Rmu_co8061458.1_g000001

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8061458.1
OG0010718
Physical Location & Seq
Reverse (-)
2 .. 279
278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8061458.1_g000001.1.cds

Sequence Viewer

Length: 278 bp
atgcgcaccttctctgagcttgtggcttcttctcaaagggaaaggtggtcttttgacagtgagcactttggttctatccatggaaagcaaagtggttgtagcagcaggttctcatgctctccttccgtagatatgcagtcgtgtggggtctgctcaaagctcctaactgagagaacttcatggagcatccagaaaattattgccagcagtgagatctctgtggcggctgtgttggtttgtggacatgtttaccatgctgagtgcttggagactatgac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4

Protein Analysis

93

Amino Acids

10.24

Weight (kDa)

6.39

Isoelectric Point (pI)

66.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19680 AT1G75400
fragaria_vesca FvH4_7g07801 FvH4_7g07801 FvH4_7g07801
malus_domestica MD03G1146100.v1.1
pyrus_communis pycom03g10050
rosa_chinensis RchiOBHm_Chr5g0045191
rosa_laevigata RLG00000034342
rosa_multiflora Rmu_co8061458.1_g000001 Rmu_sc0001773.1_g000013
rosa_roxburghii Rroxscaffold_1G00035840
rosa_rugosa Rorug05G0221500.1 Rorug05G0221600
rosa_samantha Rh5AG302900 Rh5BG311400 Rh5CG337400 Rh5DG321600
rosa_wichuraiana Rw5G028110 Rw5G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 96
AciI CCGC 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 244
AluBI AGCT 2 cut(s) 19, 160
AluI AGCT 2 cut(s) 19, 160
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 96
BglII AGATCT 1 cut(s) 213
BisI GCNGC 2 cut(s) 103, 225
BlsI GCNGC 2 cut(s) 104, 226
BmsI GCATC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 186
BseMII CTCAG 3 cut(s) 6, 159, 249
BseXI GCAGC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 1 cut(s) 224
BspCNI CTCAG 3 cut(s) 7, 160, 250
BspMI ACCTGC 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 3 cut(s) 15, 168, 258
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 186
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 2 cut(s) 64, 214
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 205
CfoI GCGC 1 cut(s) 6
CviAII CATG 5 cut(s) 80, 114, 180, 245, 254
CviJI RGCY 4 cut(s) 19, 26, 160, 227
CviKI_1 RGCY 4 cut(s) 19, 26, 160, 227
DdeI CTNAG 3 cut(s) 15, 168, 258
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 5 cut(s) 83, 117, 183, 248, 257
FaiI YATR 7 cut(s) 81, 115, 134, 181, 246, 255, 275
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FatI CATG 5 cut(s) 79, 113, 179, 244, 253
Fnu4HI GCNGC 2 cut(s) 103, 225
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 103, 225
FspAI RTGCGCAY 1 cut(s) 5
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 103, 225
HhaI GCGC 1 cut(s) 6
Hin1II CATG 5 cut(s) 83, 117, 183, 248, 257
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
Hpy166II GTNNAC 2 cut(s) 242, 250
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 2 cut(s) 242, 250
HpyAV CCTTC 2 cut(s) 19, 132
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 136
HpyF3I CTNAG 3 cut(s) 15, 168, 258
Hsp92II CATG 5 cut(s) 83, 117, 183, 248, 257
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 2 cut(s) 165, 183
LpnPI CCDG 3 cut(s) 91, 203, 217
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 195
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 1 cut(s) 21
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 195
NcoI CCATGG 1 cut(s) 79
NdeII GATC 1 cut(s) 213
NlaIII CATG 5 cut(s) 83, 117, 183, 248, 257
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 1 cut(s) 248
PciI ACATGT 1 cut(s) 244
PkrI GCNGC 2 cut(s) 104, 226
PscI ACATGT 1 cut(s) 244
PsuI RGATCY 1 cut(s) 213
SatI GCNGC 2 cut(s) 103, 225
Sau3AI GATC 1 cut(s) 213
SduI GDGCHC 1 cut(s) 66
SetI ASST 5 cut(s) 11, 21, 47, 110, 162
SfaNI GCATC 1 cut(s) 195
Sse9I AATT 1 cut(s) 195
SsiI CCGC 1 cut(s) 224
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 59
TasI AATT 1 cut(s) 195
TauI GCSGC 1 cut(s) 227
TscAI CASTG 2 cut(s) 64, 214
TseI GCWGC 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 168
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 2 cut(s) 64, 214
XceI RCATGY 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.