwoI GCNNNNNNNGC 2 cut(s) 914, 1046
NcoI CCATGG 1 cut(s) 318
NdeI CATATG 1 cut(s) 995
NdeII GATC 5 cut(s) 358, 460, 662, 829, 979
NlaIII CATG 4 cut(s) 93, 322, 929, 958
NlaIV GGNNCC 4 cut(s) 42, 247, 324, 664
NmeAIII GCCGAG 1 cut(s) 499
NspI RCATGY 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 520
PctI GAATGC 1 cut(s) 1127
PdmI GAANNNNTTC 1 cut(s) 1295
PfeI GAWTC 2 cut(s) 804, 1296
PflMI CCANNNNNTGG 1 cut(s) 1147
PinAI ACCGGT 1 cut(s) 1320
PkrI GCNGC 2 cut(s) 800, 907
PleI GAGTC 3 cut(s) 265, 380, 1271
PpsI GAGTC 3 cut(s) 265, 380, 1271
PshBI ATTAAT 1 cut(s) 591
Psp124BI GAGCTC 3 cut(s) 717, 897, 1205
Psp6I CCWGG 2 cut(s) 391, 529
PspGI CCWGG 2 cut(s) 391, 529
PspN4I GGNNCC 4 cut(s) 42, 247, 324, 664
PspPI GGNCC 2 cut(s) 56, 744
PsuI RGATCY 1 cut(s) 662
RsaI GTAC 2 cut(s) 671, 1076
RsaNI GTAC 2 cut(s) 670, 1075
RseI CAYNNNNRTG 1 cut(s) 368
SacI GAGCTC 3 cut(s) 717, 897, 1205
SaqAI TTAA 2 cut(s) 591, 1347
SatI GCNGC 2 cut(s) 799, 906
Sau3AI GATC 5 cut(s) 358, 460, 662, 829, 979
Sau96I GGNCC 2 cut(s) 56, 744
SchI GAGTC 3 cut(s) 265, 380, 1271
ScrFI CCNGG 2 cut(s) 393, 531
SduI GDGCHC 5 cut(s) 311, 520, 717, 897, 1205
SfaNI GCATC 2 cut(s) 544, 683
SfcI CTRYAG 2 cut(s) 640, 879
SinI GGWCC 2 cut(s) 56, 744
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 1172
SmoI CTYRAG 1 cut(s) 1172
Sse9I AATT 7 cut(s) 82, 313, 396, 567, 588, 595, 1002
SsiI CCGC 3 cut(s) 1049, 1055, 1361
SspMI CTAG 3 cut(s) 48, 1185, 1305
SstI GAGCTC 3 cut(s) 717, 897, 1205
StyD4I CCNGG 2 cut(s) 391, 529
StyI CCWWGG 2 cut(s) 318, 345
TaaI ACNGT 3 cut(s) 167, 1094, 1112
TaiI ACGT 1 cut(s) 118
TaqI TCGA 4 cut(s) 112, 416, 635, 1312
TasI AATT 7 cut(s) 82, 313, 396, 567, 588, 595, 1002
TatI WGTACW 1 cut(s) 1074
TfiI GAWTC 2 cut(s) 804, 1296
Tru1I TTAA 2 cut(s) 591, 1347
Tru9I TTAA 2 cut(s) 591, 1347
TscAI CASTG 2 cut(s) 361, 664
TseI GCWGC 2 cut(s) 798, 905
TspDTI ATGAA 5 cut(s) 57, 65, 330, 456, 713
TspGWI ACGGA 2 cut(s) 793, 811
TspRI CASTG 2 cut(s) 361, 664
Van91I CCANNNNNTGG 1 cut(s) 1147
VpaK11BI GGWCC 2 cut(s) 56, 744
VspI ATTAAT 1 cut(s) 591
XagI CCTNNNNNAGG 1 cut(s) 333
XapI RAATTY 2 cut(s) 82, 567
XbaI TCTAGA 1 cut(s) 1304
XceI RCATGY 1 cut(s) 93
XmnI GAANNNNTTC 1 cut(s) 1295
XspI CTAG 3 cut(s) 48, 1185, 1305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.